Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_P09
(655 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_UPI00015B411C Cluster: PREDICTED: similar to pseudourid... 155 7e-37
UniRef50_UPI0000D554D8 Cluster: PREDICTED: similar to CG4159-PA;... 151 2e-35
UniRef50_Q9VDK6 Cluster: CG4159-PA; n=4; Diptera|Rep: CG4159-PA ... 149 4e-35
UniRef50_UPI0000DB712C Cluster: PREDICTED: similar to CG4159-PA;... 144 2e-33
UniRef50_Q4T6B0 Cluster: Chromosome undetermined SCAF8839, whole... 118 9e-26
UniRef50_Q9Y606 Cluster: tRNA pseudouridine synthase A; n=29; Eu... 107 3e-22
UniRef50_A7RII9 Cluster: Predicted protein; n=3; Eumetazoa|Rep: ... 101 1e-20
UniRef50_A7NVQ8 Cluster: Chromosome chr18 scaffold_1, whole geno... 99 5e-20
UniRef50_Q54FA0 Cluster: TRNA pseudouridylate synthase; n=1; Dic... 100 6e-20
UniRef50_Q4P397 Cluster: Putative uncharacterized protein; n=1; ... 98 2e-19
UniRef50_Q6CC39 Cluster: tRNA pseudouridine synthase 1; n=1; Yar... 98 2e-19
UniRef50_Q9XXN0 Cluster: Putative uncharacterized protein pus-1;... 97 3e-19
UniRef50_A2X849 Cluster: Putative uncharacterized protein; n=4; ... 97 4e-19
UniRef50_Q9LN29 Cluster: F14O10.3 protein; n=3; Arabidopsis thal... 95 2e-18
UniRef50_Q7S319 Cluster: Putative uncharacterized protein NCU075... 91 3e-17
UniRef50_O94396 Cluster: tRNA pseudouridine synthase 1; n=1; Sch... 90 5e-17
UniRef50_Q12211 Cluster: tRNA pseudouridine synthase 1; n=7; Sac... 89 1e-16
UniRef50_Q0U5E9 Cluster: Putative uncharacterized protein; n=1; ... 87 3e-16
UniRef50_A7TTG9 Cluster: Putative uncharacterized protein; n=1; ... 87 3e-16
UniRef50_UPI00004993EF Cluster: tRNA pseudouridine synthase; n=1... 87 3e-16
UniRef50_Q3KZ66 Cluster: Pseudouridylate synthase; n=3; Schistos... 85 1e-15
UniRef50_Q2H827 Cluster: Putative uncharacterized protein; n=1; ... 85 2e-15
UniRef50_A6SDF5 Cluster: Putative uncharacterized protein; n=2; ... 84 2e-15
UniRef50_P53167 Cluster: tRNA pseudouridine synthase 2; n=2; Sac... 84 3e-15
UniRef50_Q6FJJ6 Cluster: Similar to sp|P53167 Saccharomyces cere... 80 4e-14
UniRef50_Q00ST8 Cluster: TRNA pseudouridylate synthase; n=2; Ost... 77 5e-13
UniRef50_A2QZ58 Cluster: Putative frameshift; n=1; Aspergillus n... 76 6e-13
UniRef50_A7NY39 Cluster: Chromosome chr6 scaffold_3, whole genom... 74 3e-12
UniRef50_Q5K777 Cluster: Pseudouridylate synthase, putative; n=2... 72 1e-11
UniRef50_O22928 Cluster: Putative tRNA pseudouridine synthase; n... 71 2e-11
UniRef50_Q4D3D3 Cluster: Putative uncharacterized protein; n=3; ... 69 1e-10
UniRef50_O94295 Cluster: tRNA pseudouridine synthase 2; n=1; Sch... 66 7e-10
UniRef50_O74451 Cluster: Pseudouridylate synthase; n=1; Schizosa... 65 2e-09
UniRef50_Q10LR0 Cluster: TRNA pseudouridine synthase family prot... 64 3e-09
UniRef50_A2XGH5 Cluster: Putative uncharacterized protein; n=1; ... 64 3e-09
UniRef50_Q1XD12 Cluster: TRNA pseudouridine synthase; n=1; Pneum... 64 3e-09
UniRef50_Q59S63 Cluster: tRNA pseudouridine synthase 1; n=2; Sac... 63 5e-09
UniRef50_Q8SS41 Cluster: Pseudouridylate synthase; n=1; Encephal... 60 5e-08
UniRef50_Q54TQ3 Cluster: Putative uncharacterized protein; n=1; ... 59 1e-07
UniRef50_A4RAI8 Cluster: Putative uncharacterized protein; n=1; ... 58 1e-07
UniRef50_A5ULI2 Cluster: Pseudouridylate synthase; n=1; Methanob... 58 1e-07
UniRef50_A3F4X8 Cluster: TRNA pseudouridine synthase A; n=1; Tae... 58 2e-07
UniRef50_A6RCJ6 Cluster: Putative uncharacterized protein; n=1; ... 57 4e-07
UniRef50_Q54LM5 Cluster: Putative uncharacterized protein; n=1; ... 56 7e-07
UniRef50_A2SU30 Cluster: Pseudouridylate synthase; n=1; Methanoc... 56 7e-07
UniRef50_O26928 Cluster: tRNA pseudouridine synthase A; n=1; Met... 56 7e-07
UniRef50_A4S8M4 Cluster: Predicted protein; n=2; Ostreococcus|Re... 56 1e-06
UniRef50_A2DE30 Cluster: tRNA pseudouridine synthase family prot... 56 1e-06
UniRef50_Q09524 Cluster: Probable tRNA pseudouridine synthase ta... 39 4e-06
UniRef50_Q18DQ1 Cluster: Pseudouridylate synthase; n=1; Haloquad... 54 4e-06
UniRef50_A7D6F0 Cluster: tRNA pseudouridine synthase; n=1; Halor... 53 5e-06
UniRef50_A7ASP1 Cluster: tRNA pseudouridine synthase, putative; ... 52 9e-06
UniRef50_Q22TA6 Cluster: Pseudouridylate synthase; n=1; Tetrahym... 51 2e-05
UniRef50_A2QE34 Cluster: Catalytic activity: tRNA uridine <=> tR... 51 2e-05
UniRef50_Q2NHB4 Cluster: Pseudouridylate synthase; n=1; Methanos... 51 2e-05
UniRef50_A5PKS2 Cluster: LOC100101318 protein; n=4; Xenopus|Rep:... 51 3e-05
UniRef50_Q4Q9E9 Cluster: Pseudouridylate synthase-like protein; ... 51 3e-05
UniRef50_Q4Q3H7 Cluster: Putative uncharacterized protein; n=3; ... 51 3e-05
UniRef50_Q5UXW0 Cluster: tRNA pseudouridine synthase A; n=3; Hal... 51 3e-05
UniRef50_Q8U2C1 Cluster: tRNA pseudouridine synthase A; n=4; The... 50 4e-05
UniRef50_UPI0000DB7775 Cluster: PREDICTED: similar to CG3045-PA;... 50 6e-05
UniRef50_Q8R601 Cluster: tRNA pseudouridine synthase A; n=3; Fus... 50 6e-05
UniRef50_A2E6F9 Cluster: tRNA pseudouridine synthase family prot... 49 9e-05
UniRef50_A0DFY8 Cluster: Pseudouridylate synthase; n=1; Parameci... 49 9e-05
UniRef50_Q8TU65 Cluster: tRNA pseudouridine synthase A; n=5; Arc... 49 9e-05
UniRef50_UPI00015BE519 Cluster: UPI00015BE519 related cluster; n... 49 1e-04
UniRef50_Q5NG36 Cluster: tRNA pseudouridine synthase A; n=11; Fr... 49 1e-04
UniRef50_Q9UTB3 Cluster: Pseudouridylate synthase; n=1; Schizosa... 48 2e-04
UniRef50_Q64EQ0 Cluster: Pseudouridylate synthase; n=1; uncultur... 48 2e-04
UniRef50_A7SJV8 Cluster: Predicted protein; n=1; Nematostella ve... 34 2e-04
UniRef50_A0E7K0 Cluster: Pseudouridylate synthase; n=1; Parameci... 47 3e-04
UniRef50_A2FDS7 Cluster: tRNA pseudouridine synthase family prot... 47 5e-04
UniRef50_P70830 Cluster: tRNA pseudouridine synthase A; n=3; Bor... 47 5e-04
UniRef50_Q8KDR7 Cluster: tRNA pseudouridine synthase A; n=9; Chl... 46 6e-04
UniRef50_Q0W2P8 Cluster: Pseudouridylate synthase; n=1; uncultur... 46 8e-04
UniRef50_Q8XLQ0 Cluster: tRNA pseudouridine synthase A 1; n=4; C... 46 0.001
UniRef50_A7HCM5 Cluster: tRNA-pseudouridine synthase I; n=2; Ana... 45 0.002
UniRef50_Q7QV27 Cluster: GLP_180_17283_16483; n=1; Giardia lambl... 45 0.002
UniRef50_Q250I7 Cluster: Pseudouridylate synthase; n=2; Desulfit... 44 0.002
UniRef50_A0YB03 Cluster: Pseudouridylate synthase; n=10; Gammapr... 44 0.002
UniRef50_Q6MDE3 Cluster: tRNA pseudouridine synthase A 2; n=1; C... 44 0.002
UniRef50_UPI0000E87E98 Cluster: tRNA pseudouridine synthase A; n... 44 0.004
UniRef50_Q1IRQ4 Cluster: Pseudouridylate synthase; n=2; Acidobac... 44 0.004
UniRef50_A0DJ25 Cluster: Pseudouridylate synthase; n=1; Parameci... 44 0.004
UniRef50_Q8DWH1 Cluster: tRNA pseudouridine synthase A; n=42; La... 44 0.004
UniRef50_A6DAN4 Cluster: Pseudouridylate synthase; n=1; Caminiba... 43 0.006
UniRef50_Q6F1W2 Cluster: tRNA pseudouridine synthase A; n=3; Mol... 43 0.006
UniRef50_A0LIV1 Cluster: Pseudouridylate synthase; n=1; Syntroph... 43 0.007
UniRef50_A7PC02 Cluster: Chromosome chr2 scaffold_11, whole geno... 43 0.007
UniRef50_O66953 Cluster: tRNA pseudouridine synthase A; n=1; Aqu... 43 0.007
UniRef50_UPI00015B40A8 Cluster: PREDICTED: similar to pseudourid... 42 0.010
UniRef50_A7I4S8 Cluster: tRNA pseudouridine synthase A; n=1; Can... 42 0.010
UniRef50_Q820P8 Cluster: tRNA pseudouridine synthase A; n=10; Pr... 42 0.010
UniRef50_Q6DI24 Cluster: Zgc:56653 protein; n=2; Danio rerio|Rep... 42 0.013
UniRef50_Q4UIU5 Cluster: Pseudouridylate synthase; n=2; Theileri... 42 0.013
