Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_P23
         (650 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    29   0.025
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    25   0.41 

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 29.5 bits (63), Expect = 0.025
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 331 HITCPLCXGYYIXATTIVECLHSFCRSCII 420
           H+   LC  Y+  A  I+ C++ FCR+ II
Sbjct: 278 HLLFLLCIYYFYCALIILLCIYYFCRAFII 307



 Score = 24.6 bits (51), Expect = 0.71
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = +1

Query: 325 NEHITCPLCXGYYIXATTIVECLHSFCRSCIIKHLKAKSYC 447
           N H+   LC  Y+      + C++ F  + II  +    YC
Sbjct: 190 NMHLLFLLCLDYFTLHLLFLPCIYYFYSAFIIFTIHLLFYC 230


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 25.4 bits (53), Expect = 0.41
 Identities = 17/41 (41%), Positives = 20/41 (48%)
 Frame = -1

Query: 542 KSPGTSL*TMSCSALSSLILGFAEFIIISHTGQ*LFALRCL 420
           K P TSL   S   LS L L +     +SH GQ L   +CL
Sbjct: 357 KLPLTSLSLASAQTLSELDLSWNSISSLSHGGQ-LARFKCL 396


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,798
Number of Sequences: 336
Number of extensions: 3394
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16760905
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)