Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_A06
         (348 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55523| Best HMM Match : Peptidase_M16_C (HMM E-Value=3.1e-13)       27   5.5  
SB_40817| Best HMM Match : Peptidase_M16_C (HMM E-Value=1.6e-36)       27   5.5  
SB_30042| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.5  
SB_3674| Best HMM Match : Retrotrans_gag (HMM E-Value=1.7e-06)         26   7.3  
SB_54838| Best HMM Match : Vitellogenin_N (HMM E-Value=4.76441e-44)    26   7.3  
SB_51094| Best HMM Match : VWA (HMM E-Value=0)                         26   7.3  
SB_15811| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.3  
SB_32230| Best HMM Match : Keratin_B2 (HMM E-Value=0.22)               26   9.7  

>SB_55523| Best HMM Match : Peptidase_M16_C (HMM E-Value=3.1e-13)
          Length = 209

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +1

Query: 121 VRPHPKQLPNIVHFHCSMEMTKYD 192
           V P P  LP + H    +E T YD
Sbjct: 8   VNPGPTPLPELAHVSIGLESTSYD 31


>SB_40817| Best HMM Match : Peptidase_M16_C (HMM E-Value=1.6e-36)
          Length = 888

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +1

Query: 121 VRPHPKQLPNIVHFHCSMEMTKYD 192
           V P P  LP + H    +E T YD
Sbjct: 711 VNPGPTPLPELAHVSIGLESTSYD 734


>SB_30042| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 241

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 12/50 (24%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = +1

Query: 142 LPNIVHFHCSMEMTKYDIK-NYLQKIYEVPVVDVRTKINXGKLKKMLSRL 288
           +PN + F+ ++ ++++  K ++  + Y    VD+R  +    +K+MLS++
Sbjct: 76  VPNAIMFYAAVTVSRFLRKRSHSNRRYHPKDVDIRNHMYKATVKQMLSKI 125


>SB_3674| Best HMM Match : Retrotrans_gag (HMM E-Value=1.7e-06)
          Length = 882

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 7/75 (9%)
 Frame = +2

Query: 14  LLNTSNFN--NVH-----TAGTPFIKEETHNLXYFCRIFG*N*YDHIQNNCLTSCIFIVL 172
           ++NTS+FN  N +     T   PF+   T +L    +IFG N    +      SCI    
Sbjct: 686 IINTSDFNFDNQNNGTDVTVNVPFLT--TDDLMLHGQIFGHNIDLLVDTGAAISCISSST 743

Query: 173 WK*LNMTLKIIYKKF 217
           W+ LN T  +  + F
Sbjct: 744 WRRLNTTNNLQLRDF 758


>SB_54838| Best HMM Match : Vitellogenin_N (HMM E-Value=4.76441e-44)
          Length = 2581

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -1

Query: 132  MWSY*FHPKIRQKYXKLWVSSLINGVPAVWT 40
            MWSY    +  Q+Y K  VS++   + AVWT
Sbjct: 1937 MWSY--LSRGEQRYAKFNVSAMNKTIEAVWT 1965


>SB_51094| Best HMM Match : VWA (HMM E-Value=0)
          Length = 3544

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +1

Query: 184  KYDIKNYLQKIYEVPVVDVRTKINXGKLKKMLSRL 288
            K D++    KI  VP++D+RT ++  KL+ + S L
Sbjct: 2165 KEDVRRNSWKII-VPIMDIRTGLSSEKLRNVSSML 2198


>SB_15811| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 248

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
 Frame = +1

Query: 136 KQLPNIVHFH----CSMEMTKYDIKNYLQKIYEVPVVDVRTKINXGKLKKMLSR 285
           ++  N++H H    C++E  K  +    +K  E  + + + KI+    KKM+ R
Sbjct: 119 RECENLIHKHKNEECNLEKMKNRVPMDRRKFVEAQLREDQAKISSAHSKKMVQR 172


>SB_32230| Best HMM Match : Keratin_B2 (HMM E-Value=0.22)
          Length = 254

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +2

Query: 8   YPLLNTSNFNNVHTAGTPFIKEETHNLXYFC 100
           +PLL T    N H +G P ++  T    ++C
Sbjct: 69  HPLLRTPTIANTHYSGHPLLQTPTIADTHYC 99



 Score = 25.8 bits (54), Expect = 9.7
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +2

Query: 8   YPLLNTSNFNNVHTAGTPFIKEETHNLXYFCR 103
           +PLL T    N H +G P ++  T    ++C+
Sbjct: 149 HPLLQTPTIANTHYSGHPLLQIPTIADTHYCK 180


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,901,615
Number of Sequences: 59808
Number of extensions: 180338
Number of successful extensions: 315
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 315
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 523129866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)