UniRef50_Q1FEL6 Cluster: Pseudouridylate synthase; n=1; Clostrid... 42 0.017
UniRef50_Q2FT01 Cluster: Pseudouridylate synthase; n=1; Methanos... 41 0.023
UniRef50_A0B7V0 Cluster: Pseudouridylate synthase; n=1; Methanos... 41 0.023
UniRef50_Q8CWM6 Cluster: tRNA pseudouridine synthase A; n=1; Syn... 41 0.023
UniRef50_Q22RZ3 Cluster: TRNA pseudouridine synthase family prot... 41 0.030
UniRef50_Q8TWZ3 Cluster: tRNA pseudouridine synthase A; n=1; Met... 41 0.030
UniRef50_Q5L3Q7 Cluster: tRNA pseudouridine synthase A; n=11; Ba... 41 0.030
UniRef50_UPI000049A0B0 Cluster: pseudouridine synthase; n=1; Ent... 40 0.039
UniRef50_Q08Z59 Cluster: Pseudouridylate synthase; n=2; Cystobac... 40 0.039
UniRef50_A5E2I9 Cluster: Pseudouridylate synthase; n=4; Saccharo... 40 0.039
UniRef50_Q057U4 Cluster: Pseudouridylate synthase; n=1; Buchnera... 40 0.052
UniRef50_Q4D8T5 Cluster: Pseudouridylate synthase I, putative; n... 40 0.052
UniRef50_Q17C60 Cluster: Pseudouridylate synthase; n=2; Culicida... 40 0.052
UniRef50_Q9PPV4 Cluster: tRNA pseudouridine synthase A; n=1; Ure... 40 0.052
UniRef50_Q88XU9 Cluster: tRNA pseudouridine synthase A; n=10; La... 40 0.052
UniRef50_A4XKB7 Cluster: Pseudouridylate synthase; n=3; Clostrid... 40 0.069
UniRef50_Q8IAP2 Cluster: Putative uncharacterized protein PF08_0... 40 0.069
UniRef50_Q4Q7E9 Cluster: Pseudouridylate synthase; n=5; Trypanos... 40 0.069
UniRef50_O28544 Cluster: tRNA pseudouridine synthase A; n=1; Arc... 40 0.069
UniRef50_Q8GUL5 Cluster: Putative uncharacterized protein At5g35... 39 0.091
UniRef50_Q654A2 Cluster: Pseudouridylate synthase; n=3; Oryza sa... 39 0.091
UniRef50_Q7RDA0 Cluster: Putative uncharacterized protein PY0552... 39 0.091
UniRef50_A3LX03 Cluster: Pseudouridylate synthase; n=4; Saccharo... 39 0.091
UniRef50_Q57WP9 Cluster: Pseudouridylate synthase I, putative; n... 39 0.12
UniRef50_A3CXX4 Cluster: Pseudouridylate synthase; n=1; Methanoc... 39 0.12
UniRef50_Q3A9U9 Cluster: Pseudouridylate synthase; n=1; Carboxyd... 38 0.16
UniRef50_Q5CPW7 Cluster: Pus1p-like type II pseudousynthas TruA;... 38 0.16
UniRef50_UPI00015653AF Cluster: tRNA-pseudouridine synthase A; n... 38 0.21
UniRef50_Q3ZZP4 Cluster: Pseudouridylate synthase; n=3; Dehaloco... 38 0.21
UniRef50_Q21IY8 Cluster: Pseudouridylate synthase; n=2; Gammapro... 38 0.21
UniRef50_Q9C5K6 Cluster: Pseudouridylate synthase; n=3; core eud... 38 0.21
UniRef50_Q7TU07 Cluster: tRNA pseudouridine synthase A; n=1; Pir... 38 0.28
UniRef50_Q9BZE2 Cluster: tRNA pseudouridine synthase 3; n=19; Eu... 38 0.28
UniRef50_Q3Y386 Cluster: Pseudouridylate synthase; n=3; Firmicut... 37 0.37
UniRef50_A6Q408 Cluster: Pseudouridylate synthase; n=2; unclassi... 37 0.37
UniRef50_P31115 Cluster: tRNA pseudouridine synthase 3; n=5; Sac... 37 0.37
UniRef50_Q9X1R0 Cluster: tRNA pseudouridine synthase A; n=5; The... 37 0.49
UniRef50_Q7MBB9 Cluster: tRNA pseudouridine synthase A; n=1; Glo... 37 0.49
UniRef50_Q4SEJ2 Cluster: Pseudouridylate synthase; n=3; Tetraodo... 36 0.64
UniRef50_A6TWE8 Cluster: Pseudouridylate synthase; n=4; Clostrid... 36 0.64
UniRef50_A6BIC3 Cluster: Pseudouridylate synthase; n=1; Dorea lo... 36 0.64
UniRef50_A0ZG49 Cluster: Pseudouridylate synthase; n=3; Cyanobac... 36 0.64
UniRef50_Q6I3T8 Cluster: tRNA pseudouridine synthase A 2; n=12; ... 36 0.64
UniRef50_Q011R7 Cluster: Exopolyphosphatases and related protein... 36 0.85
UniRef50_Q8I0W4 Cluster: TRNA pseudouridine synthase, putative; ... 36 0.85
UniRef50_A5KCH3 Cluster: Pseudouridylate synthase 1, putative; n... 36 0.85
UniRef50_Q0UN59 Cluster: Putative uncharacterized protein; n=1; ... 36 0.85
UniRef50_Q6G7A2 Cluster: tRNA pseudouridine synthase A; n=16; St... 36 0.85
UniRef50_P60351 Cluster: tRNA pseudouridine synthase A; n=2; Can... 36 0.85
UniRef50_Q4ALX6 Cluster: Pseudouridylate synthase; n=1; Chlorobi... 36 1.1
UniRef50_A3ZQX0 Cluster: Pseudouridylate synthase; n=2; Bacteria... 36 1.1
UniRef50_Q7TU31 Cluster: tRNA pseudouridine synthase A; n=5; Pro... 36 1.1
UniRef50_Q72DL8 Cluster: tRNA pseudouridine synthase A; n=2; Des... 36 1.1
UniRef50_UPI0000E48924 Cluster: PREDICTED: similar to FKSG32, pa... 35 1.5
UniRef50_Q11XU3 Cluster: Pseudouridylate synthase; n=1; Cytophag... 35 1.5
UniRef50_Q5CV63 Cluster: Pseudouridylate synthase; n=2; Cryptosp... 35 1.5
UniRef50_A7ANH8 Cluster: tRNA pseudouridine synthase A family pr... 35 1.5
UniRef50_A7I1Z3 Cluster: tRNA pseudouridine synthase A; n=1; Cam... 35 2.0
UniRef50_A7HKV8 Cluster: tRNA pseudouridine synthase A; n=1; Fer... 35 2.0
UniRef50_A7C1F2 Cluster: tRNA pseudouridine synthase A; n=1; Beg... 35 2.0
UniRef50_Q9KTA4 Cluster: tRNA pseudouridine synthase A; n=29; Ga... 35 2.0
UniRef50_Q6I4Q2 Cluster: tRNA pseudouridine synthase A 1; n=14; ... 35 2.0
UniRef50_Q4AHD2 Cluster: TRNA pseudouridine synthase; n=1; Chlor... 34 2.6
UniRef50_Q7M9U3 Cluster: tRNA pseudouridine synthase A; n=2; Wol... 34 2.6
UniRef50_Q6MEE7 Cluster: tRNA pseudouridine synthase A 1; n=1; C... 34 2.6
UniRef50_Q30RV9 Cluster: Pseudouridylate synthase; n=1; Thiomicr... 34 3.4
UniRef50_Q7QX52 Cluster: Pseudouridylate synthase; n=1; Giardia ... 34 3.4
UniRef50_Q54I97 Cluster: Pseudouridylate synthase; n=1; Dictyost... 34 3.4
UniRef50_A0CKA3 Cluster: Chromosome undetermined scaffold_2, who... 34 3.4
UniRef50_Q7U335 Cluster: tRNA pseudouridine synthase A; n=7; Gam... 33 4.5
UniRef50_Q1NSM9 Cluster: Putative uncharacterized protein; n=1; ... 33 6.0
UniRef50_A6NVS7 Cluster: Pseudouridylate synthase; n=1; Bacteroi... 33 6.0
UniRef50_A5E087 Cluster: Protein POS5; n=2; Saccharomycetales|Re... 33 6.0
UniRef50_Q8D2P5 Cluster: tRNA pseudouridine synthase A; n=1; Wig... 33 6.0
UniRef50_Q7TTT1 Cluster: tRNA pseudouridine synthase A; n=26; Cy... 33 6.0
UniRef50_UPI000023D4AE Cluster: hypothetical protein FG10837.1; ... 33 7.9
UniRef50_Q0AUL4 Cluster: Pseudouridylate synthase; n=1; Syntroph... 33 7.9
UniRef50_A5I338 Cluster: Pseudouridylate synthase; n=7; Clostrid... 33 7.9
UniRef50_Q8ZXR6 Cluster: tRNA pseudouridine synthase A; n=4; Pyr... 33 7.9
UniRef50_O87016 Cluster: tRNA pseudouridine synthase A; n=132; P... 33 7.9
>UniRef50_UPI00015B411C Cluster: PREDICTED: similar to
pseudouridylate synthase; n=1; Nasonia vitripennis|Rep:
PREDICTED: similar to pseudouridylate synthase - Nasonia
vitripennis
Length = 437
Score = 155 bits (377), Expect = 7e-37
Identities = 75/128 (58%), Positives = 89/128 (69%)
Frame = +1
Query: 271 KPYERIKRKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQ 450
+P+ RIKRK AM+LGY G YYGMQRNPG TI IT E FE QN
Sbjct: 64 QPFIRIKRKNYAMMLGYCGKNYYGMQRNPGFNTIEEELIKAMLKADLITSEAFETIQNIN 123
Query: 451 FQRSSRTDKGVSAAEQVVSLKLPLQVNVEXINKRLPXTIKVFAVKRVTNRFNSKSKCNAR 630
FQR++RTDKGVSA QVVSLKLP + + IN+ LP I+VFA+KRVT FNSKS+C+AR
Sbjct: 124 FQRAARTDKGVSAVRQVVSLKLPEDPSKDSINETLPEDIRVFAIKRVTKGFNSKSQCDAR 183
Query: 631 SYSYTLPT 654
+YSYT+PT
Sbjct: 184 TYSYTMPT 191
>UniRef50_UPI0000D554D8 Cluster: PREDICTED: similar to CG4159-PA;
n=1; Tribolium castaneum|Rep: PREDICTED: similar to
CG4159-PA - Tribolium castaneum
Length = 588
Score = 151 bits (365), Expect = 2e-35
Identities = 73/137 (53%), Positives = 95/137 (69%)
Frame = +1
Query: 244 ETKPPGEIKKPYERIKRKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQE 423
ET+ GE+ E+IKR+K A+LLGYSG YYGMQRNP TI YI++E
Sbjct: 241 ETEVTGEL---IEKIKRRKFAVLLGYSGTNYYGMQRNPNTPTIEEEFFKALYKNNYISEE 297
Query: 424 DFENAQNAQFQRSSRTDKGVSAAEQVVSLKLPLQVNVEXINKRLPXTIKVFAVKRVTNRF 603
+F Q QFQR++RTDKGVSAA QVVSLKL +++ IN++LP I+VF ++RVT F
