Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_A04
         (652 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g38400.1 68415.m04717 alanine--glyoxylate aminotransferase, p...    41   6e-04
At1g80600.1 68414.m09457 acetylornithine aminotransferase, mitoc...    39   0.003
At4g39660.1 68417.m05608 alanine--glyoxylate aminotransferase, p...    36   0.023
At3g08860.1 68416.m01030 alanine--glyoxylate aminotransferase, p...    36   0.031
At5g46180.1 68418.m05680 ornithine aminotransferase, putative / ...    33   0.22 
At3g01450.1 68416.m00069 expressed protein                             29   2.0  
At1g07430.1 68414.m00793 protein phosphatase 2C, putative / PP2C...    29   2.7  

>At2g38400.1 68415.m04717 alanine--glyoxylate aminotransferase,
           putative / beta-alanine-pyruvate aminotransferase,
           putative / AGT, putative similar to SP|Q64565
           Alanine--glyoxylate aminotransferase 2, mitochondrial
           precursor (EC 2.6.1.44) (AGT 2) (Beta-alanine-pyruvate
           aminotransferase) {Rattus norvegicus}; contains Pfam
           profile PF00202: aminotransferase, class III
          Length = 477

 Score = 41.1 bits (92), Expect = 6e-04
 Identities = 36/110 (32%), Positives = 52/110 (47%), Gaps = 7/110 (6%)
 Frame = +1

Query: 43  LFV-DEVQTGCGPTGKMWCHEHFDLPTSPDVVTFSKKMLTGGFYFTADFKPPHAYRV--- 210
           LF+ DEVQ+G   TG  W  E  ++   PD+VT +K  +  GF   A    P    V   
Sbjct: 288 LFIADEVQSGFARTGNFWGFEAHNV--VPDIVTMAKG-IGNGFPLGAVVTTPEIAGVLTR 344

Query: 211 ---FNTWMGDPXKLILLERVLKVIKQENLLDLVNKTGNVLKNGLHDLEKE 351
              FNT+ G+         VL VI++E L +     G+ LK  L  L+++
Sbjct: 345 RSYFNTFGGNSVSTTAGLAVLNVIEKEKLQENAAMVGSYLKEKLTQLKEK 394


>At1g80600.1 68414.m09457 acetylornithine aminotransferase,
           mitochondrial, putative / acetylornithine transaminase,
           putative / AOTA, putative / ACOAT, putative similar to
           SP|O04866 Acetylornithine aminotransferase,
           mitochondrial precursor (EC 2.6.1.11) (ACOAT)
           (Acetylornithine transaminase) (AOTA) {Alnus glutinosa};
           contains Pfam profile PF00202: aminotransferase, class
           III
          Length = 457

 Score = 38.7 bits (86), Expect = 0.003
 Identities = 29/101 (28%), Positives = 43/101 (42%), Gaps = 6/101 (5%)
 Frame = +1

Query: 43  LFVDEVQTGCGPTGKMWCHEHFDLPTSPDVVTFSKKMLTGGFYFTADFKPPHAYRVFN-- 216
           L  DEVQ G G TG MW +E F +  +PD++T +K  L GG    A           N  
Sbjct: 279 LVFDEVQCGLGRTGLMWAYEAFGV--TPDIMTVAKP-LAGGLPIGAVLVTEKVAETINYG 335

Query: 217 ----TWMGDPXKLILLERVLKVIKQENLLDLVNKTGNVLKN 327
               T+ G P        V+  + + + L  V+  G   ++
Sbjct: 336 DHGSTFAGSPLVCSAAIAVMDKVSKPSFLSSVSNKGRYFRD 376


>At4g39660.1 68417.m05608 alanine--glyoxylate aminotransferase,
           putative / beta-alanine-pyruvate aminotransferase,
           putative / AGT, putative similar to SP|Q64565
           Alanine--glyoxylate aminotransferase 2, mitochondrial
           precursor (EC 2.6.1.44) (AGT 2) (Beta-alanine-pyruvate
           aminotransferase) {Rattus norvegicus}; contains Pfam
           profile PF00202: aminotransferase, class III
          Length = 476

 Score = 35.9 bits (79), Expect = 0.023
 Identities = 34/105 (32%), Positives = 50/105 (47%), Gaps = 6/105 (5%)
 Frame = +1

Query: 52  DEVQTGCGPTGK-MWCHEHFDLPTSPDVVTFSK----KMLTGGFYFTADFKPPHAYRV-F 213
           DEVQTG G TG   W  +  D+   PD+VT +K     +  G    T +     A ++ F
Sbjct: 290 DEVQTGFGRTGSHYWGFQTQDV--VPDIVTMAKGIGNGLPLGAVVTTPEIASVLASKILF 347

