Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_P12
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    48   9e-07
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch...    27   1.8  
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    25   9.5  

>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 48.4 bits (110), Expect = 9e-07
 Identities = 29/80 (36%), Positives = 36/80 (45%), Gaps = 10/80 (12%)
 Frame = +3

Query: 357 DMRREEERLKTFDQ--WPVTFLTPEQLARNGFYYLG--------RGDEVCCAFCKVXIMR 506
           +M    +RL TF +  WP    TPE LA  GFYY          R D V C  C      
Sbjct: 18  EMCNYSKRLDTFQKKKWPRAKPTPETLATVGFYYNPISESNSEERLDNVTCYMCTKSFYD 77

Query: 507 WVEGDDPAADHRRWAPQCPF 566
           W + DDP  +H   +P CP+
Sbjct: 78  WEDDDDPLKEHITHSPSCPW 97



 Score = 35.9 bits (79), Expect = 0.005
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
 Frame = +3

Query: 420 PEQLARNGFYY---LGRGDEVCCAFCKVXIMRWVEGDDPAADHRRWAPQCPF 566
           P  +A +GF Y       D   C +C + +  W   DDP  +H+R    C F
Sbjct: 141 PSVMAASGFVYNPTADAKDAAHCLYCDINLHDWEPDDDPYTEHKRRRADCVF 192


>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 815

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -3

Query: 218 IPRIF*HHQRGGSSIFSNFRQLQLVYFSFFLVTHK 114
           +PR+F   Q G       F  LQLVY+SF ++ ++
Sbjct: 469 LPRVFRAEQPGEFQANHFFYNLQLVYYSFRMLIYR 503


>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 952

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -3

Query: 500 NXYLTESTAHLVAATEVVESVAGQLFRRQKRNGPLIKCFQTFL 372
           N  L+E  AHL  A +  E +  QL   + +   L+  +Q+F+
Sbjct: 563 NSKLSEGRAHLETANKENEILKQQLELSESKLASLLNSYQSFI 605


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,374,716
Number of Sequences: 5004
Number of extensions: 45290
Number of successful extensions: 82
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)