Sbjct: 298 NFTQVQTMQFQRAARTDKGVSAARQVVSLKLREDIDISKINEQLPEVIRVFGIRRVTKGF 357
Query: 604 NSKSKCNARSYSYTLPT 654
NSK +C++RSY+Y LPT
Sbjct: 358 NSKVQCDSRSYTYLLPT 374
>UniRef50_Q9VDK6 Cluster: CG4159-PA; n=4; Diptera|Rep: CG4159-PA -
Drosophila melanogaster (Fruit fly)
Length = 410
Score = 149 bits (362), Expect = 4e-35
Identities = 70/127 (55%), Positives = 91/127 (71%)
Frame = +1
Query: 274 PYERIKRKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQF 453
P +RIKRKK A+LL Y G YYGMQRNPG+QTI +IT++ FE Q + F
Sbjct: 63 PADRIKRKKSAILLSYCGANYYGMQRNPGMQTIEEELFKAMLKHKWITEDSFEQIQISCF 122
Query: 454 QRSSRTDKGVSAAEQVVSLKLPLQVNVEXINKRLPXTIKVFAVKRVTNRFNSKSKCNARS 633
QR++RTDKGVSAA QV S+KLP ++++E N LP I++F V+RVT FN+K +CNAR+
Sbjct: 123 QRAARTDKGVSAARQVCSVKLPEELDLEAFNADLPQQIRLFGVERVTKGFNAKDQCNART 182
Query: 634 YSYTLPT 654
Y+YTLPT
Sbjct: 183 YTYTLPT 189
>UniRef50_UPI0000DB712C Cluster: PREDICTED: similar to CG4159-PA;
n=1; Apis mellifera|Rep: PREDICTED: similar to CG4159-PA
- Apis mellifera
Length = 366
Score = 144 bits (349), Expect = 2e-33
Identities = 75/163 (46%), Positives = 98/163 (60%)
Frame = +1
Query: 166 EENKSIDIVPNKLLTRYNKRRAHRDWETKPPGEIKKPYERIKRKKMAMLLGYSGVEYYGM 345
E NK I+ V + R + P +I + IK+KK M+LGY G Y GM
Sbjct: 4 ETNKQIEDVVEETNKRQIIDESSEIVAKAPKLDIIEKKNNIKKKKFVMVLGYLGKNYSGM 63
Query: 346 QRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRTDKGVSAAEQVVSLKLPLQ 525
Q N G++TI +IT+ +FE+ + +FQR++RTDKGVSA Q+VSL+LP
Sbjct: 64 QINRGIKTIEGSLLSALLKADFITKNEFEDLKEIKFQRAARTDKGVSAVRQIVSLQLPNH 123
Query: 526 VNVEXINKRLPXTIKVFAVKRVTNRFNSKSKCNARSYSYTLPT 654
VN E INK LP IKVF +KRVT FNSK+KC+AR+Y Y LPT
Sbjct: 124 VNKEDINKHLPKDIKVFDIKRVTRNFNSKNKCDARTYRYVLPT 166
>UniRef50_Q4T6B0 Cluster: Chromosome undetermined SCAF8839, whole
genome shotgun sequence; n=1; Tetraodon
nigroviridis|Rep: Chromosome undetermined SCAF8839,
whole genome shotgun sequence - Tetraodon nigroviridis
(Green puffer)
Length = 375
Score = 118 bits (285), Expect = 9e-26
Identities = 66/128 (51%), Positives = 82/128 (64%), Gaps = 4/128 (3%)
Frame = +1
Query: 283 RIKRKKMAMLLGYSGVEYYGMQRNPG---VQTIXXXXXXXXXXXXYITQEDFENAQNAQF 453
R +KK+A+LL YSG YYGMQRNPG +TI I + E+ + F
Sbjct: 71 RYPKKKVALLLAYSGKGYYGMQRNPGSSEFRTIEDDLVAALVKSGCIPENHAEDMKKMSF 130
Query: 454 QRSSRTDKGVSAAEQVVSLKLPLQVNV-EXINKRLPXTIKVFAVKRVTNRFNSKSKCNAR 630
QR +RTDKGVSAA QVVSLKL L ++ E IN+ LP I+V VKRVT FNSK+ C+AR
Sbjct: 131 QRCARTDKGVSAAGQVVSLKLWLIDDLAEKINQHLPPQIRVLGVKRVTQGFNSKNNCDAR 190
Query: 631 SYSYTLPT 654
+Y+Y LPT
Sbjct: 191 TYAYMLPT 198
>UniRef50_Q9Y606 Cluster: tRNA pseudouridine synthase A; n=29;
Euteleostomi|Rep: tRNA pseudouridine synthase A - Homo
sapiens (Human)
Length = 427
Score = 107 bits (256), Expect = 3e-22
Identities = 58/129 (44%), Positives = 80/129 (62%), Gaps = 4/129 (3%)
Frame = +1
Query: 280 ERIKRKKMAMLLGYSGVEYYGMQRNPG---VQTIXXXXXXXXXXXXYITQEDFENAQNAQ 450
E+ ++K+ +L+ YSG Y+GMQRN G +TI I + E+ +
Sbjct: 79 EKPPKRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMS 138
Query: 451 FQRSSRTDKGVSAAEQVVSLKLPLQVNV-EXINKRLPXTIKVFAVKRVTNRFNSKSKCNA 627
FQR +RTDKGVSAA QVVSLK+ L ++ E IN LP I++ +KRVT FNSK++C+A
Sbjct: 139 FQRCARTDKGVSAAGQVVSLKVWLIDDILEKINSHLPSHIRILGLKRVTGGFNSKNRCDA 198
Query: 628 RSYSYTLPT 654
R+Y Y LPT
Sbjct: 199 RTYCYLLPT 207
>UniRef50_A7RII9 Cluster: Predicted protein; n=3; Eumetazoa|Rep:
Predicted protein - Nematostella vectensis
Length = 300
Score = 101 bits (243), Expect = 1e-20
Identities = 55/122 (45%), Positives = 70/122 (57%), Gaps = 1/122 (0%)
Frame = +1
Query: 292 RKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRT 471
+KK A+L+ Y GV Y GMQ NPGV+TI IT + E FQR +RT
Sbjct: 1 KKKCALLISYCGVGYAGMQINPGVRTIEEQLINALHQAEVITDDAKECLGKMSFQRCART 60
Query: 472 DKGVSAAEQVVSLKL-PLQVNVEXINKRLPXTIKVFAVKRVTNRFNSKSKCNARSYSYTL 648
DKGVSAA QVVSLK+ L + IN LP I++F + + T F+ K C+AR+Y Y
Sbjct: 61 DKGVSAARQVVSLKISALSSLLPKINSFLPPEIRIFGMIKTTKAFDCKQNCSARTYEYLT 120
Query: 649 PT 654
PT
Sbjct: 121 PT 122
>UniRef50_A7NVQ8 Cluster: Chromosome chr18 scaffold_1, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr18 scaffold_1, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 378
Score = 99 bits (238), Expect = 5e-20
Identities = 54/130 (41%), Positives = 74/130 (56%), Gaps = 2/130 (1%)
Frame = +1
Query: 268 KKPYERIKRKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNA 447
KKP R KR+K+A+ Y GV Y GMQ+NPG +TI + ++D + +
Sbjct: 32 KKP--RYKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFFSGAVPEQDRGHPKRF 89
Query: 448 QFQRSSRTDKGVSAAEQVVSLKLPLQVN--VEXINKRLPXTIKVFAVKRVTNRFNSKSKC 621
+ RS+RTDKGVSA QVVS + + VE +N LP I++F KRVT FN+K C
Sbjct: 90 DWARSARTDKGVSAVGQVVSGRFYIDPPGLVERLNSNLPPQIRIFGFKRVTASFNAKKFC 149
Query: 622 NARSYSYTLP 651
+ R Y Y +P
Sbjct: 150 DRRRYVYLIP 159
>UniRef50_Q54FA0 Cluster: TRNA pseudouridylate synthase; n=1;
Dictyostelium discoideum AX4|Rep: TRNA pseudouridylate
synthase - Dictyostelium discoideum AX4
Length = 596
Score = 99.5 bits (237), Expect = 6e-20
Identities = 63/187 (33%), Positives = 95/187 (50%), Gaps = 16/187 (8%)
Frame = +1
Query: 142 EAADVTKDEENKSIDIVPNKLLTRYNKRRAHRDWETKPP-----------GEIKKPYERI 288
EA + D+ K + T NKR+ ++ +PP + K +
Sbjct: 78 EADEDELDKFEKESESTSTTTTTTENKRKPNQPPPVRPPKLSKEELIELQNKTKITTDES 137
Query: 289 KRKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSR 468
++KK+A++LGYSG Y GMQ+NPG++T+ I+ ++ Q + R +R
Sbjct: 138 RKKKVAIILGYSGTNYAGMQKNPGLKTVEEELEHALFRTGGISPDNMYYQQKVDWIRCAR 197
Query: 469 TDKGVSAAEQVVSLKLPL-QVNVE----XINKRLPXTIKVFAVKRVTNRFNSKSKCNARS 633
TDKGVSA VVSLK+ + + E +NK LP I VF + RV N F++K+ +ARS
Sbjct: 198 TDKGVSAIRNVVSLKMEMGPPDFEGMKIALNKELPKDITVFHIMRVNNSFHAKNAVDARS 257
Query: 634 YSYTLPT 654
Y Y PT
Sbjct: 258 YIYVTPT 264
>UniRef50_Q4P397 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 615
Score = 97.9 bits (233), Expect = 2e-19
Identities = 54/158 (34%), Positives = 86/158 (54%), Gaps = 10/158 (6%)
Frame = +1
Query: 211 RYNKRRAHRDWETKPPG--EIKKPYERIKRKKMAMLLGYSGVEYYGMQRNPGVQTIXXXX 384
R ++R R + + P E +R+ ++K+A+ GY G+ Y G+Q NPGV+TI
Sbjct: 91 RRDRRGTGRAQDNESPSTCEASASTDRLPKRKVAVKFGYCGIGYSGLQINPGVKTIEGDI 150
Query: 385 XXXXXXXXYITQEDFENAQNAQFQRSSRTDKGVSAAEQVVSLKLPLQVN--------VEX 540
++ ++ N QR++RTD+GV AA ++SLKL LQ V+
Sbjct: 151 FDAFCTAGAVSSDNAVNPNKVGLQRAARTDRGVHAAGNLLSLKLILQPQGLKPGETLVDK 210
Query: 541 INKRLPXTIKVFAVKRVTNRFNSKSKCNARSYSYTLPT 654
+N+ LP I+++ V RV N FN++ C++R Y Y LPT
Sbjct: 211 VNELLPPFIRIWGVTRVQNGFNARQSCDSRMYEYLLPT 248
>UniRef50_Q6CC39 Cluster: tRNA pseudouridine synthase 1; n=1;
Yarrowia lipolytica|Rep: tRNA pseudouridine synthase 1 -
Yarrowia lipolytica (Candida lipolytica)
Length = 528
Score = 97.9 bits (233), Expect = 2e-19
Identities = 51/147 (34%), Positives = 79/147 (53%), Gaps = 2/147 (1%)
Frame = +1
Query: 220 KRRAHRDWETKPPGEIKKPYERIKRKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXX 399
K+ RD K G + R ++K+A ++GY G Y+GMQ NP +TI
Sbjct: 60 KQGEGRDTRRKTDGPLVADEVRQPKRKVACMIGYCGTGYHGMQLNPPQKTIEGDIFQAFV 119
Query: 400 XXXYITQEDFENAQNAQFQRSSRTDKGVSAAEQVVSLKLPLQVN--VEXINKRLPXTIKV 573
I+Q + ++ + + F R++RTDKGV AA V+SLK+ ++ VE IN LP ++V
Sbjct: 120 KAGAISQNNADDPKKSAFMRAARTDKGVHAAGNVISLKMIIEDENIVEKINSHLPEQLRV 179
Query: 574 FAVKRVTNRFNSKSKCNARSYSYTLPT 654
+ V R F + C++R Y Y +PT
Sbjct: 180 WGVSRTNKAFECRKLCSSRVYEYLMPT 206
>UniRef50_Q9XXN0 Cluster: Putative uncharacterized protein pus-1;
n=2; Caenorhabditis|Rep: Putative uncharacterized
protein pus-1 - Caenorhabditis elegans
Length = 415
Score = 97.1 bits (231), Expect = 3e-19
Identities = 55/137 (40%), Positives = 78/137 (56%), Gaps = 6/137 (4%)
Frame = +1
Query: 262 EIKKPYERIKRKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQ 441
