Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_A04
(652 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0202 - 23211342-23211385,23211493-23211579,23211666-232117... 39 0.004
03_01_0509 + 3836284-3836547,3836927-3837157,3837253-3837423,383... 36 0.028
07_03_0274 - 16155728-16156180,16156542-16156958,16157044-16157520 35 0.049
05_01_0220 + 1644608-1645036,1645147-1645578,1645939-1646475 35 0.049
01_05_0686 - 24277812-24277909,24278029-24278081,24278227-242783... 29 2.4
12_01_1062 - 10966940-10967140,10967314-10967413,10968069-109681... 28 5.6
05_05_0248 + 23598461-23598652,23599600-23599744,23599816-235999... 28 5.6
04_04_0038 - 22312479-22313282 28 5.6
03_05_0467 - 24615243-24615384,24619166-24619450,24619516-246195... 28 7.4
>05_05_0202 -
23211342-23211385,23211493-23211579,23211666-23211779,
23211886-23212111,23212222-23212401,23212511-23212654,
23212818-23212979,23213093-23213296,23214109-23214156,
23214601-23214846
Length = 484
Score = 38.7 bits (86), Expect = 0.004
Identities = 34/107 (31%), Positives = 50/107 (46%), Gaps = 7/107 (6%)
Frame = +1
Query: 52 DEVQTGCGPTGK-MWCHEHFDLPTSPDVVTFSKKMLTGGFYFTADFKPPHAYRV------ 210
DEVQ G TG W E + PD+VT +K + G A P +V
Sbjct: 298 DEVQAGVARTGSHFWGFESHGV--IPDIVTMAKG-IGNGIPIGAVVTTPEIAQVLTRRSY 354
Query: 211 FNTWMGDPXKLILLERVLKVIKQENLLDLVNKTGNVLKNGLHDLEKE 351
FNT+ G+P VLKV+++E L + G+ LK L+ L+++
Sbjct: 355 FNTFGGNPVSTAGGHAVLKVLEKEKLQENAFVVGSYLKERLNKLKEK 401
>03_01_0509 +
3836284-3836547,3836927-3837157,3837253-3837423,
3838379-3838522,3838640-3838819,3838926-3839151,
3839326-3839439,3839541-3839627,3839711-3839754
Length = 486
Score = 35.9 bits (79), Expect = 0.028
Identities = 33/106 (31%), Positives = 52/106 (49%), Gaps = 6/106 (5%)
Frame = +1
Query: 52 DEVQTGCGPTGK-MWCHEHFDLPTSPDVVTFSKK----MLTGGFYFTADFKPPHAYRV-F 213
DEVQ+G G TG W + D+ PD+VT +K + G T + A ++ F
Sbjct: 300 DEVQSGFGRTGSHYWGFQTQDV--IPDIVTMAKGIGNGLPLGAVVTTPEIANVLAQKIQF 357
Query: 214 NTWMGDPXKLILLERVLKVIKQENLLDLVNKTGNVLKNGLHDLEKE 351
NT+ G+P + VLKV+ +E G+ L N L +L+++
Sbjct: 358 NTFGGNPVCSVGGLAVLKVLDKEKRQAHCADVGSHLVNRLKELQQK 403
>07_03_0274 - 16155728-16156180,16156542-16156958,16157044-16157520
Length = 448
Score = 35.1 bits (77), Expect = 0.049
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +1
Query: 43 LFVDEVQTGCGPTGKMWCHEHFDLPTSPDVVTFSKKMLTG 162
L DEVQ G G TG +W +E + + PD++T +K + G
Sbjct: 294 LVFDEVQCGLGRTGYLWAYEAYGV--VPDIMTLAKPLAGG 331
>05_01_0220 + 1644608-1645036,1645147-1645578,1645939-1646475
Length = 465
Score = 35.1 bits (77), Expect = 0.049
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +1
Query: 43 LFVDEVQTGCGPTGKMWCHEHFDLPTSPDVVTFSKKMLTG 162
L DEVQ G G TG +W +E + + PD++T +K + G
Sbjct: 283 LVFDEVQCGLGRTGYLWAYEAYGV--LPDIMTLAKPLAGG 320
>01_05_0686 -
24277812-24277909,24278029-24278081,24278227-24278309,
24278353-24278401,24278466-24278514,24279455-24280418
Length = 431
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -3
Query: 413 WEHYKPRTCLAHEHY-VLLXGNSFSRSCRPF 324
WE + C+ H H VLL +S + CRPF
Sbjct: 51 WEDVRCPVCMDHPHNAVLLVCSSHEKGCRPF 81
>12_01_1062 -
10966940-10967140,10967314-10967413,10968069-10968132,
10968301-10968373,10968467-10968612,10969625-10969667,
10969712-10969902,10970706-10970892,10971225-10971384,
10971483-10971616,10972525-10972530
Length = 434
Score = 28.3 bits (60), Expect = 5.6
Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 1/89 (1%)
Frame = +1
Query: 70 CGPTGKMWCHEHFDLPTSPDVVTFSKKMLTGGFYFTADF-KPPHAYRVFNTWMGDPXKLI 246
CGPTG + H FDL +S + +M+ F + + +PP + +G+ L
Sbjct: 291 CGPTGVGFLHGKFDLLSSMEPFLGGGEMIADVFQDKSTYAEPPSRFEAGTPAIGEAIGLG 350
Query: 247 LLERVLKVIKQENLLDLVNKTGNVLKNGL 333
L I + + + N+ L L
Sbjct: 351 TAIDYLSQIGMQKIHEYENELATYLYESL 379
>05_05_0248 +
23598461-23598652,23599600-23599744,23599816-23599966,
23600049-23600174,23600253-23600333,23600706-23600898,
23600990-23601260,23601807-23602000,23602086-23602105,
23602352-23602394
Length = 471
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/55 (30%), Positives = 26/55 (47%)
Frame = +2
Query: 254 SAFSRSSNRKTCWI*STRPETF*KMAYTIWKRSSLXVIHSVRGRGTFLAYNAPTT 418
+AFSR +NR+ C++ + E + Y K + + SV G F A TT
Sbjct: 108 AAFSRETNRRICFLNGSPDEVIRSLFYN--KNNESLITVSVYGSENFSALRCRTT 160
>04_04_0038 - 22312479-22313282
Length = 267
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -3
Query: 413 WEHYKPRTCLAHEHY-VLLXGNSFSRSCRPF 324
W+ CL H H VLL +S S+ CRP+
Sbjct: 47 WKRATCSICLEHPHKAVLLLCSSHSKGCRPY 77
>03_05_0467 -
24615243-24615384,24619166-24619450,24619516-24619596,
24619807-24619904,24620038-24620190,24620705-24620760,
24620844-24621003,24621416-24621646,24621795-24621903,
24622642-24622799
Length = 490
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +1
Query: 43 LFVDEVQTGCGPTGKMWCHEHFDLPTSPDVVTFSKKMLTG 162
+ DE+QTG TGKM + ++ PDVV K + G
Sbjct: 261 MIADEIQTGIARTGKMLACDWENI--RPDVVILGKALGAG 298
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,141,037
Number of Sequences: 37544
Number of extensions: 339681
Number of successful extensions: 726
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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