Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_A04
(652 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase |Schizosacch... 104 1e-23
SPAC1039.07c |||4-aminobutyrate aminotransferase |Schizosaccharo... 53 3e-08
SPAC27F1.05c |||aminotransferase class-III, unknown specificty|S... 44 1e-05
SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces p... 43 4e-05
SPCC777.09c |arg1||acetylornithine aminotransferase|Schizosaccha... 38 0.001
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ... 31 0.14
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 27 1.8
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 27 1.8
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch... 27 1.8
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 27 1.8
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S... 27 2.3
SPAC5H10.08c |pan6||pantoate-beta-alanine ligase |Schizosaccharo... 26 5.4
SPAC26H5.06 |pot1||telomere end-binding protein Pot1 |Schizosacc... 25 7.2
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1... 25 7.2
>SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 474
Score = 104 bits (250), Expect = 1e-23
Identities = 47/103 (45%), Positives = 66/103 (64%)
Frame = +1
Query: 49 VDEVQTGCGPTGKMWCHEHFDLPTSPDVVTFSKKMLTGGFYFTADFKPPHAYRVFNTWMG 228
VDEVQTG G TG +W HE ++LP PD+VTFSKK G ++ PHAY+ FNTWMG
Sbjct: 301 VDEVQTGVGSTGTLWAHEQWNLPYPPDMVTFSKKFQAAGIFYHDLALRPHAYQHFNTWMG 360
Query: 229 DPXKLILLERVLKVIKQENLLDLVNKTGNVLKNGLHDLEKEFP 357
DP + + +L+ I+ ++LL+ V G+ L GL +L ++ P
Sbjct: 361 DPFRAVQSRYILQEIQDKDLLNNVKSVGDFLYAGLEELARKHP 403
Score = 54.4 bits (125), Expect = 1e-08
Identities = 26/56 (46%), Positives = 35/56 (62%)
Frame = +2
Query: 377 RGRGTFLAYNAPTTETXDXINAGLXKNGVLGGVCGVRAIRLRPALIFEPKHAAIYL 544
+G+GTF+A++ + D A + NGV G CGV AIRLRP L+F+ HA I L
Sbjct: 412 KGKGTFIAWDCESPAARDKFCADMRINGVNIGGCGVAAIRLRPMLVFQKHHAQILL 467
>SPAC1039.07c |||4-aminobutyrate aminotransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 448
Score = 53.2 bits (122), Expect = 3e-08
Identities = 35/112 (31%), Positives = 56/112 (50%), Gaps = 7/112 (6%)
Frame = +1
Query: 43 LFVDEVQTGCGPTGKMWCHEHFDLPTSPDVVTFSKKMLTG---GFYFTADFKPPHAYR-- 207
L +DE QTG G TG M+ EH + PD++T SK + G T++ Y
Sbjct: 248 LIIDEAQTGIGRTGSMFSFEHHGIV--PDILTLSKSLGAGTALAAVITSEEIEKVCYDNG 305
Query: 208 --VFNTWMGDPXKLILLERVLKVIKQENLLDLVNKTGNVLKNGLHDLEKEFP 357
+ T DP + VLKV+K++NL++ +G +L++ L L+ + P
Sbjct: 306 FVFYTTHASDPLPAAIGSTVLKVVKRDNLVEKAKISGELLRSDLLRLKDKHP 357
>SPAC27F1.05c |||aminotransferase class-III, unknown
specificty|Schizosaccharomyces pombe|chr 1|||Manual
Length = 484
Score = 44.4 bits (100), Expect = 1e-05
Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 11/117 (9%)
Frame = +1
Query: 40 HLFVDEVQTGCGPTGKMWCHEHFDLPTSPDVVTFSKKMLTG-----GFYFTADF------ 186
+L +DE+QTGCG TGK W E+ ++ PD + F+K G G+ T +
Sbjct: 272 YLVLDEIQTGCGRTGKFWACEYENI--IPDCIAFAKGFSGGLIPFAGYIATEELWNAAYN 329
Query: 187 KPPHAYRVFNTWMGDPXKLILLERVLKVIKQENLLDLVNKTGNVLKNGLHDLEKEFP 357
A+ T+ + L + I Q +LL K G ++ + L+ L+ +FP
Sbjct: 330 SLETAFLHTATYQENTLGLAAGVATIDYIVQNDLLSRCRKLGGIMFDRLNKLQTKFP 386
>SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 438
Score = 42.7 bits (96), Expect = 4e-05
Identities = 33/104 (31%), Positives = 48/104 (46%), Gaps = 7/104 (6%)
Frame = +1
Query: 43 LFV-DEVQTGCGPTGKMWCHEHFDLPTSPDVVTFSKKMLTGGFYFTADFKPPHAYRVF-- 213
LF+ DEVQTG TGKM C EH ++ PDVV K + G + +A F
