Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_P10
(629 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) / Wi... 280 6e-76
At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Near... 279 1e-75
At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C) cont... 277 3e-75
At5g47870.1 68418.m05914 expressed protein 29 3.4
At4g02180.1 68417.m00290 DC1 domain-containing protein contains ... 29 3.4
At2g25180.1 68415.m03011 two-component responsive regulator fami... 29 3.4
At5g24280.1 68418.m02856 expressed protein ; expression supporte... 28 4.4
At2g25800.1 68415.m03096 expressed protein 28 4.4
At5g55800.1 68418.m06954 DC1 domain-containing protein contains ... 28 5.9
At5g02360.1 68418.m00159 DC1 domain-containing protein contains ... 27 7.8
At4g21490.1 68417.m03107 pyridine nucleotide-disulphide oxidored... 27 7.8
At4g16835.1 68417.m02541 pentatricopeptide (PPR) repeat-containi... 27 7.8
>At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) /
Wilm's tumor suppressor protein-related similar to tumor
suppressor GI:575354 from [Oryza sativa]
Length = 220
Score = 280 bits (686), Expect = 6e-76
Identities = 133/192 (69%), Positives = 151/192 (78%), Gaps = 2/192 (1%)
Frame = +3
Query: 57 GQRDATGY--CKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLS 230
G+R A Y K KPYPKSR+CRGVPDPKIRI+D+G KR VD+FP CVHLVS E E +S
Sbjct: 2 GRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENVS 61
Query: 231 SEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGK 410
SEALEA RI CNKY+VK+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGK
Sbjct: 62 SEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGK 121
Query: 411 PQGTVXRVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSXKWGFTKYERDEF 590
GT RV IGQ ++SVR D EALRRAKFKFPGRQKI VS KWGFTK+ R +F
Sbjct: 122 ALGTCARVAIGQVLLSVRCKDAHGHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRADF 181
Query: 591 DKLREEGRLAND 626
KLR+E R+ D
Sbjct: 182 TKLRQEKRVVPD 193
Score = 27.9 bits (59), Expect = 5.9
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = +2
Query: 47 MGRRPARCYRLLQ 85
MGRRPARCYR ++
Sbjct: 1 MGRRPARCYRQIK 13
>At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Nearly
identical to ribosomal protein L10.e, Wilm's tumor
suppressor homologue, gi|17682 (Z15157), however
differences in sequence indicate this is a different
member of the L10 family
Length = 221
Score = 279 bits (683), Expect = 1e-75
Identities = 132/192 (68%), Positives = 151/192 (78%), Gaps = 2/192 (1%)
Frame = +3
Query: 57 GQRDATGY--CKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLS 230
G+R A Y K KPYPKSR+CRGVPDPKIRI+D+G KR VD+FP CVHLVS E E +S
Sbjct: 2 GRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPYCVHLVSWEKENVS 61
Query: 231 SEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGK 410
SEALEA RI CNKY+VK+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGK
Sbjct: 62 SEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGK 121
Query: 411 PQGTVXRVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSXKWGFTKYERDEF 590
GT RV IGQ ++SVR D EALRRAKFKFPGRQKI VS KWGFTK+ R ++
Sbjct: 122 ALGTCARVAIGQVLLSVRCKDAHGHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRADY 181
Query: 591 DKLREEGRLAND 626
KLR+E R+ D
Sbjct: 182 TKLRQEKRIVPD 193
Score = 27.9 bits (59), Expect = 5.9
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = +2
Query: 47 MGRRPARCYRLLQ 85
MGRRPARCYR ++
Sbjct: 1 MGRRPARCYRQIK 13
>At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C)
contains Pfam profile: PF00826: Ribosomal L10
Length = 221
Score = 277 bits (680), Expect = 3e-75
Identities = 132/192 (68%), Positives = 149/192 (77%), Gaps = 2/192 (1%)
Frame = +3
Query: 57 GQRDATGY--CKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLS 230
G+R A Y K KPYPKSR+CRGVPDPKIRI+D+G KR VD+FP CVHLVS E E +S
Sbjct: 2 GRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENVS 61
Query: 231 SEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGK 410
SEALEA RI CNKY+VK+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGK
Sbjct: 62 SEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGK 121
