Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_P12
         (652 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16819| Best HMM Match : BIR (HMM E-Value=7.5e-30)                   69   4e-12
SB_39662| Best HMM Match : BIR (HMM E-Value=1.2e-19)                   57   1e-08
SB_28819| Best HMM Match : BIR (HMM E-Value=2.6e-32)                   53   2e-07
SB_11949| Best HMM Match : F5_F8_type_C (HMM E-Value=3.2e-11)          29   4.3  

>SB_16819| Best HMM Match : BIR (HMM E-Value=7.5e-30)
          Length = 514

 Score = 68.5 bits (160), Expect = 4e-12
 Identities = 30/72 (41%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
 Frame = +3

Query: 357 DMRREEERLKTFDQWPVTF-LTPEQLARNGFYYLGRGDEVCCAFCKVXIMRWVEGDDPAA 533
           D++ E  RL TF  WP +  + P +L+  GFYYLG  D V C  C V +  W   D P  
Sbjct: 127 DLQSEHHRLTTFVDWPESSPVRPWELSSAGFYYLGDQDSVKCYKCGVALRNWEPDDLPWV 186

Query: 534 DHRRWAPQCPFV 569
           +H +W+P CP V
Sbjct: 187 EHEKWSPHCPLV 198


>SB_39662| Best HMM Match : BIR (HMM E-Value=1.2e-19)
          Length = 314

 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 28/75 (37%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
 Frame = +3

Query: 348 DMPDMRREEERLKTFDQWPVTFLTPE-QLARNGFYYLGRGDEVCCAFCKVXIMRWVEGDD 524
           D  D+     R++TF+ WP T      +LAR GF + GR D V C  CK  + +W   D 
Sbjct: 128 DPNDLNLVGARVRTFNFWPATSSANVFELARAGFVFTGRDDVVECFKCKGTLKQWKVDDR 187

Query: 525 PAADHRRWAPQCPFV 569
           P   HR + P CP +
Sbjct: 188 PIESHREFYPDCPLL 202


>SB_28819| Best HMM Match : BIR (HMM E-Value=2.6e-32)
          Length = 141

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 7/79 (8%)
 Frame = +3

Query: 357 DMRREEERLKTFDQWPVTFL----TPEQLARNGFYYLGRGDE---VCCAFCKVXIMRWVE 515
           +M  E++RL+TF  WP   +    T E++A  GFY+    D+     C  C   +  W  
Sbjct: 9   EMNMEKKRLETFKDWPFNHMDCKCTAEKMAAAGFYHCETDDDPDVARCFVCFKELDGWEP 68

Query: 516 GDDPAADHRRWAPQCPFVR 572
            DDP  +H++ +P+C FV+
Sbjct: 69  EDDPWQEHKKHSPKCEFVK 87


>SB_11949| Best HMM Match : F5_F8_type_C (HMM E-Value=3.2e-11)
          Length = 378

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -3

Query: 515 FDPPHNXYLTESTAHLVAATEVVESVAGQLFRRQKRNGPLIKCFQ 381
           F+  H   L+  T H V + +V  S  G+ ++  K NG +++CFQ
Sbjct: 288 FEAEHG--LSLQTQHWVTSFKVSFSQLGRAYQWYKVNGSIMRCFQ 330


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,178,961
Number of Sequences: 59808
Number of extensions: 358026
Number of successful extensions: 677
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)