Sbjct: 242 LFIADEVQTGVARTGKMLCIEHSNV--KPDVVILGKAISGGVYPVSAVLSSREIMLNFEP 299
Query: 214 ----NTWMGDPXKLILLERVLKVIKQENLLDLVNKTGNVLKNGL 333
+T+ G+P + L+V+K+E L + G + L
Sbjct: 300 GTHGSTYGGNPLGAAVSIAALEVVKEEKLTERAAVLGEKFRTAL 343
>SPCC777.09c |arg1||acetylornithine
aminotransferase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 441
Score = 38.3 bits (85), Expect = 0.001
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 43 LFVDEVQTGCGPTGKMWCHEHFDLPTSPDVVTFSKKMLTG 162
L DE+Q G G +G +W H SPD++T +K + G
Sbjct: 260 LIYDEIQCGLGRSGDLWAHSIVKDVASPDIITVAKPLANG 299
>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2344
Score = 31.1 bits (67), Expect = 0.14
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Frame = +1
Query: 130 VVTFSKKMLTGGFY--FTADFKPPHAYRV-FNTWMGDPXKLILLERVLKVIKQENLLDLV 300
+V+ +K LT Y + ADF+ HA + W+GD + L+R L ++ LDL+
Sbjct: 1120 LVSSWEKFLTSNNYSNYLADFETTHAQIMEMKPWVGDTSLITQLKRFLMCLQDNIKLDLI 1179
Query: 301 NKTGNVLKNGLHDLEKEFP 357
K+ + L + H+++ P
Sbjct: 1180 -KSKSFLSD--HNIQLSSP 1195
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +3
Query: 240 IDFTRARSQGHQTGKLAGFSQQDRKRFEKWPTRSGKG 350
+D ++ + GH K G ++ ++FEK T GKG
Sbjct: 16 VDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKG 52
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +3
Query: 240 IDFTRARSQGHQTGKLAGFSQQDRKRFEKWPTRSGKG 350
+D ++ + GH K G ++ ++FEK T GKG
Sbjct: 16 VDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKG 52
>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 61 QTGCGPTGKMWCHEHFDLPTSPDVVTFSKK 150
Q+GCG TG HF+ P VVT +++
Sbjct: 46 QSGCGETGLKHSLVHFEQTLHPIVVTIARQ 75
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +3
Query: 240 IDFTRARSQGHQTGKLAGFSQQDRKRFEKWPTRSGKG 350
+D ++ + GH K G ++ ++FEK T GKG
Sbjct: 16 VDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKG 52
>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1842
Score = 27.1 bits (57), Expect = 2.3
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +1
Query: 187 KPPHAYRVFNTWMGDPXKLILLERVLKVIKQENLLDLVNKTGNVLKNGLHDLEKEF 354
+PP A V +T + K + + +V Q+++ DLV + L DL+KEF
Sbjct: 143 EPPKALEVLHTLVAQKLK----KSIEEVSPQKSIKDLVGGKSTLQNEILGDLQKEF 194
>SPAC5H10.08c |pan6||pantoate-beta-alanine ligase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 283
Score = 25.8 bits (54), Expect = 5.4
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +1
Query: 283 NLLDLVNKTGNVLKNGLHDLEKEFPXSNT*CSWARHV 393
NL ++ K L NG DLEK +NT S R +
Sbjct: 203 NLYKILKKLAQELSNGNGDLEKLIAETNTELSRCRFI 239
>SPAC26H5.06 |pot1||telomere end-binding protein Pot1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 555
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -2
Query: 225 HPRVENSVRVRRFKISSEVESSSQHFLAKGD 133
HP++ ++ R F I +E QH ++KG+
Sbjct: 476 HPQMTLQLKERLFLIWGNLEERIQHHISKGE 506
>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 881
Score = 25.4 bits (53), Expect = 7.2
Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Frame = -3
Query: 377 EHYVLLXGNSFSRSCRPFFKTFPVLLTKSSKFSCLMTLRTRSSKI--NLXGSPIHVLK 210
+HYVL + + PF ++L + TLRT +S I N I LK
Sbjct: 579 KHYVLENDSLYKNRVLPFTYCCSIMLVLAYAIGLWFTLRTHASHIWQNFTADDISFLK 636
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,605,268
Number of Sequences: 5004
Number of extensions: 50690
Number of successful extensions: 127
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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