Query: 411 PQGTVXRVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSXKWGFTKYERDEF 590
GT RV IGQ ++SVR D EALRRAKFKFPGRQKI VS KWGFTK+ R E+
Sbjct: 122 ALGTCARVAIGQVLLSVRCKDNHGVHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRAEY 181
Query: 591 DKLREEGRLAND 626
KLR R+ D
Sbjct: 182 TKLRAMKRIVPD 193
Score = 27.9 bits (59), Expect = 5.9
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = +2
Query: 47 MGRRPARCYRLLQ 85
MGRRPARCYR ++
Sbjct: 1 MGRRPARCYRQIK 13
>At5g47870.1 68418.m05914 expressed protein
Length = 199
Score = 28.7 bits (61), Expect = 3.4
Identities = 20/73 (27%), Positives = 30/73 (41%)
Frame = +3
Query: 309 RMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVXRVRIGQPIMSVRSSDRWKAQ 488
R++L PF + +N+ + C+G G+ G + V PI SS
Sbjct: 23 RIKLSPFRTVAVNRGVRCSGG-----GVGGGDAGKKKAVPNSNYVVPIDKFSSSSSITRP 77
Query: 489 VIEALRRAKFKFP 527
+IE LR K P
Sbjct: 78 LIEILRDLNKKIP 90
>At4g02180.1 68417.m00290 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 989
Score = 28.7 bits (61), Expect = 3.4
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +3
Query: 231 SEALEAGRIC--CNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSC 362
S+A+ G C C+ + K CG+ I+ HP H +++ C
Sbjct: 65 SKAVSVGYYCKSCDFFAHKKCGESSEFIQHPSHPNHTLQLRSSEGC 110
>At2g25180.1 68415.m03011 two-component responsive regulator family
protein / response regulator family protein contains
Pfam profile: PF00072 response regulator receiver domain
Length = 596
Score = 28.7 bits (61), Expect = 3.4
Identities = 11/49 (22%), Positives = 23/49 (46%)
Frame = +1
Query: 43 HHGAPASEMLPATAKINRIRNRGSVGVYLIPRSVSSIWVRRERPLTTFH 189
H GAPA P + R+ + +GV + + ++++ + + FH
Sbjct: 292 HGGAPAMRSFPPNGILGRLNSSSGIGVRSLSSPPAGMFLQNQTDIGKFH 340
>At5g24280.1 68418.m02856 expressed protein ; expression supported by
MPSS
Length = 1634
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 207 SDEYEQLSSEALEAGRICCNKYLV 278
SDEY + SEA GR N++LV
Sbjct: 1431 SDEYRKFQSEAASLGRSITNRFLV 1454
>At2g25800.1 68415.m03096 expressed protein
Length = 996
Score = 28.3 bits (60), Expect = 4.4
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +1
Query: 1 KLLAFEVVVSLCKDHHGAPASEMLPATAKINRIRNRGSVGVYLIPRSVSS 150
+L A+E+ V+ C+ G P S + + A +N+ GS I RS++S
Sbjct: 55 RLTAYEIFVAACRSATGKPLSSAV-SVAVLNQDSPNGSPASPAIQRSLTS 103
>At5g55800.1 68418.m06954 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 578
Score = 27.9 bits (59), Expect = 5.9
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +3
Query: 255 ICCNKYLVKNCGKDQFHIRMRLHPFHVIRI 344
+ C K K C + F I HPFH +R+
Sbjct: 107 LICEKMFHKECVESPFEIIHPSHPFHSLRL 136
>At5g02360.1 68418.m00159 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 342
Score = 27.5 bits (58), Expect = 7.8
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = +3
Query: 159 KKRATVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCG--KDQFHIRMRLHPFH 332
KK + PL + +++ EYE GR CCN ++CG + ++ + P+H
Sbjct: 255 KKHHALRPHPLTLTVITSEYEG------NVGRFCCNACQRESCGFVYEDLGAKIGVLPYH 308
>At4g21490.1 68417.m03107 pyridine nucleotide-disulphide
oxidoreductase family protein similar to GI:3718005
alternative NADH-dehydrogenase {Yarrowia lipolytica};
contains Pfam profile PF00070: Pyridine
nucleotide-disulphide oxidoreductase
Length = 568
Score = 27.5 bits (58), Expect = 7.8
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = +3
Query: 417 GTVXRVRIGQPIMSVRSSDRWKAQVIEALRRAKFKF-PGRQKIYVSXKWGFTKYERDEFD 593
GTV + +PI ++ + +EA FK PG +K+Y K G + EFD
Sbjct: 90 GTVEARSVVEPIRNIARKQNVEMSFLEA---ECFKIDPGSKKVYCRSKQGVNSKGKKEFD 146
>At4g16835.1 68417.m02541 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 575
Score = 27.5 bits (58), Expect = 7.8
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = -3
Query: 144 YGSWDQVHPDRTSISDTVYFCSSR*HLAGRRPMVIFTK*HHNLESQQ 4
+ S D++HP+ SI + + LAG +P + F HN+E +Q
Sbjct: 455 FRSSDRIHPELDSIHKKLKELEKKMKLAGYKPELEFAL--HNVEEEQ 499
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,863,126
Number of Sequences: 28952
Number of extensions: 334334
Number of successful extensions: 973
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 973
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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