Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_P14
         (534 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44898| Best HMM Match : Cation_efflux (HMM E-Value=1.1)             31   0.78 
SB_52217| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_54674| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_36665| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.3  
SB_7819| Best HMM Match : LBP_BPI_CETP_C (HMM E-Value=0.04)            27   9.6  
SB_14316| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  

>SB_44898| Best HMM Match : Cation_efflux (HMM E-Value=1.1)
          Length = 641

 Score = 30.7 bits (66), Expect = 0.78
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
 Frame = +1

Query: 370 YEAFKTKYDPQXKHFDALLSAVANS*GNQFLIFPAV---LNLLADMNNLY 510
           +    T  DP   HFDA+ + +    G+  L F AV   LN L D + LY
Sbjct: 332 FTGLNTLLDPSMLHFDAVFTGLNTLLGSSMLYFGAVFTGLNTLLDPSMLY 381


>SB_52217| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 118

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +1

Query: 334 SLKVVXDKLPQXYEAFKTKYDPQXKHFDALLSAVA 438
           +LK   ++L +     K ++ P+ +HFDAL S +A
Sbjct: 5   NLKQQIERLNEDLRKAKEEFTPEMRHFDALQSKIA 39


>SB_54674| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1149

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +1

Query: 334  SLKVVXDKLPQXYEAFKTKYDPQXKHFDALLSAVA 438
            +LK   ++L +     K ++ P+ +HFDAL S +A
Sbjct: 1036 NLKQQIERLNEDLRKAKEEFTPEMRHFDALQSKIA 1070


>SB_36665| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1277

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +2

Query: 125  CKETYSSENDDLDIEALVGNIDSLKAFIGCFLXTSPCDAVSGAFQK 262
            C+ T++    ++ I  LV  ++ L + + C L +SP   V   F+K
Sbjct: 1110 CRLTHNDLPQNIVINDLVNRLEQLASLLLCALLSSPYKQVEQHFEK 1155


>SB_7819| Best HMM Match : LBP_BPI_CETP_C (HMM E-Value=0.04)
          Length = 444

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -1

Query: 243 TASQGDVXKKHPIKAFRESIFPTKASISRSSFSELYVSL 127
           T +Q D+  K+P +  R  ++PT++    S    + VSL
Sbjct: 359 TVTQADLYNKYPDRPVRLKVYPTQSPAISSDVGGVNVSL 397


>SB_14316| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1472

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 18/68 (26%), Positives = 32/68 (47%)
 Frame = +1

Query: 304  LQPRNIYSNVSLKVVXDKLPQXYEAFKTKYDPQXKHFDALLSAVANS*GNQFLIFPAVLN 483
            ++P N    ++L    DKLP   + F   ++PQ  +F    S+V++    Q      V+ 
Sbjct: 1199 IEPTN-RRRLTLTCEWDKLPVYLKTFLKDWEPQLLYFLQTFSSVSHFNSTQGQSLEIVME 1257

Query: 484  LLADMNNL 507
            LL+ +  L
Sbjct: 1258 LLSPLTAL 1265


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,175,375
Number of Sequences: 59808
Number of extensions: 274968
Number of successful extensions: 570
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1203486867
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)