Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_P12
         (652 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g55390.1 68418.m06901 hydroxyproline-rich glycoprotein family...    31   0.50 
At5g05580.1 68418.m00606 omega-3 fatty acid desaturase, chloropl...    31   0.50 
At3g11170.1 68416.m01355 omega-3 fatty acid desaturase, chloropl...    30   1.5  

>At5g55390.1 68418.m06901 hydroxyproline-rich glycoprotein family
           protein
          Length = 1332

 Score = 31.5 bits (68), Expect = 0.50
 Identities = 19/55 (34%), Positives = 29/55 (52%)
 Frame = -3

Query: 614 DSGRLSPSVGIHLFSYKGTLGRPSPMIGGRIVAFDPPHNXYLTESTAHLVAATEV 450
           D+G+   S+G  LFSY      P+P+  GR++  D  HN   T+S A     +E+
Sbjct: 546 DAGKSKISLGERLFSYTQ---EPNPVKPGRVIPVDSKHNK--TDSIASKEPGSEI 595


>At5g05580.1 68418.m00606 omega-3 fatty acid desaturase,
           chloroplast, temperature-sensitive (FAD8) identical to
           SP:48622 Temperature-sensitive omega-3 fatty acid
           desaturase, chloroplast precursor (EC 1.14.19.-)
           {Arabidopsis thaliana}; contains Pfam profile PF00487:
           Fatty acid desaturase; identical to cDNA plastid fatty
           acid desaturase GI:1030694
          Length = 435

 Score = 31.5 bits (68), Expect = 0.50
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -3

Query: 473 HLVAATEVVESVAGQLFRRQKRNGPL 396
           HLV ATE  + V G+ +R  K +GPL
Sbjct: 372 HLVEATEAAKPVLGKYYREPKNSGPL 397


>At3g11170.1 68416.m01355 omega-3 fatty acid desaturase, chloroplast
           (FAD7) (FADD) identical to omega-3 fatty acid
           desaturase, chloroplast precursor SP:P46310 [Arabidopsis
           thaliana (Mouse-ear cress)]; identical to Pfam profile
           PF00487: Fatty acid desaturase; identical to cDNA
           plastid fatty acid desaturase GI:809491
          Length = 446

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -3

Query: 473 HLVAATEVVESVAGQLFRRQKRNGPL 396
           HLV ATE  + V G+ +R   ++GPL
Sbjct: 379 HLVEATEAAKPVLGKYYREPDKSGPL 404


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,413,183
Number of Sequences: 28952
Number of extensions: 240386
Number of successful extensions: 525
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 525
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)