Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_P10
         (629 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47652| Best HMM Match : Ribosomal_L10e (HMM E-Value=0.0041)         82   3e-16
SB_4321| Best HMM Match : Ank (HMM E-Value=0)                          31   0.58 
SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18)              31   1.0  
SB_45389| Best HMM Match : Peptidase_M13 (HMM E-Value=4.1e-09)         31   1.0  
SB_22013| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.54)           30   1.8  
SB_28115| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_56325| Best HMM Match : Ribosomal_L14e (HMM E-Value=0.84)           29   3.1  
SB_12964| Best HMM Match : RVT_1 (HMM E-Value=5.6e-31)                 29   3.1  
SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                29   3.1  
SB_31467| Best HMM Match : CTP_transf_2 (HMM E-Value=0.85)             28   5.4  
SB_29658| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0012)               28   5.4  
SB_810| Best HMM Match : TAF4 (HMM E-Value=4.7e-31)                    28   5.4  
SB_57196| Best HMM Match : ADAM_spacer1 (HMM E-Value=3.1e-31)          28   7.2  
SB_25165| Best HMM Match : Prominin (HMM E-Value=1.1e-05)              28   7.2  
SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.2  
SB_4930| Best HMM Match : ANF_receptor (HMM E-Value=0)                 27   9.5  
SB_18608| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  

>SB_47652| Best HMM Match : Ribosomal_L10e (HMM E-Value=0.0041)
          Length = 50

 Score = 82.2 bits (194), Expect = 3e-16
 Identities = 39/50 (78%), Positives = 42/50 (84%)
 Frame = +3

Query: 390 MRGAFGKPQGTVXRVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQK 539
           MRGAFGKPQGTV RV IGQ I+S+R+ D  KA  IEALRRAKFKFPGRQK
Sbjct: 1   MRGAFGKPQGTVARVNIGQTIISIRTKDGNKAAAIEALRRAKFKFPGRQK 50


>SB_4321| Best HMM Match : Ank (HMM E-Value=0)
          Length = 915

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 19/66 (28%), Positives = 28/66 (42%)
 Frame = +3

Query: 63  RDATGYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEAL 242
           RD T  CK K   ++R C+G    + R+     K    D+  +C    SDE      E  
Sbjct: 440 RDETRMCKGKGRDETRMCKGEGTDETRMC----KSEGTDETRMCKDEGSDETRMCKDEGT 495

Query: 243 EAGRIC 260
           +  R+C
Sbjct: 496 DETRMC 501


>SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18)
          Length = 1023

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 21/73 (28%), Positives = 26/73 (35%)
 Frame = -3

Query: 441 QCEHVXQYPEACQTHHASQSGAYQLQRMITFY*CG*RGKGEVSCGYGTDPFRSSLRGTYC 262
           +C  V Q P AC   + S  GA +       Y C    K  V CG G          T C
Sbjct: 535 KCPDVTQAPVACTNGYYSGDGATECTLCPAGYSCADATKSPVPCGKGYYSTNGQTSCTEC 594

Query: 261 SRYVLPPKPLSSA 223
           S     P  L ++
Sbjct: 595 SAGFYCPVELGTS 607


>SB_45389| Best HMM Match : Peptidase_M13 (HMM E-Value=4.1e-09)
          Length = 177

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 17/40 (42%), Positives = 22/40 (55%)
 Frame = +3

Query: 240 LEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLS 359
           L    I C  Y  KN  +D   +RM +HP H IRIN ++S
Sbjct: 115 LSYAHIFCGSYS-KNAAEDI--VRMSVHPLHPIRINGVVS 151


>SB_22013| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.54)
          Length = 341

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 18/71 (25%), Positives = 31/71 (43%)
 Frame = -3

Query: 234 LSSAVHIRRTPSARTVESRQRSLSSYPNRRYGSWDQVHPDRTSISDTVYFCSSR*HLAGR 55
           L++ +H R       V S   S++++P R YGS   +    +    + Y      ++ G 
Sbjct: 258 LNTTIHNRSNYDIPGVLSPSSSINTHPTRSYGSQGALRSSNSFNRSSSY---PNVYIPGT 314

Query: 54  RPMVIFTK*HH 22
            P  +FT  HH
Sbjct: 315 TPPALFTSGHH 325


>SB_28115| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 698

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -3

Query: 243 PKPLSSAVHIRRTPSARTVESRQRSLSSYPNRRYGSWDQ 127
           PK  SS V+  RT  AR    ++R++  Y  ++YG W Q
Sbjct: 295 PKFFSSIVYYGRT--ARFDYGKRRNMKRYGKKKYGKWRQ 331


>SB_56325| Best HMM Match : Ribosomal_L14e (HMM E-Value=0.84)
          Length = 650