Query: 214 NTWMGDPXKLILLERVLKVIKQENLLDLVNKTGNVLKNGLHDLEK 348
           NT+ G+P        VL VI +E   +   + G+ L   L D++K
Sbjct: 348 NTFGGNPVCSAGGLAVLNVIDKEKRQEHCAEVGSHLIQRLKDVQK 392


>At3g08860.1 68416.m01030 alanine--glyoxylate aminotransferase,
           putative / beta-alanine-pyruvate aminotransferase,
           putative / AGT, putative similar to similar to SP|Q64565
           Alanine--glyoxylate aminotransferase 2, mitochondrial
           precursor (EC 2.6.1.44) (AGT 2) (Beta-alanine-pyruvate
           aminotransferase) {Rattus norvegicus}; contains Pfam
           profile PF00202: aminotransferase, class III
          Length = 481

 Score = 35.5 bits (78), Expect = 0.031
 Identities = 33/108 (30%), Positives = 49/108 (45%), Gaps = 7/108 (6%)
 Frame = +1

Query: 52  DEVQTGCGPTGK-MWCHEHFDLPTSPDVVTFSKKMLTGGFYFTADFKPPHAYRV------ 210
           DEVQ+G   TG   W  +   +   PD+VT +K  +  G    A    P    V      
Sbjct: 295 DEVQSGFARTGTHFWGFQSHGV--IPDIVTMAKG-IGNGIPLGAVVTTPEIAGVLSRRSY 351

Query: 211 FNTWMGDPXKLILLERVLKVIKQENLLDLVNKTGNVLKNGLHDLEKEF 354
           FNT+ G+P        VL+V+ +E L +  N  G+ LK  L  L+ ++
Sbjct: 352 FNTFGGNPMCTAAGHAVLRVLHEEKLQENANLVGSHLKRRLTLLKNKY 399


>At5g46180.1 68418.m05680 ornithine aminotransferase, putative /
           ornithine--oxo-acid aminotransferase, putative similar
           to SP|Q92413 Ornithine aminotransferase (EC 2.6.1.13)
           (Ornithine--oxo-acid aminotransferase) [Aspergillus
           nidulans] {Emericella nidulans}; contains Pfam profile
           PF00202: aminotransferase, class III
          Length = 475

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 6/111 (5%)
 Frame = +1

Query: 43  LFVDEVQTGCGPTGKMWCHEHFDLPTSPDVVTFSKKMLTGGFYFTADFKPPHAY------ 204
           +  DEVQ+G   +GKM   +  ++   PD+V   K +  G    +A              
Sbjct: 262 MIADEVQSGLARSGKMLACDWEEI--RPDMVILGKALGGGVIPVSAVLADKDVMLHIKPG 319

Query: 205 RVFNTWMGDPXKLILLERVLKVIKQENLLDLVNKTGNVLKNGLHDLEKEFP 357
           +  +T+ G+P    +    L VI +E L++     G  L+  L++++K+FP
Sbjct: 320 QHGSTFGGNPLASAVAMASLDVIVEEKLVERSASLGEELRIQLNEIKKQFP 370


>At3g01450.1 68416.m00069 expressed protein
          Length = 326

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
 Frame = +1

Query: 109 DLPTSPDVVTFSKKMLTGGFYFTADFKPPHAYRVF--NTWMGDPXKLILLERVLKVIKQE 282
           +LP S   + +  K+L G    TA+ KPP     F  N   GD  +    ERV+  I+  
Sbjct: 11  NLPVSERNIDYKTKLLVGKMNGTAEDKPPQNSVPFDHNHPKGDEIEKPEAERVIVEIEYI 70

Query: 283 NLLDLVNKT--GNVLKNGLHDLEKE 351
              DL N T    VLK+ + +L+ +
Sbjct: 71  ESKDLNNVTQVDAVLKSLVTELDSK 95


>At1g07430.1 68414.m00793 protein phosphatase 2C, putative / PP2C,
           putative similar to GB:CAB90633 from [Fagus sylvatica]
          Length = 442

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = +2

Query: 74  VQPGKCGVMNTSIYRRHPTSSPLARKC*LEDSTSLLILNLRTRTEFSTRGW 226
           V P K  V  T +  R+  +S   R+  +ED+ +L    +R +TEFS   W
Sbjct: 105 VIPSKKTVKETDLRPRYGVASVCGRRRDMEDAVALHPSFVRKQTEFSRTRW 155


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,646,641
Number of Sequences: 28952
Number of extensions: 270200
Number of successful extensions: 630
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)