Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_P10
(629 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch... 285 5e-78
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc... 284 6e-78
SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharo... 29 0.55
SPBC646.12c |gap1|src1, sar1|GTPase activating protein Gap1|Schi... 29 0.73
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual 28 0.97
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 27 1.7
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz... 26 3.9
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc... 26 3.9
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 5.2
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 26 5.2
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|... 25 6.8
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 25 6.8
SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc... 25 6.8
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|... 25 6.8
SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element Wtf21|Sc... 25 9.0
>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 221
Score = 285 bits (698), Expect = 5e-78
Identities = 129/183 (70%), Positives = 151/183 (82%)
Frame = +3
Query: 78 YCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGRI 257
YCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ++SEALEA RI
Sbjct: 11 YCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQITSEALEAARI 70
Query: 258 CCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVXRVR 437
C NKYLVK GKD FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AFGKP G V RV
Sbjct: 71 CANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVN 130
Query: 438 IGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSXKWGFTKYERDEFDKLREEGRL 617
IGQ +MSVR+ D +A IEALRR ++KFPG+Q+I VS KWGF++Y RDE+ + R G +
Sbjct: 131 IGQVLMSVRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQYARDEYIEKRSRGEI 190
Query: 618 AND 626
D
Sbjct: 191 IPD 193
Score = 25.0 bits (52), Expect = 9.0
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = +2
Query: 47 MGRRPARCYR 76
M RRPARCYR
Sbjct: 1 MARRPARCYR 10
>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 221
Score = 284 bits (697), Expect = 6e-78
Identities = 129/183 (70%), Positives = 151/183 (82%)
Frame = +3
Query: 78 YCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGRI 257
YCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ++SEALEA RI
Sbjct: 11 YCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQITSEALEAARI 70
Query: 258 CCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVXRVR 437
C NKYLVK GKD FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AFGKP G V RV
Sbjct: 71 CANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVN 130
Query: 438 IGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSXKWGFTKYERDEFDKLREEGRL 617
IGQ +MSVR+ D +A IEALRR ++KFPG+Q+I VS KWGF++Y RDE+ + R G +
Sbjct: 131 IGQILMSVRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQYARDEYIEKRSRGEI 190
Query: 618 AND 626
D
Sbjct: 191 IPD 193
Score = 25.0 bits (52), Expect = 9.0
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = +2
Query: 47 MGRRPARCYR 76
M RRPARCYR
Sbjct: 1 MARRPARCYR 10
>SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharomyc
es pombe|chr 2|||Manual
Length = 372
Score = 29.1 bits (62), Expect = 0.55
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = +1
Query: 460 CALVTGGRHRSSRLCAVPSSSSPDVKRSTYQXSGVSQSMNVMSLTSCVKRAAS 618
C L+T C + + SP+++RS Y +G++ S + +T RAA+
Sbjct: 17 CLLITLSIILLGWQCVLLYNHSPEIQRSVYTLTGLAPSSKMAFVTMLTVRAAN 69
>SPBC646.12c |gap1|src1, sar1|GTPase activating protein
Gap1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 766
Score = 28.7 bits (61), Expect = 0.73
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +1
Query: 31 LCKDHHGAPASEMLPATAKINRIRNRGSVGV-YLIPRSVSS 150
+ K H G +S +LP T +++ +RNR S V Y I + S
Sbjct: 1 MTKRHSGTLSSSVLPQTNRLSLLRNRESTSVLYTIDLDMES 41
>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 405
Score = 28.3 bits (60), Expect = 0.97
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +3
Query: 105 SRFCRGVPDP-KIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAG 251
++FC V + KI + +KRA +D LC+ +S + E ++ +LE+G
Sbjct: 45 TKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLESG 94
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 27.5 bits (58), Expect = 1.7
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +3
Query: 129 DPKIRIFDLGKKRATVDDFPLCV-HLVSDEYEQLSSEALEA 248
DPK+R+F KRAT + C LV+ + + S +++A
Sbjct: 320 DPKLRVFPFTTKRATHSELLRCYKELVTPKISHVDSISIKA 360
>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 26.2 bits (55), Expect = 3.9
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +1
Query: 163 RERPLTTFHCACTWCPTNMNS 225
R RP +T H +CT+C + S
Sbjct: 459 RSRPDSTSHASCTYCVARLRS 479
>SPAC25A8.01c ||snf2SR|fun thirty related protein
Fft3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 922
Score = 26.2 bits (55), Expect = 3.9
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 490 SSRLCAVPSSSSPDVKRSTYQXSGVS 567
SS + P+S SPD+K YQ G++
Sbjct: 371 SSFITTPPASFSPDIKLQDYQIIGIN 396
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 25.8 bits (54), Expect = 5.2
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -1
Query: 422 STLRLAKRTTHPSLEPISSS 363
+T +LAKR T PSL P S+
Sbjct: 957 TTTKLAKRITQPSLSPARST 976
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.8 bits (54), Expect = 5.2
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Frame = +3
Query: 150 DLGKKRATVDDFPLCVHLVSDEYEQL---SSEALEAGRICCN--KYLVKNCGK 293
++ KKRA DD + +VS EYE L SS+ ++ N KY+ KN K
Sbjct: 1033 EIEKKRAENDDLQSKLSVVSSEYENLLLISSQTNKSLEDKTNQLKYIEKNVQK 1085
>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1234
Score = 25.4 bits (53), Expect = 6.8
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = -1
Query: 248 CLQSL*AQLFIFVGHQVHAQWKVVNGRSLLTQIEDTDLG 132
CL L L + H++ ++W+ +N R LL + + + G
Sbjct: 940 CLLPLLPALLSELDHKLVSEWRRINDRGLLVEEDAEETG 978
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 25.4 bits (53), Expect = 6.8
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 291 KDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMR 395
+D H+RM ++ FH IN MLS + D + MR
Sbjct: 859 EDNSHLRMSINSFH---INDMLSKSSRDNNRQLMR 890
>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 490
Score = 25.4 bits (53), Expect = 6.8
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = +3
Query: 54 AGQRDATGYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDD 182
A RD+ Y + + S FC+ DP++RI K A D
Sbjct: 358 AASRDSIIYEYSSRHLNSGFCKTYKDPRLRISSFYVKLACSPD 400
>SPAC3A12.05c |taf2||TATA-binding protein associated factor
Taf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1174
Score = 25.4 bits (53), Expect = 6.8
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +1
Query: 115 VGVYLIPRSVSSIWV 159
+GVYLIP++ S +W+
Sbjct: 394 IGVYLIPKAWSDLWL 408
>SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element
Wtf21|Schizosaccharomyces pombe|chr 3|||Manual
Length = 329
Score = 25.0 bits (52), Expect = 9.0
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +1
Query: 382 RLGCVVRLASLRVLXHVFALDSPSCPCALV 471
R+GC + + L ++ +V L CP AL+
Sbjct: 252 RIGCEIEASVLFIMGNVLFLCEMECPGALI 281
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,753,573
Number of Sequences: 5004
Number of extensions: 59520
Number of successful extensions: 196
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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