Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_P10
         (629 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical pr...   285   1e-77
AF045641-2|AAC02578.2| 1370|Caenorhabditis elegans Hypothetical ...    30   1.2  
Z66511-7|CAD57693.1|  567|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z46791-1|CAA86761.1|  476|Caenorhabditis elegans Hypothetical pr...    28   4.8  
AF099919-10|AAC68792.1|  205|Caenorhabditis elegans Max-like pro...    28   4.8  
U50199-4|AAA91264.2|  142|Caenorhabditis elegans Abnormal cell l...    27   8.4  
M77697-6|AAA27901.2|  603|Caenorhabditis elegans Hypothetical pr...    27   8.4  

>Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical
           protein F10B5.1 protein.
          Length = 214

 Score =  285 bits (700), Expect = 1e-77
 Identities = 130/183 (71%), Positives = 149/183 (81%)
 Frame = +3

Query: 78  YCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGRI 257
           Y KNKPYPKSRFCRGVPD KIRIFDLG KRA VD FP CVH++S+E E LSSEALEA RI
Sbjct: 11  YIKNKPYPKSRFCRGVPDAKIRIFDLGNKRANVDTFPACVHMMSNEREHLSSEALEAARI 70

Query: 258 CCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVXRVR 437
           C NKY+VKNCGKD FH+R+R HPFHV RINKMLSCAGADRLQTGMRGA+GKPQG V RV 
Sbjct: 71  CANKYMVKNCGKDGFHLRVRKHPFHVTRINKMLSCAGADRLQTGMRGAYGKPQGLVARVD 130

Query: 438 IGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSXKWGFTKYERDEFDKLREEGRL 617
           IG  + S+R  +      IEA RRAKFKFPGRQ I  S KWGFTK++R++++++R EGRL
Sbjct: 131 IGDILFSMRIKEGNVKHAIEAFRRAKFKFPGRQIIVSSRKWGFTKWDREDYERMRAEGRL 190

Query: 618 AND 626
            +D
Sbjct: 191 RSD 193



 Score = 28.3 bits (60), Expect = 4.8
 Identities = 10/13 (76%), Positives = 12/13 (92%)
 Frame = +2

Query: 47 MGRRPARCYRLLQ 85
          MGRRPARCYR ++
Sbjct: 1  MGRRPARCYRYIK 13


>AF045641-2|AAC02578.2| 1370|Caenorhabditis elegans Hypothetical
           protein F53H1.4a protein.
          Length = 1370

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 18/62 (29%), Positives = 31/62 (50%)
 Frame = +1

Query: 37  KDHHGAPASEMLPATAKINRIRNRGSVGVYLIPRSVSSIWVRRERPLTTFHCACTWCPTN 216
           K   G+P+S+  P  +       R +VGV    + +   W RR+  L  ++ AC+WC  N
Sbjct: 306 KKDTGSPSSKNAPLFSPSKWGEKRIAVGV----KKMEDAWKRRD--LELYNEACSWCEKN 359

Query: 217 MN 222
           ++
Sbjct: 360 LS 361


>Z66511-7|CAD57693.1|  567|Caenorhabditis elegans Hypothetical
           protein F07A11.6d protein.
          Length = 567

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = -1

Query: 482 LPPVTRAHGHDGLSNANTXYSTLRLAKRTTHPSLEPISSSA 360
           +P VT A   + LSN  T  ST  LA   T  +L P+S  A
Sbjct: 46  VPVVTTASTPNPLSNLETLLSTASLANLATGGALNPLSMLA 86


>Z46791-1|CAA86761.1|  476|Caenorhabditis elegans Hypothetical
           protein C09G5.2 protein.
          Length = 476

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 412 GLPNAPRIPVWSLSAPA 362
           G PN+P +P+W LS P+
Sbjct: 232 GFPNSPLLPIWLLSYPS 248


>AF099919-10|AAC68792.1|  205|Caenorhabditis elegans Max-like
           protein 2 protein.
          Length = 205

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +3

Query: 108 RFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGR 254
           R C  +   K  I D  K+ A ++     + +++ EYEQ++S   +AG+
Sbjct: 93  RACDFMSQLKTDISDADKQLAQLNAQAAALEMIASEYEQMASSVPDAGQ 141


>U50199-4|AAA91264.2|  142|Caenorhabditis elegans Abnormal cell
           lineage protein 32 protein.
          Length = 142

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 433 FALDSPSCPCALVTGGRHRSSRLCAVPSSSSPDVKR 540
           F+LDSP+ P +L  GG     + C    + SP + R
Sbjct: 36  FSLDSPNYPDSLSNGGGKDDKKKCRRYKTPSPQLLR 71


>M77697-6|AAA27901.2|  603|Caenorhabditis elegans Hypothetical
           protein B0303.9 protein.
          Length = 603

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = -3

Query: 141 GSWDQVHPDRTSISDTVYFCSSR*HLAGRRPMVIFTK 31
           G W  +H    +++  +  C  R   + +RPM I+ K
Sbjct: 179 GDWTHLHKCAVALNQLIDMCRGRSSSSNQRPMSIYAK 215


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,579,937
Number of Sequences: 27780
Number of extensions: 354677
Number of successful extensions: 914
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 914
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)