E KKP R+K+ K AMLLGY G +YYGMQ + TI +IT E
Sbjct: 24 EPKKP--RVKQAKYAMLLGYQGKKYYGMQLQKDLPTIESKLLEAMETAGWITTAQKEKPF 81
Query: 442 NAQFQRSSRTDKGVSAAEQVVSLKLP---LQVNVE---XINKRLPXTIKVFAVKRVTNRF 603
+ FQR++RTD+ VSAA Q+ ++LP + E +N LP I+VF ++R TN F
Sbjct: 82 DFFFQRAARTDRAVSAARQMCGMQLPRDDAKYQAEGAGILNNILPADIRVFGMRRTTNFF 141
Query: 604 NSKSKCNARSYSYTLPT 654
+ + +C+ R+YSYT P+
Sbjct: 142 HPQKQCDHRTYSYTCPS 158
>UniRef50_A2X849 Cluster: Putative uncharacterized protein; n=4;
Magnoliophyta|Rep: Putative uncharacterized protein -
Oryza sativa subsp. indica (Rice)
Length = 588
Score = 96.7 bits (230), Expect = 4e-19
Identities = 52/125 (41%), Positives = 71/125 (56%), Gaps = 2/125 (1%)
Frame = +1
Query: 283 RIKRKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRS 462
R KR+K+A+LLGY G Y GMQ+NPG +TI + + D + + R+
Sbjct: 45 RYKRRKVAILLGYCGAGYQGMQKNPGARTIEGDLEEALYRAGAVPEADRAAPRRYDWARA 104
Query: 463 SRTDKGVSAAEQVVSLKLPLQ--VNVEXINKRLPXTIKVFAVKRVTNRFNSKSKCNARSY 636
+RTDKGVSAA QVVS + + V + +N +L I+ F RVTN FN+K C+ R Y
Sbjct: 105 ARTDKGVSAAAQVVSGRFYVDPPVFTDRLNAQLAPQIRAFGYVRVTNSFNAKKFCDRRRY 164
Query: 637 SYTLP 651
Y LP
Sbjct: 165 VYLLP 169
>UniRef50_Q9LN29 Cluster: F14O10.3 protein; n=3; Arabidopsis
thaliana|Rep: F14O10.3 protein - Arabidopsis thaliana
(Mouse-ear cress)
Length = 549
Score = 94.7 bits (225), Expect = 2e-18
Identities = 49/125 (39%), Positives = 71/125 (56%), Gaps = 2/125 (1%)
Frame = +1
Query: 283 RIKRKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRS 462
+ +R+K+A++ + GV Y GMQ+NPG +TI + D +N ++ RS
Sbjct: 54 KYRRRKVAIVFAFCGVGYQGMQKNPGAKTIEGELEEALFHAGAVPDADRNKPRNYEWARS 113
Query: 463 SRTDKGVSAAEQVVSLKLPLQVN--VEXINKRLPXTIKVFAVKRVTNRFNSKSKCNARSY 636
+RTDKGVSA QVVS + + VE +N +LP I+VF KRV F+SK C+ R Y
Sbjct: 114 ARTDKGVSAVGQVVSGRFYVDPPGFVERLNSKLPDQIRVFGYKRVAPSFSSKKFCDRRRY 173
Query: 637 SYTLP 651
Y +P
Sbjct: 174 VYLIP 178
>UniRef50_Q7S319 Cluster: Putative uncharacterized protein
NCU07528.1; n=2; Sordariomycetes|Rep: Putative
uncharacterized protein NCU07528.1 - Neurospora crassa
Length = 625
Score = 90.6 bits (215), Expect = 3e-17
Identities = 47/127 (37%), Positives = 76/127 (59%), Gaps = 2/127 (1%)
Frame = +1
Query: 280 ERIKRKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQR 459
ER ++K+A+L+GY+G Y+G+Q N +TI I++ + ++ + + R
Sbjct: 116 ERRPKRKVAVLIGYAGTGYHGIQINHKEKTIEGDLFAAFVKAGAISKANADDPKKSSLVR 175
Query: 460 SSRTDKGVSAAEQVVSLKLPLQVN--VEXINKRLPXTIKVFAVKRVTNRFNSKSKCNARS 633
+RTDKGV AA V+SLKL ++ V+ IN LP IKV+ ++RVTN F+ C++R
Sbjct: 176 CARTDKGVHAAANVLSLKLIVEDEDIVDKINSHLPDQIKVWGIQRVTNGFSCYQACDSRW 235
Query: 634 YSYTLPT 654
Y Y +P+
Sbjct: 236 YEYLMPS 242
>UniRef50_O94396 Cluster: tRNA pseudouridine synthase 1; n=1;
Schizosaccharomyces pombe|Rep: tRNA pseudouridine
synthase 1 - Schizosaccharomyces pombe (Fission yeast)
Length = 534
Score = 89.8 bits (213), Expect = 5e-17
Identities = 45/127 (35%), Positives = 74/127 (58%), Gaps = 2/127 (1%)
Frame = +1
Query: 280 ERIKRKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQR 459
E+ ++K+A L+GY G Y+GMQ NP +TI ++ + ++ + R
Sbjct: 39 EKKPKRKVACLVGYCGSGYHGMQLNPPSKTIEGDLFDAFVKAGAVSSYNADDPKKVALAR 98
Query: 460 SSRTDKGVSAAEQVVSLKLPLQVN--VEXINKRLPXTIKVFAVKRVTNRFNSKSKCNARS 633
++RTDKGV AA V+SLKL ++ +E +N+ LP +I+++ V R N FN ++ C +R
Sbjct: 99 AARTDKGVHAAGNVISLKLIMEDEKLIEKVNEHLPPSIRLWDVIRTINSFNPRTYCESRI 158
Query: 634 YSYTLPT 654
Y Y +PT
Sbjct: 159 YEYMVPT 165
>UniRef50_Q12211 Cluster: tRNA pseudouridine synthase 1; n=7;
Saccharomycetales|Rep: tRNA pseudouridine synthase 1 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 544
Score = 88.6 bits (210), Expect = 1e-16
Identities = 43/126 (34%), Positives = 75/126 (59%), Gaps = 2/126 (1%)
Frame = +1
Query: 283 RIKRKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRS 462
R+ ++K+A+++GY G Y+GMQ NP TI I++++ + + F R+
Sbjct: 71 RLPKRKVAVMVGYCGTGYHGMQYNPPNPTIESALFKAFVEAGAISKDNSNDLKKNGFMRA 130
Query: 463 SRTDKGVSAAEQVVSLKLPLQVN--VEXINKRLPXTIKVFAVKRVTNRFNSKSKCNARSY 636
+RTDKGV A ++SLK+ ++ + IN++LP I+V+ ++RV F+ + C++R Y
Sbjct: 131 ARTDKGVHAGGNLISLKMIIEDPDIKQKINEKLPEGIRVWDIERVNKAFDCRKMCSSRWY 190
Query: 637 SYTLPT 654
Y LPT
Sbjct: 191 EYLLPT 196
>UniRef50_Q0U5E9 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 621
Score = 87.4 bits (207), Expect = 3e-16
Identities = 47/135 (34%), Positives = 75/135 (55%), Gaps = 2/135 (1%)
Frame = +1
Query: 256 PGEIKKPYERIKRKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFEN 435
P E + ER ++K+A+++GYSG Y GMQ + +TI I++ + ++
Sbjct: 92 PAEEVEAEERRPKRKVAVMIGYSGTGYKGMQIDNKQKTIEGDLFTAFVAAGAISKANADD 151
Query: 436 AQNAQFQRSSRTDKGVSAAEQVVSLKLPLQVN--VEXINKRLPXTIKVFAVKRVTNRFNS 609
+ + R +RTDKGV AA V+SLKL ++ VE IN L I+V+ ++R T F+
Sbjct: 152 PKKSSLVRCARTDKGVHAAGNVISLKLIIEEEDIVEKINSHLSEQIRVWGIQRTTGSFSC 211
Query: 610 KSKCNARSYSYTLPT 654
C++R Y Y +PT
Sbjct: 212 YQACDSRWYEYLIPT 226
>UniRef50_A7TTG9 Cluster: Putative uncharacterized protein; n=1;
Vanderwaltozyma polyspora DSM 70294|Rep: Putative
uncharacterized protein - Vanderwaltozyma polyspora DSM
70294
Length = 562
Score = 87.4 bits (207), Expect = 3e-16
Identities = 44/127 (34%), Positives = 73/127 (57%), Gaps = 2/127 (1%)
Frame = +1
Query: 280 ERIKRKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQR 459
+R+ ++K+A+++GY G Y+GMQ NP TI I++ + + + F R
Sbjct: 72 KRLPKRKVAVMVGYCGTGYHGMQYNPPNPTIEDALFKAFVQAGAISKANSNDLKKNGFMR 131
Query: 460 SSRTDKGVSAAEQVVSLKLPLQ--VNVEXINKRLPXTIKVFAVKRVTNRFNSKSKCNARS 633
++RTDKGV A ++SLK+ ++ + IN+ LP IKV+ ++RV F+ + C +R
Sbjct: 132 AARTDKGVHAGGNLISLKMIIEDPEIKQKINEELPNGIKVWNIERVNKAFDCRKMCGSRW 191
Query: 634 YSYTLPT 654
Y Y LPT
Sbjct: 192 YEYLLPT 198
>UniRef50_UPI00004993EF Cluster: tRNA pseudouridine synthase; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: tRNA pseudouridine
synthase - Entamoeba histolytica HM-1:IMSS
Length = 401
Score = 87.0 bits (206), Expect = 3e-16
Identities = 50/136 (36%), Positives = 80/136 (58%), Gaps = 2/136 (1%)
Frame = +1
Query: 253 PPGEIKKPYERIKRKKMAMLLGYSGVEYYG-MQRNPGVQTIXXXXXXXXXXXXYITQEDF 429
P E KK ERIK+ K+A++ Y G Y+G M N +TI I++++
Sbjct: 29 PKEEEKK--ERIKKFKVAVIFSYVGRGYFGLMYLNNNPKTIEGEIENAMYKAKCISEDNK 86
Query: 430 ENAQNAQFQRSSRTDKGVSAAEQVVSLKLPLQVN-VEXINKRLPXTIKVFAVKRVTNRFN 606
+ + + R +RTDKGVSAA ++SLK+ L N +E IN LP TI++ V +V++ FN
Sbjct: 87 HDLKKVGWSRCARTDKGVSAANNLISLKMGLDGNYIERINSFLPETIRIQDVVKVSHSFN 146
Query: 607 SKSKCNARSYSYTLPT 654
+K++ ++R+Y Y P+
Sbjct: 147 AKTRVDSRTYEYIFPS 162
>UniRef50_Q3KZ66 Cluster: Pseudouridylate synthase; n=3; Schistosoma
japonicum|Rep: Pseudouridylate synthase - Schistosoma
japonicum (Blood fluke)
Length = 334
Score = 85.4 bits (202), Expect = 1e-15
Identities = 49/123 (39%), Positives = 64/123 (52%), Gaps = 1/123 (0%)
Frame = +1
Query: 289 KRKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSR 468
KR+ A+L+ YSG YYGMQR P TI + E + FQR+S+
Sbjct: 45 KRRNNAILMMYSGWGYYGMQRGPIYPTIEGELSKALFTCGQLVNVTSEEHKKVNFQRASK 104
Query: 469 TDKGVSAAEQVVSLKLPLQVN-VEXINKRLPXTIKVFAVKRVTNRFNSKSKCNARSYSYT 645
TDK VSA QV SLKL + + +N LP I++ + RVT F+S + C R Y Y
Sbjct: 105 TDKYVSALGQVCSLKLYDDADLLNKLNTALPQDIRILDIIRVTRSFSSYNSCTHRVYDYL 164
Query: 646 LPT 654
LPT
Sbjct: 165 LPT 167
>UniRef50_Q2H827 Cluster: Putative uncharacterized protein; n=1;
Chaetomium globosum|Rep: Putative uncharacterized
protein - Chaetomium globosum (Soil fungus)
Length = 584
Score = 84.6 bits (200), Expect = 2e-15
Identities = 43/127 (33%), Positives = 74/127 (58%), Gaps = 2/127 (1%)
Frame = +1
Query: 280 ERIKRKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQR 459