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -2

Query: 271 YLLQQIRPASKASELSCSYSSDTKCTHSGKSSTVALFLPKSKIR 140
           Y+++QI+ ASK   L     + T C  + K S V  F+ K K R
Sbjct: 252 YIVKQIQVASKVKVLKAKLENQTLCQQT-KRSKVTDFISKQKSR 294


>SB_12964| Best HMM Match : RVT_1 (HMM E-Value=5.6e-31)
          Length = 1273

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -2

Query: 271  YLLQQIRPASKASELSCSYSSDTKCTHSGKSSTVALFLPKSKIR 140
            Y+++QI+ ASK   L     + T C  + K S V  F+ K K R
Sbjct: 1020 YIVKQIQVASKVKVLKAKLENQTLCQQT-KRSKVTDFISKQKSR 1062


>SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 7381

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = +1

Query: 61   SEMLPATAKINRIRNRGSVGVYLIPRSVSSIWV 159
            S   P+ A++NR+ +RG +G ++  RS ++ W+
Sbjct: 3776 SNAKPSQARLNRVFSRGRLGSWIASRSDNNQWL 3808


>SB_31467| Best HMM Match : CTP_transf_2 (HMM E-Value=0.85)
          Length = 1459

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
 Frame = +1

Query: 25  VSLCKDHHGAPASEMLPATAKINRIRNRGSVGVYLIPRSVS-----SIWVRRERPLTTFH 189
           + LC D  G PAS ++P+    +R+   G V +     SVS     SIW      ++   
Sbjct: 214 MELCVDGPGQPASILMPSA---SRVCKSGPVNLVPYSSSVSVSLGQSIWYHSHPSMSVSL 270

Query: 190 CACTWCPTN 216
           C   W  T+
Sbjct: 271 CQSIWYHTH 279


>SB_29658| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0012)
          Length = 450

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 15/88 (17%)
 Frame = -3

Query: 330 GKGEVSCGYGTDPFRS-SLRGTYCSRYVLPPK----PLSSAVHIRRTPSARTVES----- 181
           G    + GY   P+ + S R  Y +   LPP+    P SS + ++  P   + E+     
Sbjct: 359 GNYSATPGYERVPYANGSERNGYYNGTYLPPQGVITPRSSPLTVQEDPMNGSRENGLSNG 418

Query: 180 -----RQRSLSSYPNRRYGSWDQVHPDR 112
                RQ    SY +RRYG ++  +PD+
Sbjct: 419 HSDSRRQPMRLSYDSRRYGGYEAYYPDQ 446


>SB_810| Best HMM Match : TAF4 (HMM E-Value=4.7e-31)
          Length = 883

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = +1

Query: 427 HVFALDSPSCPCALVTGGRHRSSRLCAVPSSSSPDVKRSTYQXSGVSQSMNVMS 588
           HV A   P  P + +    + +S   A+ +SS+P +  S  Q +  + + N  S
Sbjct: 261 HVIANQHPPAPVSQLQSNSNNASAARAITTSSNPSISTSVLQGNLSTNARNTAS 314


>SB_57196| Best HMM Match : ADAM_spacer1 (HMM E-Value=3.1e-31)
          Length = 718

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 91  NRIRNRGSVGVYLIPRSVSSIWVRRERPLTTF 186
           N++  +G V   LIP+   +I VR  +P T+F
Sbjct: 326 NQLAGKGYVEAALIPKGARNIRVREVKPCTSF 357


>SB_25165| Best HMM Match : Prominin (HMM E-Value=1.1e-05)
          Length = 726

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +2

Query: 398 CVWQASGYCXTCSHWTAHHV 457
           C W  +G C  C HW   HV
Sbjct: 79  CYWIRTGCCHLCWHWRPLHV 98


>SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2077

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/55 (21%), Positives = 25/55 (45%)
 Frame = +3

Query: 396  GAFGKPQGTVXRVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSXKW 560
            G  G+P G+V  +      +++++  +W   + E++  A + FP       S  W
Sbjct: 1109 GVDGRPSGSVEILGSRDSFVAIQNGRQWMLDIEESISIAFYVFPNNSLGNTSRNW 1163


>SB_4930| Best HMM Match : ANF_receptor (HMM E-Value=0)
          Length = 1127

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -2

Query: 253  RPASKASELSCSYSSDTKCTHSGKSSTVALFLPKSKIR 140
            R +S+ S+ SC+ S  +    SGK   + LF  KS+ R
Sbjct: 983  RKSSRTSQRSCASSMSSSSAESGKLEQLNLFDGKSRKR 1020


>SB_18608| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 574

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +3

Query: 441 GQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSXKWG 563
           G  + +VR +DR K ++++AL      +P    + V+ K+G
Sbjct: 516 GGGVNTVRLTDRTKTEMLKALWDVSVSYPKGHAVLVAYKYG 556


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,726,123
Number of Sequences: 59808
Number of extensions: 507239
Number of successful extensions: 1462
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1461
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)