Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_P18
         (653 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    24   1.1  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    24   1.1  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   1.5  
EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate c...    22   6.0  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 12/54 (22%), Positives = 29/54 (53%)
 Frame = -3

Query: 540 EHGLDGDVHGGRVECFEHDLGHXLSVGLGVEGSLSEQDWVFLGGDTQLIVEGMM 379
           +HG+  +  GG ++C +      +++    E  + + + + L GD + +VEG++
Sbjct: 271 KHGIVIEELGGEIQCVKISALKGINLRELTEAIIVQAELMDLKGDLEGLVEGVI 324


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 99  LKTNSTMCDEEVAALVVDNGSGMCKAGFAGD 191
           LK ++ + D++    + D   GMCK G +GD
Sbjct: 111 LKLDNVLLDQDGHIKIAD--FGMCKEGISGD 139


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -1

Query: 257 PTITALMAGPSHDRGEHGARSIISCETGLA 168
           P +T +    + D GEH   ++   E GLA
Sbjct: 118 PDVTTVELVDATDPGEHNGDTVTDVEAGLA 147


>EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate
           carboxykinase protein.
          Length = 118

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -3

Query: 603 VGDTVAGVQHDTGGTTXRVQREHGLDGDVHG 511
           VGD +A ++ D  G    +  E+G  G   G
Sbjct: 42  VGDDIAWMKFDKEGRLRAINPEYGFFGVAPG 72


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,422
Number of Sequences: 438
Number of extensions: 4678
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)