ER ++K+A+L+GY+G Y+G+Q N +TI I++ + ++ + + R
Sbjct: 103 ERRPKRKVAVLIGYAGTGYHGIQINHKEKTIEGDLFSAFVAAGAISKANADDPKKSSLVR 162
Query: 460 SSRTDKGVSAAEQVVSLKLPLQVN--VEXINKRLPXTIKVFAVKRVTNRFNSKSKCNARS 633
+RTDKGV AA V+SLKL ++ V IN+ LP I+++ + R +N F++ C +R
Sbjct: 163 CARTDKGVHAAGNVLSLKLIVEDEDIVTKINEHLPEQIRIWGIHRTSNGFSAYQACESRW 222
Query: 634 YSYTLPT 654
Y Y +P+
Sbjct: 223 YEYLMPS 229
>UniRef50_A6SDF5 Cluster: Putative uncharacterized protein; n=2;
Sclerotiniaceae|Rep: Putative uncharacterized protein -
Botryotinia fuckeliana B05.10
Length = 631
Score = 84.2 bits (199), Expect = 2e-15
Identities = 47/133 (35%), Positives = 74/133 (55%), Gaps = 2/133 (1%)
Frame = +1
Query: 262 EIKKPYERIKRKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQ 441
E++KP + K+A+++GY+G Y G+Q N +TI I++ + + +
Sbjct: 92 EVRKP-----KHKVAVMIGYAGTGYKGLQINTKEKTIEGDMFKAFVAAGAISKANANDPK 146
Query: 442 NAQFQRSSRTDKGVSAAEQVVSLKLPLQ--VNVEXINKRLPXTIKVFAVKRVTNRFNSKS 615
+ R +RTDKGV AA V+SLKL ++ VE IN LP I+V+ ++R T FN
Sbjct: 147 KSALIRCARTDKGVHAAGNVLSLKLIIEDPKVVENINSHLPDQIRVWGIERTTGSFNCYQ 206
Query: 616 KCNARSYSYTLPT 654
C++R Y Y +PT
Sbjct: 207 MCDSRWYEYLIPT 219
>UniRef50_P53167 Cluster: tRNA pseudouridine synthase 2; n=2;
Saccharomyces cerevisiae|Rep: tRNA pseudouridine
synthase 2 - Saccharomyces cerevisiae (Baker's yeast)
Length = 370
Score = 83.8 bits (198), Expect = 3e-15
Identities = 44/116 (37%), Positives = 67/116 (57%), Gaps = 1/116 (0%)
Frame = +1
Query: 307 MLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRTDKGVS 486
MLLGY G YYGMQ NP +TI I++E+ + F ++RTDKGV
Sbjct: 1 MLLGYCGSGYYGMQYNPPHKTIEGEILTKLFDVGAISEENSLAPKKNSFMAAARTDKGVH 60
Query: 487 AAEQVVSLKLPLQVN-VEXINKRLPXTIKVFAVKRVTNRFNSKSKCNARSYSYTLP 651
A ++SLK+ L+ + V +N LP I+V+ ++ V +FN++S C++R Y Y +P
Sbjct: 61 AMLNLLSLKITLREDTVAKLNAALPPEIRVWGIQPVNKKFNARSACDSRWYQYLIP 116
>UniRef50_Q6FJJ6 Cluster: Similar to sp|P53167 Saccharomyces
cerevisiae YGL063w PUS2 pseudouridine synthase 2; n=1;
Candida glabrata|Rep: Similar to sp|P53167 Saccharomyces
cerevisiae YGL063w PUS2 pseudouridine synthase 2 -
Candida glabrata (Yeast) (Torulopsis glabrata)
Length = 317
Score = 80.2 bits (189), Expect = 4e-14
Identities = 44/123 (35%), Positives = 66/123 (53%), Gaps = 5/123 (4%)
Frame = +1
Query: 301 MAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRTDKG 480
MA++LGY G Y G+Q NP TI I+Q + ++ + F R++RTDKG
Sbjct: 1 MALVLGYLGTGYQGIQYNPPAHTIDNELFKALVATNCISQSNSDDFSKSSFSRATRTDKG 60
Query: 481 VSAAEQVVSLKL-----PLQVNVEXINKRLPXTIKVFAVKRVTNRFNSKSKCNARSYSYT 645
V A +V+LK+ P QV E +N+ LP I+++ V V +FN++ R Y Y
Sbjct: 61 VHALTNLVALKMQRYEVPQQVKAE-LNEILPDDIRIWDVVPVKKKFNARVMAGTRHYRYV 119
Query: 646 LPT 654
+PT
Sbjct: 120 IPT 122
>UniRef50_Q00ST8 Cluster: TRNA pseudouridylate synthase; n=2;
Ostreococcus|Rep: TRNA pseudouridylate synthase -
Ostreococcus tauri
Length = 450
Score = 76.6 bits (180), Expect = 5e-13
Identities = 40/107 (37%), Positives = 61/107 (57%), Gaps = 2/107 (1%)
Frame = +1
Query: 289 KRKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSR 468
K++K A+ Y G Y GMQRNPGV+TI I+ + + Q+ R++R
Sbjct: 40 KKRKCALTFAYVGAGYAGMQRNPGVRTIEGELEGAIARAGGISDANAGDFAKVQWTRAAR 99
Query: 469 TDKGVSAAEQVVSLKLPLQVN--VEXINKRLPXTIKVFAVKRVTNRF 603
TDKGVSA QV++LK+ ++ + + IN+ LP +VF + RVT +
Sbjct: 100 TDKGVSAVGQVIALKMVMEPDGMLARINEALPERFEVFGIDRVTGGY 146
>UniRef50_A2QZ58 Cluster: Putative frameshift; n=1; Aspergillus
niger|Rep: Putative frameshift - Aspergillus niger
Length = 567
Score = 76.2 bits (179), Expect = 6e-13
Identities = 42/125 (33%), Positives = 70/125 (56%), Gaps = 2/125 (1%)
Frame = +1
Query: 280 ERIKRKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQR 459
+R +KK+A+LLGYSG Y GMQ + +TI I++ + + + + R
Sbjct: 114 QRRPKKKVAVLLGYSGTGYKGMQLSETEKTIEGELFAAFVAAGAISKANATDPKKSSLVR 173
Query: 460 SSRTDKGVSAAEQVVSLKLPLQVN--VEXINKRLPXTIKVFAVKRVTNRFNSKSKCNARS 633
+RTDKGV AA +VSLKL ++ + ++ IN++L I+V+ + F+S C++R
Sbjct: 174 CARTDKGVHAAGNIVSLKLIVEDDDIIQKINEKLSSQIRVWDILVTNKSFSSYQLCDSRI 233
Query: 634 YSYTL 648
Y Y +
Sbjct: 234 YEYLI 238
>UniRef50_A7NY39 Cluster: Chromosome chr6 scaffold_3, whole genome
shotgun sequence; n=2; Vitis vinifera|Rep: Chromosome
chr6 scaffold_3, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 504
Score = 74.1 bits (174), Expect = 3e-12
Identities = 47/150 (31%), Positives = 73/150 (48%), Gaps = 14/150 (9%)
Frame = +1
Query: 244 ETKPPGEIKKPYERIKRKKMAMLLGYSGVEYYG--MQRNPG-VQTIXXXXXXXXXXXXYI 414
E+ P ++K +E ++KK+ M +GY G Y G MQR+ + TI I
Sbjct: 47 ESNPDQSVQK-WESFRKKKVVMRVGYVGTNYRGLQMQRDESSLSTIEGELETAVFKAGGI 105
Query: 415 TQEDFENAQNAQFQRSSRTDKGVSAAEQVVSLKLPLQVNV-----------EXINKRLPX 561
++ N + RSSRTDKGV + ++SLK+ + N +N LP
Sbjct: 106 RDSNYGNLHKIGWDRSSRTDKGVHSLATMISLKMEIPANAWKEDPNGIALANYVNFHLPN 165
Query: 562 TIKVFAVKRVTNRFNSKSKCNARSYSYTLP 651
IKVF++ F+++ +C+ R YSY LP
Sbjct: 166 NIKVFSILPSQRSFDARRECDLRRYSYLLP 195
>UniRef50_Q5K777 Cluster: Pseudouridylate synthase, putative; n=2;
Filobasidiella neoformans|Rep: Pseudouridylate synthase,
putative - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 560
Score = 71.7 bits (168), Expect = 1e-11
Identities = 46/152 (30%), Positives = 77/152 (50%), Gaps = 9/152 (5%)
Frame = +1
Query: 226 RAHRDWETKPPGEIKKPYERIKRKKMAMLLGYSGVEYYGMQ-RNPGVQTIXXXXXXXXXX 402
RA R WE P E +R+ +++ A+L+GY G Y GMQ ++ +TI
Sbjct: 103 RAQRAWE---PSEKTNGEKRLPKRRCAVLIGYCGTGYQGMQIQDHTDRTIEGEVFAALVK 159
Query: 403 XXYITQEDFENAQNAQFQRSSRTDKGVSAAEQVVSLKL----PLQVN----VEXINKRLP 558
++ ++ +A+ R++RTD GV AA V+S+K+ PL E +N LP
Sbjct: 160 AGAVSADNAIDARKVDIARAARTDAGVHAAGNVISIKMITEPPLPEGFKDVAEYVNTFLP 219
Query: 559 XTIKVFAVKRVTNRFNSKSKCNARSYSYTLPT 654
I+++ R FN+++ ++R Y Y LP+
Sbjct: 220 DQIRMWGWVRTVKSFNARTAADSRIYEYLLPS 251
>UniRef50_O22928 Cluster: Putative tRNA pseudouridine synthase; n=1;
Arabidopsis thaliana|Rep: Putative tRNA pseudouridine
synthase - Arabidopsis thaliana (Mouse-ear cress)
Length = 510
Score = 70.9 bits (166), Expect = 2e-11
Identities = 43/139 (30%), Positives = 69/139 (49%), Gaps = 14/139 (10%)
Frame = +1
Query: 277 YERIKRKKMAMLLGYSGVEYYGMQ---RNPGVQTIXXXXXXXXXXXXYITQEDFENAQNA 447
+E ++KK+ + +GY G +Y G+Q +P ++TI I ++ +
Sbjct: 57 WESYRKKKVVIRIGYVGTDYRGLQIQRDDPSIKTIEGELEVAIYKAGGIRDSNYGDLHKI 116
Query: 448 QFQRSSRTDKGVSAAEQVVSLKLPLQ-----------VNVEXINKRLPXTIKVFAVKRVT 594
+ RSSRTDKGV + +SLK+ + V + I+K LP I+VF+V
Sbjct: 117 GWARSSRTDKGVHSLATSISLKMEIPETAWKDDPQGTVLAKCISKHLPENIRVFSVLPSN 176
Query: 595 NRFNSKSKCNARSYSYTLP 651
RF+ + +C R YSY LP
Sbjct: 177 RRFDPRRECTLRKYSYLLP 195
>UniRef50_Q4D3D3 Cluster: Putative uncharacterized protein; n=3;
Trypanosoma|Rep: Putative uncharacterized protein -
Trypanosoma cruzi
Length = 634
Score = 68.9 bits (161), Expect = 1e-10
Identities = 46/141 (32%), Positives = 69/141 (48%), Gaps = 17/141 (12%)
Frame = +1
Query: 283 RIKRKKMAMLLGYSGVEYYGMQRN--PGVQTIXXXXXXXXXXXXYITQEDFENA---QNA 447
++ ++K+A++ GY G Y G+Q N PG T+ I++E++E Q
Sbjct: 96 KLPKRKVAIIFGYVGERYCGLQWNHLPGYPTVEEELLRALHRTGMISKENYEQEKVQQKL 155
Query: 448 QFQRSSRTDKGVSAAEQVVSLKLPL------------QVNVEXINKRLPXTIKVFAVKRV 591
++R+SRTDKGV A V+SL + L Q + LP I V+ + V
Sbjct: 156 NWERASRTDKGVHALRNVISLNVMLPYAKGSTTEYDPQEARRILMTVLPHDIIVYEIVPV 215
Query: 592 TNRFNSKSKCNARSYSYTLPT 654
T FN+ C AR+Y Y LPT
Sbjct: 216 TRSFNAYMLCGARTYEYYLPT 236
>UniRef50_O94295 Cluster: tRNA pseudouridine synthase 2; n=1;
Schizosaccharomyces pombe|Rep: tRNA pseudouridine
synthase 2 - Schizosaccharomyces pombe (Fission yeast)
Length = 451
Score = 66.1 bits (154), Expect = 7e-10
Identities = 38/125 (30%), Positives = 67/125 (53%), Gaps = 6/125 (4%)
Frame = +1
