Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_A04
         (652 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40870| Best HMM Match : No HMM Matches (HMM E-Value=.)              62   4e-10
SB_12821| Best HMM Match : Aminotran_3 (HMM E-Value=4.3e-10)           40   0.001
SB_19443| Best HMM Match : Adap_comp_sub (HMM E-Value=2.2e-20)         31   0.62 
SB_15859| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_25735| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  

>SB_40870| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 431

 Score = 62.1 bits (144), Expect = 4e-10
 Identities = 26/52 (50%), Positives = 36/52 (69%)
 Frame = +1

Query: 202 YRVFNTWMGDPXKLILLERVLKVIKQENLLDLVNKTGNVLKNGLHDLEKEFP 357
           +R+FNTWMGDP K+ILL  VLKVI+++NL++     G  L  GL  +E+  P
Sbjct: 299 FRIFNTWMGDPNKMILLREVLKVIRKDNLIEYTADVGKELLKGLQYIEERHP 350



 Score = 47.6 bits (108), Expect = 9e-06
 Identities = 24/67 (35%), Positives = 33/67 (49%)
 Frame = +2

Query: 365 IHSVRGRGTFLAYNAPTTETXDXINAGLXKNGVLGGVCGVRAIRLRPALIFEPKHAAIYL 544
           +   RG GTF   + P  ET       +  NGV    CGV+ +R RPALIF  KH  + +
Sbjct: 353 VSKARGLGTFCGIDLPDLETRTKFLGLMRNNGVDMDGCGVKTVRFRPALIFGHKHLDLAV 412

Query: 545 DVLRXTL 565
           + +   L
Sbjct: 413 NTMDSVL 419


>SB_12821| Best HMM Match : Aminotran_3 (HMM E-Value=4.3e-10)
          Length = 252

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 35/110 (31%), Positives = 48/110 (43%), Gaps = 8/110 (7%)
 Frame = +1

Query: 52  DEVQTGCGPTGK-MWCHEHFDLPTSPDVVTFSKKMLTGG----FYFTADFKPPHA---YR 207
           DEVQ G G  G   W  E  D+   PD+VT  K +  G        T +     A     
Sbjct: 136 DEVQVGFGRVGNHFWAFETQDVV--PDIVTLGKPIGNGHPLACVVTTPEISESFAATGMA 193

Query: 208 VFNTWMGDPXKLILLERVLKVIKQENLLDLVNKTGNVLKNGLHDLEKEFP 357
            FNT+ G+P    +   VL VI++E L     K G  L + L  L+++ P
Sbjct: 194 YFNTYGGNPVSCAVGNAVLDVIEEEGLQQHALKVGTQLIDKLKGLQQKHP 243


>SB_19443| Best HMM Match : Adap_comp_sub (HMM E-Value=2.2e-20)
          Length = 216

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 20/54 (37%), Positives = 29/54 (53%)
 Frame = +1

Query: 187 KPPHAYRVFNTWMGDPXKLILLERVLKVIKQENLLDLVNKTGNVLKNGLHDLEK 348
           KPP A     +W GD  K    E  L VI+  NL  +V+ +GNVL++ ++   K
Sbjct: 92  KPPPALTNAVSWRGDNIKYRKNEVFLDVIESVNL--MVSSSGNVLRSEINGTVK 143


>SB_15859| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 970

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +3

Query: 210 FQHVDGGSX*IDFTRARSQGHQTGKLAG 293
           +Q + GGS  ++   AR QGH+TG+ +G
Sbjct: 809 YQRLRGGSGGVENCFARCQGHRTGRYSG 836


>SB_25735| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 303

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +1

Query: 457 RCFGGSMWCTCNSS 498
           R +GGS WCTC SS
Sbjct: 194 RLYGGSSWCTCASS 207


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,417,475
Number of Sequences: 59808
Number of extensions: 385062
Number of successful extensions: 809
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 809
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)