Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_P23
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   1.9  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   7.8  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   7.8  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   7.8  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +1

Query: 376 TIVECLHSFCRSCIIKHLKAKSYCPVCEMMINSAKPNI 489
           TI + LH FCR      +    Y  +  ++I S +PN+
Sbjct: 455 TIEDLLH-FCRQMYAMKVNNAEYALLTAIVIFSERPNL 491


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 65  FNMLNFTILNATYGKL 18
           FN +NF ILNA   +L
Sbjct: 390 FNEVNFRILNAPVNQL 405


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +1

Query: 286 VAVVPQRTLLGEVNEHITCPLCXGYYIXATTIVECLHS 399
           +A VP     G  +E     LC    + AT  + CL+S
Sbjct: 720 LAFVPIYFGTGNAHETQITTLCVAISLSATVTLVCLYS 757


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +1

Query: 286 VAVVPQRTLLGEVNEHITCPLCXGYYIXATTIVECLHS 399
           +A VP     G  +E     LC    + AT  + CL+S
Sbjct: 810 LAFVPIYFGTGNAHETQITTLCVAISLSATVTLVCLYS 847


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,812
Number of Sequences: 438
Number of extensions: 3620
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)