Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_A06
(348 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49254-1|CAA89220.1| 153|Homo sapiens L23-related gene protein. 80 2e-15
U26596-1|AAC50415.1| 153|Homo sapiens ribosomal protein L23-rel... 80 2e-15
BC027710-1|AAH27710.1| 153|Homo sapiens mitochondrial ribosomal... 80 2e-15
U90426-1|AAB50231.1| 427|Homo sapiens nuclear RNA helicase prot... 28 7.0
CR456352-1|CAG30238.1| 634|Homo sapiens Em:AC005500.4 protein. 28 7.0
BC032128-1|AAH32128.1| 322|Homo sapiens DDX39 protein protein. 28 7.0
BC015923-1|AAH15923.1| 634|Homo sapiens kelch-like 22 (Drosophi... 28 7.0
BC010455-1|AAH10455.1| 316|Homo sapiens DDX39 protein protein. 28 7.0
BC001009-1|AAH01009.1| 427|Homo sapiens DEAD (Asp-Glu-Ala-Asp) ... 28 7.0
AK222850-1|BAD96570.1| 634|Homo sapiens kelch-like variant prot... 28 7.0
AK027266-1|BAB55007.1| 525|Homo sapiens protein ( Homo sapiens ... 28 7.0
AK026614-1|BAB15509.1| 461|Homo sapiens protein ( Homo sapiens ... 28 7.0
>Z49254-1|CAA89220.1| 153|Homo sapiens L23-related gene protein.
Length = 153
Score = 80.2 bits (189), Expect = 2e-15
Identities = 36/73 (49%), Positives = 49/73 (67%)
Frame = +1
Query: 55 YPIYQRGNPQLXVFLPNFWMKLVRPHPKQLPNIVHFHCSMEMTKYDIKNYLQKIYEVPVV 234
YP+Y+ G PQL VF NF+++LVRP Q + V F MEMT+ D++NYL+ IY VPV
Sbjct: 7 YPLYRLGGPQLRVFRTNFFIQLVRPGVAQPEDTVQFRIPMEMTRVDLRNYLEGIYNVPVA 66
Query: 235 DVRTKINXGKLKK 273
VRT++ G K+
Sbjct: 67 AVRTRVQHGSNKR 79
>U26596-1|AAC50415.1| 153|Homo sapiens ribosomal protein
L23-related product protein.
Length = 153
Score = 80.2 bits (189), Expect = 2e-15
Identities = 36/73 (49%), Positives = 49/73 (67%)
Frame = +1
Query: 55 YPIYQRGNPQLXVFLPNFWMKLVRPHPKQLPNIVHFHCSMEMTKYDIKNYLQKIYEVPVV 234
YP+Y+ G PQL VF NF+++LVRP Q + V F MEMT+ D++NYL+ IY VPV
Sbjct: 7 YPLYRLGGPQLRVFRTNFFIQLVRPGVAQPEDTVQFRIPMEMTRVDLRNYLEGIYNVPVA 66
Query: 235 DVRTKINXGKLKK 273
VRT++ G K+
Sbjct: 67 AVRTRVQHGSNKR 79
>BC027710-1|AAH27710.1| 153|Homo sapiens mitochondrial ribosomal
protein L23 protein.
Length = 153
Score = 80.2 bits (189), Expect = 2e-15
Identities = 36/73 (49%), Positives = 49/73 (67%)
Frame = +1
Query: 55 YPIYQRGNPQLXVFLPNFWMKLVRPHPKQLPNIVHFHCSMEMTKYDIKNYLQKIYEVPVV 234
YP+Y+ G PQL VF NF+++LVRP Q + V F MEMT+ D++NYL+ IY VPV
Sbjct: 7 YPLYRLGGPQLRVFRTNFFIQLVRPGVAQPEDTVQFRIPMEMTRVDLRNYLEGIYNVPVA 66
Query: 235 DVRTKINXGKLKK 273
VRT++ G K+
Sbjct: 67 AVRTRVQHGSNKR 79
>U90426-1|AAB50231.1| 427|Homo sapiens nuclear RNA helicase
protein.
Length = 427
Score = 28.3 bits (60), Expect = 7.0
Identities = 17/80 (21%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Frame = +1
Query: 61 IYQRGNPQLXVFLPNFWMKLVRPHPKQLPNIVHF---HCSMEMTKYDIKNYLQKIYEVPV 231
+ ++ P + V P + LVR L N+ HF C + + D++ +Q+I+ +
Sbjct: 159 VMKKNCPHVVVGTPGRILALVRNRSFSLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTP 218
Query: 232 VDVRTKINXGKLKKMLSRLC 291
+ + + L K + +C
Sbjct: 219 HEKQCMMFSATLSKDIRPVC 238
>CR456352-1|CAG30238.1| 634|Homo sapiens Em:AC005500.4 protein.