Query: 298 KMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRTDK 477
++ +LLGYSG Y+G+Q N ++TI Y+ + + A++ R++RTDK
Sbjct: 40 RIIILLGYSGYGYHGIQINNPLKTIEGDVVAVLKKLGYLKTNNID-AEHLCIARAARTDK 98
Query: 478 GVSAAEQVVSLKL----PLQVNV--EXINKRLPXTIKVFAVKRVTNRFNSKSKCNARSYS 639
GV ++SL L PL +++ +N+ L I+V++V FN + C +R+Y
Sbjct: 99 GVHTLRNLISLNLFVDKPLDISLLKTELNEALCSQIRVWSVFPAPKYFNPRISCESRTYE 158
Query: 640 YTLPT 654
Y +P+
Sbjct: 159 YLIPS 163
>UniRef50_O74451 Cluster: Pseudouridylate synthase; n=1;
Schizosaccharomyces pombe|Rep: Pseudouridylate synthase
- Schizosaccharomyces pombe (Fission yeast)
Length = 413
Score = 64.9 bits (151), Expect = 2e-09
Identities = 39/125 (31%), Positives = 63/125 (50%), Gaps = 5/125 (4%)
Frame = +1
Query: 292 RKKMAM-LLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSR 468
RK+M ++ Y G + G+Q N V+TI + Q + ++ + + ++R
Sbjct: 35 RKRMVYCVVSYRGTGFAGLQYNANVKTIQDTLFQAFARVGAVVQVNADSPKKIRMCSAAR 94
Query: 469 TDKGVSAAEQVVSLKL----PLQVNVEXINKRLPXTIKVFAVKRVTNRFNSKSKCNARSY 636
TDKGV A V+ LK+ PL V +N LP I+V+ + R N F+ + C++R Y
Sbjct: 95 TDKGVHAIVNVLGLKVLDNQPLPHVVNLVNDILPPCIRVWKMARTFNSFSPHTVCDSRVY 154
Query: 637 SYTLP 651
Y LP
Sbjct: 155 EYWLP 159
>UniRef50_Q10LR0 Cluster: TRNA pseudouridine synthase family
protein, expressed; n=7; Oryza sativa|Rep: TRNA
pseudouridine synthase family protein, expressed - Oryza
sativa subsp. japonica (Rice)
Length = 516
Score = 64.1 bits (149), Expect = 3e-09
Identities = 39/139 (28%), Positives = 65/139 (46%), Gaps = 14/139 (10%)
Frame = +1
Query: 277 YERIKRKKMAMLLGYSGVEYYGMQRNPGVQ---TIXXXXXXXXXXXXYITQEDFENAQNA 447
+E ++K++ + +GY G EY G+Q+ + TI I + ++ Q
Sbjct: 66 WESARKKRVVLRVGYVGTEYRGLQKQRELSADSTIESVLETAIFKAGGILESNYGKLQKV 125
Query: 448 QFQRSSRTDKGVSAAEQVVSLKLPLQVNV-----------EXINKRLPXTIKVFAVKRVT 594
++RSSRTDKGV + ++SLK+ + IN LP ++VF+V
Sbjct: 126 GWERSSRTDKGVHSLATMISLKMEIPDRAWENDPDGIALSNFINSNLPDNVRVFSVLPAQ 185
Query: 595 NRFNSKSKCNARSYSYTLP 651
F+ + +C R Y Y LP
Sbjct: 186 RSFDVRRECLYREYLYLLP 204
>UniRef50_A2XGH5 Cluster: Putative uncharacterized protein; n=1;
Oryza sativa (indica cultivar-group)|Rep: Putative
uncharacterized protein - Oryza sativa subsp. indica
(Rice)
Length = 264
Score = 64.1 bits (149), Expect = 3e-09
Identities = 39/139 (28%), Positives = 65/139 (46%), Gaps = 14/139 (10%)
Frame = +1
Query: 277 YERIKRKKMAMLLGYSGVEYYGMQRNPGVQ---TIXXXXXXXXXXXXYITQEDFENAQNA 447
+E ++K++ + +GY G EY G+Q+ + TI I + ++ Q
Sbjct: 66 WESARKKRVVLRVGYVGTEYRGLQKQRELSADSTIESVLETAIFKAGGILESNYGKLQKV 125
Query: 448 QFQRSSRTDKGVSAAEQVVSLKLPLQVNV-----------EXINKRLPXTIKVFAVKRVT 594
++RSSRTDKGV + ++SLK+ + IN LP ++VF+V
Sbjct: 126 GWERSSRTDKGVHSLATMISLKMEIPDRAWENDPDGIALSNFINSNLPDNVRVFSVLPAQ 185
Query: 595 NRFNSKSKCNARSYSYTLP 651
F+ + +C R Y Y LP
Sbjct: 186 RSFDVRRECLYREYLYLLP 204
>UniRef50_Q1XD12 Cluster: TRNA pseudouridine synthase; n=1;
Pneumocystis carinii|Rep: TRNA pseudouridine synthase -
Pneumocystis carinii
Length = 227
Score = 64.1 bits (149), Expect = 3e-09
Identities = 33/83 (39%), Positives = 53/83 (63%), Gaps = 2/83 (2%)
Frame = +1
Query: 412 ITQEDFENAQNAQFQRSSRTDKGVSAAEQVVSLKLPL-QVNV-EXINKRLPXTIKVFAVK 585
I + + ++ + + R++RTD+GV AA V+SLKL + Q N+ E IN+ LP TI+V+ +
Sbjct: 21 IAEMNADDPKKSSLNRAARTDRGVHAACNVLSLKLIIEQPNLLERINEALPETIRVWGIS 80
Query: 586 RVTNRFNSKSKCNARSYSYTLPT 654
R FN ++ C AR Y Y +P+
Sbjct: 81 RTLKSFNPRTFCEARIYEYLVPS 103
>UniRef50_Q59S63 Cluster: tRNA pseudouridine synthase 1; n=2;
Saccharomycetales|Rep: tRNA pseudouridine synthase 1 -
Candida albicans (Yeast)
Length = 450
Score = 63.3 bits (147), Expect = 5e-09
Identities = 30/70 (42%), Positives = 46/70 (65%), Gaps = 2/70 (2%)
Frame = +1
Query: 451 FQRSSRTDKGVSAAEQVVSLKLPLQVN--VEXINKRLPXTIKVFAVKRVTNRFNSKSKCN 624
FQR++RTDKGV AA V+SLK+ ++ + IN LP I+++ ++R T F+ + C+
Sbjct: 41 FQRAARTDKGVHAAGNVISLKMIIEDPEIINKINDLLPKQIRIWGIQRATKGFDCRKCCS 100
Query: 625 ARSYSYTLPT 654
+R Y Y LPT
Sbjct: 101 SRIYEYLLPT 110
>UniRef50_Q8SS41 Cluster: Pseudouridylate synthase; n=1;
Encephalitozoon cuniculi|Rep: Pseudouridylate synthase -
Encephalitozoon cuniculi
Length = 345
Score = 60.1 bits (139), Expect = 5e-08
Identities = 35/123 (28%), Positives = 64/123 (52%), Gaps = 4/123 (3%)
Frame = +1
Query: 298 KMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRTDK 477
++ +L+GY G Y+G+Q N + T+ I++ + + + + SSRTDK
Sbjct: 4 RVGLLVGYDGSRYHGLQFNKDLDTVEKKIVECLLRMDAISERNAGDPRKIHIKSSSRTDK 63
Query: 478 GVSAAEQVVSLKLPLQVNVEXIN--KRL--PXTIKVFAVKRVTNRFNSKSKCNARSYSYT 645
GV AA +VS+K+ L V+ E ++ + L I ++ + R+T + +R+Y Y
Sbjct: 64 GVHAALNLVSVKIELGVSPELVSGLRELLSKEGIHLYDIVRLTKSIVPSKQAISRTYEYI 123
Query: 646 LPT 654
+PT
Sbjct: 124 VPT 126
>UniRef50_Q54TQ3 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 504
Score = 58.8 bits (136), Expect = 1e-07
Identities = 39/138 (28%), Positives = 68/138 (49%), Gaps = 14/138 (10%)
Frame = +1
Query: 283 RIKRKKM--AMLLGYSGVEYYGMQRNPGVQ--TIXXXXXXXXXXXXYITQEDFENAQNAQ 450
+I +KK+ AM+ GY G YYG+ ++ +I +I + + +
Sbjct: 83 KINKKKLSVAMVFGYDGTGYYGLGYQVDIKYPSIENLIEKVLFRCGHILPSNVGELKRLK 142
Query: 451 FQRSSRTDKGVSAAEQVVSLKLPLQVN----------VEXINKRLPXTIKVFAVKRVTNR 600
+ SSRTDKGV + V+S L + N ++ IN LP +I++F+ +V+
Sbjct: 143 WSHSSRTDKGVHSLATVISCFLVVDDNTFKNDINQTFIDTINNYLPSSIRLFSACKVSRS 202
Query: 601 FNSKSKCNARSYSYTLPT 654
F ++ K RSY+Y +P+
Sbjct: 203 FQARKKGIERSYNYMVPS 220
>UniRef50_A4RAI8 Cluster: Putative uncharacterized protein; n=1;
Magnaporthe grisea|Rep: Putative uncharacterized protein
- Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 720
Score = 58.4 bits (135), Expect = 1e-07
Identities = 31/79 (39%), Positives = 44/79 (55%)
Frame = +1
Query: 280 ERIKRKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQR 459
ER +KK+A+L+GY+G Y GMQ N +TI I++ + + + R
Sbjct: 107 ERKPKKKVAVLIGYAGTGYKGMQINHFEKTIEGDLFRAFVDAGAISKANASDPKKVSLMR 166
Query: 460 SSRTDKGVSAAEQVVSLKL 516
+RTDKGV AA V+SLKL
Sbjct: 167 CARTDKGVHAASNVISLKL 185
Score = 37.9 bits (84), Expect = 0.21
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +1
Query: 532 VEXINKRLPXTIKVFAVKRVTNRFNSKSKCNARSYSYTLPT 654
V IN LP I+V+ + R N F+ C++R Y Y +PT
Sbjct: 291 VARINSHLPDQIRVWDILRTNNSFSCYQACDSRWYEYLMPT 331
>UniRef50_A5ULI2 Cluster: Pseudouridylate synthase; n=1;
Methanobrevibacter smithii ATCC 35061|Rep:
Pseudouridylate synthase - Methanobrevibacter smithii
(strain PS / ATCC 35061 / DSM 861)
Length = 290
Score = 58.4 bits (135), Expect = 1e-07
Identities = 36/119 (30%), Positives = 58/119 (48%), Gaps = 1/119 (0%)
Frame = +1
Query: 295 KKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRTD 474
K+ A+ +GY G ++G QR P ++T+ YI ++ + ++F+ + RTD
Sbjct: 2 KRTALKIGYIGTNFHGFQRQPDLRTVEEELIYHLRKLGYI-----DDLKKSRFRIAGRTD 56
Query: 475 KGVSAAEQVVSLKLPLQVNVEXINKRLPXTIKVFAVKRVTNRFNSKSK-CNARSYSYTL 648
GV + V+S + +V V IN LP I++ A V RF K + R Y Y L
Sbjct: 57 AGVHSLGNVISFQSEKEVRVNEINNSLPDDIQILAKAPV--RFGFKPRYAEMRQYRYVL 113
>UniRef50_A3F4X8 Cluster: TRNA pseudouridine synthase A; n=1; Taenia
asiatica|Rep: TRNA pseudouridine synthase A - Taenia
asiatica (Asian tapeworm)
Length = 123
Score = 58.0 bits (134), Expect = 2e-07
Identities = 30/66 (45%), Positives = 39/66 (59%)
Frame = +1
Query: 295 KKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRTD 474
+K A+L+ YSGV + GMQRN G +TI YI +E +N FQR+S+TD
Sbjct: 57 RKCAILVVYSGVGFCGMQRNEGFRTIEGELMMALCNAGYILEEHMKNPSMICFQRASKTD 116
Query: 475 KGVSAA 492
K VSAA
Sbjct: 117 KNVSAA 122
>UniRef50_A6RCJ6 Cluster: Putative uncharacterized protein; n=1;
Ajellomyces capsulatus NAm1|Rep: Putative
uncharacterized protein - Ajellomyces capsulatus NAm1
Length = 634
Score = 56.8 bits (131), Expect = 4e-07
