Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_A06
         (348 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   1.8  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    22   1.8  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    22   1.8  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    21   3.2  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           21   3.2  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   4.2  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   5.5  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   5.5  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   5.5  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    20   7.3  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -2

Query: 152 MLGSCFGCG 126
           MLGS FGCG
Sbjct: 130 MLGSLFGCG 138


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -2

Query: 152 MLGSCFGCG 126
           MLGS FGCG
Sbjct: 96  MLGSLFGCG 104


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -2

Query: 152 MLGSCFGCG 126
           MLGS FGCG
Sbjct: 6   MLGSLFGCG 14


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 3.2
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 108 KIRQKYXKLWVSSLINGVPAV 46
           K+++     WVS + NGVP V
Sbjct: 487 KMQKVLIDFWVSFVNNGVPNV 507


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 3.2
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 108 KIRQKYXKLWVSSLINGVPAV 46
           K+++     WVS + NGVP V
Sbjct: 487 KMQKVLIDFWVSFVNNGVPNV 507


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +1

Query: 190 DIKNYLQKIYEVPVVDVRTKINXGKL 267
           D+K  L+ + E  ++D    I  GKL
Sbjct: 311 DLKGDLEGLVEGVIIDCSNHIGRGKL 336


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 20.6 bits (41), Expect = 5.5
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -1

Query: 108 KIRQKYXKLWVSSLINGVPAVWTLLKLLVL 19
           +IRQK    WV    +     W L  LL+L
Sbjct: 70  RIRQKAAGHWVIHPCSSFRFYWDLCMLLLL 99


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 20.6 bits (41), Expect = 5.5
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -1

Query: 108 KIRQKYXKLWVSSLINGVPAVWTLLKLLVL 19
           +IRQK    WV    +     W L  LL+L
Sbjct: 70  RIRQKAAGHWVIHPCSSFRFYWDLCMLLLL 99


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 20.6 bits (41), Expect = 5.5
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -1

Query: 108 KIRQKYXKLWVSSLINGVPAVWTLLKLLVL 19
           +IRQK    WV    +     W L  LL+L
Sbjct: 70  RIRQKAAGHWVIHPCSSFRFYWDLCMLLLL 99


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 20.2 bits (40), Expect = 7.3
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +2

Query: 5   YYPLLNTSNFNNVHTAGTPFIKEETHNLXY 94
           YY  L++ N N V+T      + + +N+ Y
Sbjct: 264 YYSALSSHNLNYVNTEQFVKSQYQANNVHY 293


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,448
Number of Sequences: 438
Number of extensions: 1945
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7936320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)