Length = 634
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +1
Query: 82 QLXVFLPNFWMKLVRPHPKQLPNIVHFHCSMEMTKYDIKNYL 207
+L + L N LV Q+P I+HF C M+ D +N L
Sbjct: 112 ELELSLSNVQETLVAACQLQIPEIIHFCCDFLMSWVDEENIL 153
>BC032128-1|AAH32128.1| 322|Homo sapiens DDX39 protein protein.
Length = 322
Score = 28.3 bits (60), Expect = 7.0
Identities = 17/80 (21%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Frame = +1
Query: 61 IYQRGNPQLXVFLPNFWMKLVRPHPKQLPNIVHF---HCSMEMTKYDIKNYLQKIYEVPV 231
+ ++ P + V P + LVR L N+ HF C + + D++ +Q+I+ +
Sbjct: 159 VLKKNCPHVVVGTPGRILALVRNRSFSLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTP 218
Query: 232 VDVRTKINXGKLKKMLSRLC 291
+ + + L K + +C
Sbjct: 219 HEKQCMMFSATLSKDIRPVC 238
>BC015923-1|AAH15923.1| 634|Homo sapiens kelch-like 22 (Drosophila)
protein.
Length = 634
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +1
Query: 82 QLXVFLPNFWMKLVRPHPKQLPNIVHFHCSMEMTKYDIKNYL 207
+L + L N LV Q+P I+HF C M+ D +N L
Sbjct: 112 ELELSLSNVQETLVAACQLQIPEIIHFCCDFLMSWVDEENIL 153
>BC010455-1|AAH10455.1| 316|Homo sapiens DDX39 protein protein.
Length = 316
Score = 28.3 bits (60), Expect = 7.0
Identities = 17/80 (21%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Frame = +1
Query: 61 IYQRGNPQLXVFLPNFWMKLVRPHPKQLPNIVHF---HCSMEMTKYDIKNYLQKIYEVPV 231
+ ++ P + V P + LVR L N+ HF C + + D++ +Q+I+ +
Sbjct: 159 VLKKNCPHVVVGTPGRILALVRNRSFSLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTP 218
Query: 232 VDVRTKINXGKLKKMLSRLC 291
+ + + L K + +C
Sbjct: 219 HEKQCMMFSATLSKDIRPVC 238
>BC001009-1|AAH01009.1| 427|Homo sapiens DEAD (Asp-Glu-Ala-Asp) box
polypeptide 39 protein.
Length = 427
Score = 28.3 bits (60), Expect = 7.0
Identities = 17/80 (21%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Frame = +1
Query: 61 IYQRGNPQLXVFLPNFWMKLVRPHPKQLPNIVHF---HCSMEMTKYDIKNYLQKIYEVPV 231
+ ++ P + V P + LVR L N+ HF C + + D++ +Q+I+ +
Sbjct: 159 VLKKNCPHVVVGTPGRILALVRNRSFSLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTP 218
Query: 232 VDVRTKINXGKLKKMLSRLC 291
+ + + L K + +C
Sbjct: 219 HEKQCMMFSATLSKDIRPVC 238
>AK222850-1|BAD96570.1| 634|Homo sapiens kelch-like variant
protein.
Length = 634
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +1
Query: 82 QLXVFLPNFWMKLVRPHPKQLPNIVHFHCSMEMTKYDIKNYL 207
+L + L N LV Q+P I+HF C M+ D +N L
Sbjct: 112 ELELSLSNVQETLVAACQLQIPEIIHFCCDFLMSWVDEENIL 153
>AK027266-1|BAB55007.1| 525|Homo sapiens protein ( Homo sapiens
cDNA FLJ14360 fis, clone HEMBA1000488, weakly similar to
RING CANAL PROTEIN. ).
Length = 525
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +1
Query: 82 QLXVFLPNFWMKLVRPHPKQLPNIVHFHCSMEMTKYDIKNYL 207
+L + L N LV Q+P I+HF C M+ D +N L
Sbjct: 112 ELELSLSNVQETLVAACQLQIPEIIHFCCDFLMSWVDEENIL 153
>AK026614-1|BAB15509.1| 461|Homo sapiens protein ( Homo sapiens
cDNA: FLJ22961 fis, clone KAT10214. ).
Length = 461
Score = 28.3 bits (60), Expect = 7.0
Identities = 17/80 (21%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Frame = +1
Query: 61 IYQRGNPQLXVFLPNFWMKLVRPHPKQLPNIVHF---HCSMEMTKYDIKNYLQKIYEVPV 231
+ ++ P + V P + LVR L N+ HF C + + D++ +Q+I+ +
Sbjct: 193 VLKKNCPHVVVGTPGRILALVRNRSFSLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTP 252
Query: 232 VDVRTKINXGKLKKMLSRLC 291
+ + + L K + +C
Sbjct: 253 HEKQCMMFSATLSKDIRPVC 272
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 47,159,696
Number of Sequences: 237096
Number of extensions: 897594
Number of successful extensions: 4943
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4943
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 2026198370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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