Identities = 36/99 (36%), Positives = 54/99 (54%), Gaps = 2/99 (2%)
Frame = +1
Query: 280 ERIKRKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQR 459
+R +KK+A++LGYSG Y GMQ + +TI I++ + + + + R
Sbjct: 116 QRRPKKKVAVMLGYSGSGYKGMQLSETEKTIEGDLFTAFVAAGAISKANATDPKKSSLVR 175
Query: 460 SSRTDKGVSAAEQVVSLKLPLQVN--VEXINKRLPXTIK 570
+RTDKGV AA VVSLKL ++ V+ IN L I+
Sbjct: 176 CARTDKGVHAAGNVVSLKLIVEDPNVVQKINGHLSPQIR 214
>UniRef50_Q54LM5 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 615
Score = 56.0 bits (129), Expect = 7e-07
Identities = 38/146 (26%), Positives = 67/146 (45%), Gaps = 16/146 (10%)
Frame = +1
Query: 262 EIKKPYERIKRKKMAMLLGYSGVEYYGMQRNPGVQ--TIXXXXXXXXXXXXYITQEDFEN 435
EI++ + +K MA+ Y+G +YYG + ++ I +I E+ N
Sbjct: 137 EIEQNLKDKSKKPMALCFAYNGSKYYGSSYSFDIRFPAIENLIEKSLIRNGHIALENIGN 196
Query: 436 AQNAQFQRSSRTDKGVSAAEQVVSLKL--------------PLQVNVEXINKRLPXTIKV 573
+ + RSSRTDKGV + V+S L P Q ++ IN+ LP I++
Sbjct: 197 LKRIKLSRSSRTDKGVHSVSTVISAFLLIDKETERLAQFGTPPQYFIDNINRYLPSDIRL 256
Query: 574 FAVKRVTNRFNSKSKCNARSYSYTLP 651
+ + + F ++ +R Y+Y +P
Sbjct: 257 ISATKPSRTFRARPASKSRVYNYLVP 282
>UniRef50_A2SU30 Cluster: Pseudouridylate synthase; n=1;
Methanocorpusculum labreanum Z|Rep: Pseudouridylate
synthase - Methanocorpusculum labreanum (strain ATCC
43576 / DSM 4855 / Z)
Length = 281
Score = 56.0 bits (129), Expect = 7e-07
Identities = 36/119 (30%), Positives = 51/119 (42%), Gaps = 1/119 (0%)
Frame = +1
Query: 298 KMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRTDK 477
K+A L GY G + G Q P +T+ F +A+ A F+ + RTDK
Sbjct: 2 KLAFLAGYRGQNFAGSQYQPHKRTVEGEFVAGGIELGL-----FSDAKEAHFRTAGRTDK 56
Query: 478 GVSAAEQVVSLKLPL-QVNVEXINKRLPXTIKVFAVKRVTNRFNSKSKCNARSYSYTLP 651
GVSA Q+ S+ ++ +E +N LP I V F + RSY Y P
Sbjct: 57 GVSARRQLFSITTEKPELAIEALNFHLPDDIWCIGAAEVDEEFYPRYAARERSYRYYFP 115
>UniRef50_O26928 Cluster: tRNA pseudouridine synthase A; n=1;
Methanothermobacter thermautotrophicus str. Delta H|Rep:
tRNA pseudouridine synthase A - Methanobacterium
thermoautotrophicum
Length = 275
Score = 56.0 bits (129), Expect = 7e-07
Identities = 38/118 (32%), Positives = 53/118 (44%)
Frame = +1
Query: 295 KKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRTD 474
+K+A+ + Y G Y+G QR P V T+ I E+ + A+FQ + RTD
Sbjct: 2 RKIALKVAYIGTNYHGFQRQPDVPTVEGKLLEALEGAGII-----EDPKRARFQIAGRTD 56
Query: 475 KGVSAAEQVVSLKLPLQVNVEXINKRLPXTIKVFAVKRVTNRFNSKSKCNARSYSYTL 648
+GV A VS ++V IN LP I+V A V F + R Y Y L
Sbjct: 57 RGVHALGNFVSFFTEEDIHVNQINDLLPRDIRVLAWASVMYPFKVRYPLE-RHYRYIL 113
>UniRef50_A4S8M4 Cluster: Predicted protein; n=2; Ostreococcus|Rep:
Predicted protein - Ostreococcus lucimarinus CCE9901
Length = 556
Score = 55.6 bits (128), Expect = 1e-06
Identities = 42/137 (30%), Positives = 61/137 (44%), Gaps = 16/137 (11%)
Frame = +1
Query: 289 KRKKMAMLLGYSGVEYYGMQRN---PGVQTIXXXXXXXXXXXXYITQEDFENA--QNAQF 453
K+K +A++L Y G Y G N P T+ I ++ + Q ++
Sbjct: 87 KKKPVAIVLAYVGQGYKGNTHNAQAPRGTTVDDVVEDALFAWGGILMPNYRSRGLQRLKW 146
Query: 454 QRSSRTDKGVSAAEQVVSLKLPLQVNV-----------EXINKRLPXTIKVFAVKRVTNR 600
RSSRTDKGVS+ VVSL+ + V I K LP ++ FAV
Sbjct: 147 SRSSRTDKGVSSLCTVVSLRAEIDPEVWTKDVEARETAREITKHLPEDVECFAVYNTPKS 206
Query: 601 FNSKSKCNARSYSYTLP 651
F ++ +C R+Y Y LP
Sbjct: 207 FQARRECIMRTYEYLLP 223
>UniRef50_A2DE30 Cluster: tRNA pseudouridine synthase family
protein; n=1; Trichomonas vaginalis G3|Rep: tRNA
pseudouridine synthase family protein - Trichomonas
vaginalis G3
Length = 345
Score = 55.6 bits (128), Expect = 1e-06
Identities = 34/124 (27%), Positives = 60/124 (48%), Gaps = 8/124 (6%)
Frame = +1
Query: 307 MLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRTDKGVS 486
+L Y G +Y+G+Q+N T+ +++ + N ++ +SRTD GV
Sbjct: 31 LLYRYIGTQYHGLQQNIDTHTVEKELFQALISAGFLSDQANCNLNRIKWSEASRTDAGVH 90
Query: 487 AAEQVVSLKLPLQVNV------EXINKRLPXTIKVFAVKRVTNR--FNSKSKCNARSYSY 642
A QV+S K + + INK+LP T + + +T R F ++ +R+Y++
Sbjct: 91 ACAQVLSFKASGLKGICIADIPDLINKQLPRTSDIEIITCITLRRQFYAQKFAESRNYNF 150
Query: 643 TLPT 654
LPT
Sbjct: 151 LLPT 154
>UniRef50_Q09524 Cluster: Probable tRNA pseudouridine synthase
tag-124; n=2; Caenorhabditis|Rep: Probable tRNA
pseudouridine synthase tag-124 - Caenorhabditis elegans
Length = 402
Score = 38.7 bits (86), Expect(2) = 4e-06
Identities = 17/38 (44%), Positives = 24/38 (63%)
Frame = +1
Query: 532 VEXINKRLPXTIKVFAVKRVTNRFNSKSKCNARSYSYT 645
V+ +N LP TI+VFA V FN++ CN R+Y Y+
Sbjct: 133 VKMLNGVLPKTIRVFAWAPVAQTFNARFDCNRRTYKYS 170
Score = 34.7 bits (76), Expect(2) = 4e-06
Identities = 21/73 (28%), Positives = 33/73 (45%)
Frame = +1
Query: 292 RKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRT 471
R+K+A+ Y G E+ G+ + P Q ++ E+ F R RT
Sbjct: 29 RRKIAIQFFYLGWEHDGLVQQPHTQNTVENHIMQALIKTHL----IEDWTKCDFSRCGRT 84
Query: 472 DKGVSAAEQVVSL 510
DKGVSA +Q ++
Sbjct: 85 DKGVSAFKQTAAM 97
>UniRef50_Q18DQ1 Cluster: Pseudouridylate synthase; n=1;
Haloquadratum walsbyi DSM 16790|Rep: Pseudouridylate
synthase - Haloquadratum walsbyi (strain DSM 16790)
Length = 276
Score = 53.6 bits (123), Expect = 4e-06
Identities = 30/115 (26%), Positives = 51/115 (44%)
Frame = +1
Query: 304 AMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRTDKGV 483
A L Y G + G QR P V T+ ++ +++ + + + RTD GV
Sbjct: 7 AFRLAYDGRPFSGFQRQPSVPTVEDALFDALDSLDVFNRDT--DSKPSGYAAAGRTDAGV 64
Query: 484 SAAEQVVSLKLPLQVNVEXINKRLPXTIKVFAVKRVTNRFNSKSKCNARSYSYTL 648
SA Q V + P +N LP +++ +A V + F++ R+Y+Y L
Sbjct: 65 SALRQTVGFECPSWCTPRALNSELPTSVRAWASADVQSGFHATHDALQRTYTYYL 119
>UniRef50_A7D6F0 Cluster: tRNA pseudouridine synthase; n=1;
Halorubrum lacusprofundi ATCC 49239|Rep: tRNA
pseudouridine synthase - Halorubrum lacusprofundi ATCC
49239
Length = 293
Score = 53.2 bits (122), Expect = 5e-06
Identities = 33/116 (28%), Positives = 50/116 (43%), Gaps = 1/116 (0%)
Frame = +1
Query: 304 AMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFE-NAQNAQFQRSSRTDKG 480
A + Y G EY G QR P T+ + + D +A + + RTD G
Sbjct: 10 AFRVAYDGREYAGFQRQPHATTVEGTLLRALAKHGILDRGDGPTHATPPGYAAAGRTDAG 69
Query: 481 VSAAEQVVSLKLPLQVNVEXINKRLPXTIKVFAVKRVTNRFNSKSKCNARSYSYTL 648
VSA Q V+ + P + N LP +++V+A V F++ R+Y Y L
Sbjct: 70 VSAVAQTVAFEAPDWLTPRAFNGHLPGSVRVWAAADVPAGFHATHDAVRRTYRYHL 125
>UniRef50_A7ASP1 Cluster: tRNA pseudouridine synthase, putative;
n=1; Babesia bovis|Rep: tRNA pseudouridine synthase,
putative - Babesia bovis
Length = 414
Score = 52.4 bits (120), Expect = 9e-06
Identities = 39/133 (29%), Positives = 55/133 (41%), Gaps = 18/133 (13%)
Frame = +1
Query: 307 MLLGYSGVEYYGMQ-----RNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRT 471
++L Y G Y+G Q + G+ T+ I N Q ++SRT
Sbjct: 31 IVLSYIGTNYHGFQIQRDAGDDGIDTVEARVINALVTTDAIHGSHKNNLGKLQLSKASRT 90
Query: 472 DKGVSAAEQVVSLKLPL-------------QVNVEXINKRLPXTIKVFAVKRVTNRFNSK 612
DKGV AA + + L Q V +N LP I+ F V RVT F ++
Sbjct: 91 DKGVHAACTYIGGRFELSHLSAGEPGISKEQCLVSRLNTVLPDDIRCFQVLRVTRGFCAR 150
Query: 613 SKCNARSYSYTLP 651
S C+ R Y Y +P
Sbjct: 151 SMCSKRMYEYVIP 163
>UniRef50_Q22TA6 Cluster: Pseudouridylate synthase; n=1; Tetrahymena
thermophila SB210|Rep: Pseudouridylate synthase -
Tetrahymena thermophila SB210
Length = 481
Score = 51.2 bits (117), Expect = 2e-05
Identities = 34/134 (25%), Positives = 57/134 (42%), Gaps = 1/134 (0%)
Frame = +1
Query: 244 ETKPPGEIKKPYERIKRKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQE 423
E K + + +E +++ A+ + Y G+ Y G+ +
Sbjct: 95 EQKQNNKKESLFEIYQQQHYALKMSYVGINYQGLAYQQETDNTVEEQLFKALEKTTL--- 151
Query: 424 DFENAQNAQFQRSSRTDKGVSAAEQVVSLKLPLQVNV-EXINKRLPXTIKVFAVKRVTNR 600
+N N F RS RTDKGVSA QV+ + L + + E I++ I++ +V
Sbjct: 152 -IKNRDNCNFTRSGRTDKGVSALGQVIGITLRTSIKIGENIDE--IDDIRILGCSKVDPA 208
