Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_P12
         (652 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0027 - 225670-225870,225989-226126,226315-226392,226523-22...    33   0.20 
11_01_0027 - 199196-199396,199514-199651,200207-200284,200419-20...    33   0.20 
10_07_0132 + 13263577-13263732,13265391-13265456,13265607-132657...    29   4.2  
07_03_1782 + 29477748-29478169,29478257-29478413,29478518-294786...    28   5.6  
09_06_0176 + 21351884-21352693,21352821-21352976,21353425-213536...    27   9.8  
04_04_1399 - 33249210-33249359,33249521-33249597,33249735-332498...    27   9.8  

>12_01_0027 -
           225670-225870,225989-226126,226315-226392,226523-226708,
           226853-226945,227797-227863,228660-228964
          Length = 355

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -3

Query: 473 HLVAATEVVESVAGQLFRRQKRNGPL-IKCFQTFLFTTHVGHIRKEVECVV 324
           HLV AT+    V G+ +R  +++GPL +  F   L +  V H   +V  VV
Sbjct: 285 HLVEATKAARPVLGRYYREPEKSGPLPLHLFGVLLRSLRVDHFVSDVGDVV 335


>11_01_0027 -
           199196-199396,199514-199651,200207-200284,200419-200604,
           200754-200846,201665-201731,202374-202675
          Length = 354

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -3

Query: 473 HLVAATEVVESVAGQLFRRQKRNGPL-IKCFQTFLFTTHVGHIRKEVECVV 324
           HLV AT+    V G+ +R  +++GPL +  F   L +  V H   +V  VV
Sbjct: 284 HLVEATKAARPVLGRYYREPEKSGPLPLHLFGVLLRSLRVDHFVSDVGDVV 334


>10_07_0132 +
           13263577-13263732,13265391-13265456,13265607-13265705,
           13267020-13267084,13267210-13267294,13267389-13267422,
           13267539-13267642,13268085-13268408,13269090-13269605
          Length = 482

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 550 RPSVPLYENKCMPTLGERRP 609
           +P V LY +KC  +LG RRP
Sbjct: 76  QPCVGLYSDKCTSSLGRRRP 95


>07_03_1782 +
           29477748-29478169,29478257-29478413,29478518-29478610,
           29478753-29478938,29479107-29479187,29479788-29479925,
           29480044-29480208
          Length = 413

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 473 HLVAATEVVESVAGQLFRRQKRNGP 399
           HL+ ATE  + V G+ +R   ++GP
Sbjct: 355 HLIEATEAAKGVMGKYYREPDKSGP 379


>09_06_0176 +
           21351884-21352693,21352821-21352976,21353425-21353613,
           21354741-21356354,21356446-21356553,21356649-21357509,
           21357586-21357632,21358591-21358697,21359512-21359630,
           21359706-21359915,21360412-21360693,21360820-21360952,
           21361256-21361413,21362564-21362647,21362949-21363035
          Length = 1654

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 523 ILPPIIGDGRPSVPLYENKC 582
           ILPP + D RP   + ENKC
Sbjct: 879 ILPPAVTDQRPFSEIRENKC 898


>04_04_1399 -
           33249210-33249359,33249521-33249597,33249735-33249814,
           33249904-33250094,33250183-33250469,33250595-33250721,
           33250878-33250994,33251085-33251198,33251510-33251671,
           33252909-33252974,33253098-33253269,33253377-33253584,
           33253728-33253776,33254132-33254305
          Length = 657

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = -3

Query: 650 VCXXXGPTFVXTDSGRLSPSVGIHLFSYKGTLGRPSPMIGGRIVAFDPPHNXY 492
           +C   G  F+    G L+ +VGI +F     + RP  MI G I   D   N +
Sbjct: 474 LCAFAGVIFISVQQG-LAIAVGISIFRVLLQITRPKMMIQGNIKGTDIYRNLH 525


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,713,103
Number of Sequences: 37544
Number of extensions: 311969
Number of successful extensions: 658
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)