Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_A06
         (348 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000263-4|AAG00016.1|  159|Caenorhabditis elegans Hypothetical ...    68   2e-12
U40948-2|AAA81728.1|  147|Caenorhabditis elegans Ribosomal prote...    31   0.30 
U88169-2|AAB42234.1|  342|Caenorhabditis elegans Hypothetical pr...    28   1.6  
Z73971-12|CAC42267.1|  718|Caenorhabditis elegans Hypothetical p...    28   2.1  
Z72515-6|CAA96686.2|  718|Caenorhabditis elegans Hypothetical pr...    28   2.1  
U64598-2|AAK39214.2|  558|Caenorhabditis elegans Hypothetical pr...    27   2.8  
Z81109-5|CAB03251.1|  588|Caenorhabditis elegans Hypothetical pr...    26   6.4  
AF040661-18|AAG24217.1|  336|Caenorhabditis elegans Serpentine r...    26   6.4  

>AF000263-4|AAG00016.1|  159|Caenorhabditis elegans Hypothetical
           protein T08B2.8 protein.
          Length = 159

 Score = 67.7 bits (158), Expect = 2e-12
 Identities = 33/73 (45%), Positives = 47/73 (64%), Gaps = 4/73 (5%)
 Frame = +1

Query: 61  IYQRGNPQLXVFLPNFWMKLVRPHP---KQLP-NIVHFHCSMEMTKYDIKNYLQKIYEVP 228
           ++Q GNPQ  VFLP+FWM +V        +LP N V F     M+++DI+ YL KIY++P
Sbjct: 8   LWQPGNPQRRVFLPDFWMAVVESPSVGRNRLPRNCVKFEVDPRMSRHDIREYLTKIYDLP 67

Query: 229 VVDVRTKINXGKL 267
           V DVRT++  G +
Sbjct: 68  VRDVRTEVQMGDI 80


>U40948-2|AAA81728.1|  147|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 25.1 protein.
          Length = 147

 Score = 30.7 bits (66), Expect = 0.30
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +1

Query: 148 NIVHFHCSMEMTKYDIKNYLQKIYEVPVVDVRTKINXGKLKKMLSRL 288
           N + F  S +  KY IK+ + K+Y V  + V T I   + KK   RL
Sbjct: 85  NTLVFIVSNDANKYQIKDAVHKLYNVQALKVNTLITPLQQKKAYVRL 131


>U88169-2|AAB42234.1|  342|Caenorhabditis elegans Hypothetical
           protein T03F1.6a protein.
          Length = 342

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +1

Query: 145 PNIVHFHCSMEMTKYDIKNYLQKIYEVPVVDVR 243
           PN+ HFHCS+   + D+      +   PV   R
Sbjct: 290 PNLQHFHCSLPHDEIDLSQEFLALLNEPVRKTR 322


>Z73971-12|CAC42267.1|  718|Caenorhabditis elegans Hypothetical
           protein T11A5.6 protein.
          Length = 718

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = +2

Query: 5   YYPLLNTSNFNNVHTAGTPF 64
           +YPLLNTS+F+ +H+  + F
Sbjct: 699 HYPLLNTSSFDPIHSTVSVF 718


>Z72515-6|CAA96686.2|  718|Caenorhabditis elegans Hypothetical
           protein T11A5.6 protein.
          Length = 718

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = +2

Query: 5   YYPLLNTSNFNNVHTAGTPF 64
           +YPLLNTS+F+ +H+  + F
Sbjct: 699 HYPLLNTSSFDPIHSTVSVF 718


>U64598-2|AAK39214.2|  558|Caenorhabditis elegans Hypothetical
           protein C52B9.4 protein.
          Length = 558

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
 Frame = -1

Query: 180 HFHRTMKMHDVRQ-LFWMWSY*FH--PKIRQKYXKLWVSSLINGVPAVWTLLKLLVLSR 13
           HF  T+    +   +F +WS  +H  P  R  + +LWV +    V   + L+ +++L R
Sbjct: 395 HFANTLAFSVIASVIFMLWSMIYHIFPTCRVDWKELWVDTAFWHVLFCFILVVIMILWR 453


>Z81109-5|CAB03251.1|  588|Caenorhabditis elegans Hypothetical
           protein R10D12.8 protein.
          Length = 588

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 154 VHFHCSMEMTKYDIKNYLQK 213
           +HFHC  + TKYD      K
Sbjct: 63  IHFHCLTQNTKYDFFQIFDK 82


>AF040661-18|AAG24217.1|  336|Caenorhabditis elegans Serpentine
           receptor, class h protein60 protein.
          Length = 336

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +1

Query: 145 PNIVHFHCSMEMTKYDIKNYLQKIYEVPVV 234
           PN+++  C    T +D  +YL+  Y V  +
Sbjct: 4   PNLINSTCRENYTYFDSSDYLRNAYHVTAI 33


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,548,405
Number of Sequences: 27780
Number of extensions: 142417
Number of successful extensions: 338
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 337
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 461821634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)