Query: 601 FNSKSKCNARSYSY 642
FN++ C R Y Y
Sbjct: 209 FNARFDCQKRIYKY 222
>UniRef50_A2QE34 Cluster: Catalytic activity: tRNA uridine <=> tRNA
pseudouridine; n=1; Aspergillus niger|Rep: Catalytic
activity: tRNA uridine <=> tRNA pseudouridine -
Aspergillus niger
Length = 517
Score = 51.2 bits (117), Expect = 2e-05
Identities = 40/147 (27%), Positives = 65/147 (44%), Gaps = 9/147 (6%)
Frame = +1
Query: 229 AHRDWETKPPGEIKKPYE----RIKRKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXX 396
A + + KPP K E R + +A+ Y G Y G++ G T
Sbjct: 81 AEKKKQVKPPKPPKPRREIDPSRYNTRFIALKFAYLGQRYNGLEHANGNATPLPTIEEEM 140
Query: 397 XXXXYITQED---FENAQNAQFQRSSRTDKGVSAAEQVVSLKLPLQV-NVEXINKRLPXT 564
T+E + N ++ ++ RTD+GVSA QV+ +++ ++ V +NK LP
Sbjct: 141 YKALRKTRETKPYYINWDGCEYSKAGRTDRGVSAFGQVIGIRVRNELPYVSMLNKVLPED 200
Query: 565 IKVFA-VKRVTNRFNSKSKCNARSYSY 642
I+V A R F+++ C R Y Y
Sbjct: 201 IRVLAWCPRPPEGFDARFSCGERHYKY 227
>UniRef50_Q2NHB4 Cluster: Pseudouridylate synthase; n=1;
Methanosphaera stadtmanae DSM 3091|Rep: Pseudouridylate
synthase - Methanosphaera stadtmanae (strain DSM 3091)
Length = 274
Score = 51.2 bits (117), Expect = 2e-05
Identities = 31/119 (26%), Positives = 53/119 (44%)
Frame = +1
Query: 295 KKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRTD 474
+++A+ + Y G ++G QR P +T+ I E+ A + + RTD
Sbjct: 2 RRVALKIAYIGSNFHGYQRQPNYRTVEGELLRVFKETNII-----EDTWTAHYSVAGRTD 56
Query: 475 KGVSAAEQVVSLKLPLQVNVEXINKRLPXTIKVFAVKRVTNRFNSKSKCNARSYSYTLP 651
KGV + V+S +++ +N LP IK+ RV F + R+Y+Y P
Sbjct: 57 KGVHSTGNVISFITDEDIHINQLNGLLPDDIKIIGEARVPYGFKVRFPL-TRTYTYIQP 114
>UniRef50_A5PKS2 Cluster: LOC100101318 protein; n=4; Xenopus|Rep:
LOC100101318 protein - Xenopus laevis (African clawed
frog)
Length = 507
Score = 50.8 bits (116), Expect = 3e-05
Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 7/127 (5%)
Frame = +1
Query: 292 RKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRT 471
++ +A+ L Y G Y G + + E+ Q + + R RT
Sbjct: 58 KRHVALRLAYLGWGYQGFASQENTKNTVEETVFNALLKTRLV----ESRQTSNYHRCGRT 113
Query: 472 DKGVSAAEQVVSLKLPLQVN-------VEXINKRLPXTIKVFAVKRVTNRFNSKSKCNAR 630
D+GVSA QV+SL L V +N+ LP I+V + V F+++ C +R
Sbjct: 114 DRGVSALAQVISLDLRCSAEGKPEIRYVHILNRVLPPDIRVLSWAPVPPSFSARFSCGSR 173
Query: 631 SYSYTLP 651
+Y Y P
Sbjct: 174 TYRYLFP 180
>UniRef50_Q4Q9E9 Cluster: Pseudouridylate synthase-like protein;
n=3; Leishmania|Rep: Pseudouridylate synthase-like
protein - Leishmania major
Length = 696
Score = 50.8 bits (116), Expect = 3e-05
Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 9/80 (11%)
Frame = +1
Query: 439 QNAQFQRSSRTDKGVSAAEQVVSLKLPLQVN---------VEXINKRLPXTIKVFAVKRV 591
++ F RS RTD+GV A +VSL +P +V E +N++LP T++V V ++
Sbjct: 78 EHHHFARSCRTDRGVHAIRNMVSLFVPKEVFEKMGQAEGICEKLNRQLPATVRVANVMQL 137
Query: 592 TNRFNSKSKCNARSYSYTLP 651
+ F + CN R Y Y LP
Sbjct: 138 SGSFIPRHCCNRRVYRYMLP 157
>UniRef50_Q4Q3H7 Cluster: Putative uncharacterized protein; n=3;
Leishmania|Rep: Putative uncharacterized protein -
Leishmania major
Length = 701
Score = 50.8 bits (116), Expect = 3e-05
Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 6/98 (6%)
Frame = +1
Query: 280 ERIKRK-KMAMLLGYSGVEYYGMQRN--PGVQTIXXXXXXXXXXXXYITQEDFENAQNAQ 450
+R++RK K+ ++ GY G Y G+Q N P T+ I++ +F N + Q
Sbjct: 50 KRVRRKQKVGIIFGYVGECYCGLQWNHLPEYPTVEEALMKALFETDMISEVNFSNVKVQQ 109
Query: 451 ---FQRSSRTDKGVSAAEQVVSLKLPLQVNVEXINKRL 555
F+R+SRTDKGV A VVS+ + L + KR+
Sbjct: 110 LLNFERASRTDKGVHALRNVVSVAVMLPYDPSYTKKRV 147
Score = 39.9 bits (89), Expect = 0.052
Identities = 18/38 (47%), Positives = 22/38 (57%)
Frame = +1
Query: 541 INKRLPXTIKVFAVKRVTNRFNSKSKCNARSYSYTLPT 654
+N+ LP I V+AV VT FN+ C R Y Y LPT
Sbjct: 190 LNEALPRDIHVYAVVPVTRSFNAYLNCGGRRYEYYLPT 227
>UniRef50_Q5UXW0 Cluster: tRNA pseudouridine synthase A; n=3;
Halobacteriaceae|Rep: tRNA pseudouridine synthase A -
Haloarcula marismortui (Halobacterium marismortui)
Length = 275
Score = 50.8 bits (116), Expect = 3e-05
Identities = 33/115 (28%), Positives = 50/115 (43%)
Frame = +1
Query: 304 AMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRTDKGV 483
A + Y G Y+G QR P V T+ E E + ++ + RTD GV
Sbjct: 3 AYRVAYDGQPYHGFQRQPDVDTVEGRLRSALVRLGVC--ERGEGLPD-RYAAAGRTDAGV 59
Query: 484 SAAEQVVSLKLPLQVNVEXINKRLPXTIKVFAVKRVTNRFNSKSKCNARSYSYTL 648
SA Q V+ P ++ N LP ++V+A V F++ R+Y+Y L
Sbjct: 60 SARTQTVAFDAPAWLSPAAFNGELPNDVRVWASADVPEDFHATHDAAERTYTYYL 114
>UniRef50_Q8U2C1 Cluster: tRNA pseudouridine synthase A; n=4;
Thermococcaceae|Rep: tRNA pseudouridine synthase A -
Pyrococcus furiosus
Length = 266
Score = 50.4 bits (115), Expect = 4e-05
Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Frame = +1
Query: 298 KMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRTDK 477
++A+ + Y G +++G QR P V+TI +FEN F+ +SRTD+
Sbjct: 2 RVALKIAYDGTKFHGFQRQPNVRTIEGEILRALKDAGI----EFEN-----FKSASRTDR 52
Query: 478 GVSAAEQVVSLKLPLQ--VNVEXINKRLPXTIKVFAVKRVTNRFNSKSKCNARSYSYTLP 651
GVSA V++L N +N R+ + ++ + V F+ + N + Y Y LP
Sbjct: 53 GVSARGNVIALSTEDDRIKNPMVLNSRM-SDVWIWGIAEVPEDFHPRFWANTKVYRYYLP 111
Query: 652 T 654
+
Sbjct: 112 S 112
>UniRef50_UPI0000DB7775 Cluster: PREDICTED: similar to CG3045-PA;
n=2; Endopterygota|Rep: PREDICTED: similar to CG3045-PA
- Apis mellifera
Length = 406
Score = 49.6 bits (113), Expect = 6e-05
Identities = 46/164 (28%), Positives = 71/164 (43%), Gaps = 15/164 (9%)
Frame = +1
Query: 205 LTRYNKRRAHRDWETKPPGEIKKPYERIKRKKMAMLLG--YSGVEYYGMQRNPGVQTIXX 378
L + NK+ ++D K +KP++ K K +LL Y G +Y G VQ
Sbjct: 33 LEKENKQLKNKDIIRKS----QKPFDFSKCNKRHILLKFYYLGWDYNGFV----VQESID 84
Query: 379 XXXXXXXXXXYITQEDFENAQNAQFQRSSRTDKGVSAAEQVVSLKLPLQVNVE------- 537
I E+ + + + R RTDKGVS+ QV+SL + ++N E
Sbjct: 85 NTIEEHLFEALIKSCCIESRETSNYHRCGRTDKGVSSFSQVISLDIRSKLNPEDQYKLED 144
Query: 538 ------XINKRLPXTIKVFAVKRVTNRFNSKSKCNARSYSYTLP 651
+N+ LP I+ A V N F+++ C R+Y Y P
Sbjct: 145 ELPYCKILNRLLPSNIRCIAWCPVPNDFSARFNCKFRTYKYFFP 188
>UniRef50_Q8R601 Cluster: tRNA pseudouridine synthase A; n=3;
Fusobacterium nucleatum|Rep: tRNA pseudouridine synthase
A - Fusobacterium nucleatum subsp. nucleatum
Length = 247
Score = 49.6 bits (113), Expect = 6e-05
Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 4/125 (3%)
Frame = +1
Query: 286 IKRKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSS 465
++RK + + Y G YYG QR P T+ +T+E+ N +A
Sbjct: 3 MRRKNIKIEFRYDGSSYYGFQRQPNKITVQGEIEKVLRI---VTKEEI-NLISA-----G 53
Query: 466 RTDKGVSAAEQV----VSLKLPLQVNVEXINKRLPXTIKVFAVKRVTNRFNSKSKCNARS 633
RTD+GV A QV S +P++ + + LP I + +V+ V FN++ R
Sbjct: 54 RTDRGVHANHQVSNFYTSSNIPIEKYKYLLTRALPNDIDILSVEEVDENFNARHNAKMRE 113
Query: 634 YSYTL 648
Y Y +
Sbjct: 114 YIYII 118
>UniRef50_A2E6F9 Cluster: tRNA pseudouridine synthase family
protein; n=1; Trichomonas vaginalis G3|Rep: tRNA
pseudouridine synthase family protein - Trichomonas
vaginalis G3
Length = 346
Score = 49.2 bits (112), Expect = 9e-05
Identities = 34/119 (28%), Positives = 50/119 (42%), Gaps = 8/119 (6%)
Frame = +1
Query: 319 YSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRTDKGVSAAEQ 498
Y G Y+G+Q N V+TI + + ++ + +SRTD GV A Q
Sbjct: 39 YIGTGYHGLQYNEKVRTIDSDLFEGLEKSGILPEGSYKRRGKIAWNEASRTDAGVHACGQ 98
Query: 499 VVSLK------LPLQVNVEXINKRLPX--TIKVFAVKRVTNRFNSKSKCNARSYSYTLP 651
++ K + E INK LP TIK+ + + F K R Y+Y LP
Sbjct: 99 LICFKSYEICDMECSQIPELINKNLPSDSTIKIMSCLCTNSPFPVKDFATHRKYNYLLP 157
>UniRef50_A0DFY8 Cluster: Pseudouridylate synthase; n=1; Paramecium
tetraurelia|Rep: Pseudouridylate synthase - Paramecium
tetraurelia
Length = 414
Score = 49.2 bits (112), Expect = 9e-05
Identities = 35/124 (28%), Positives = 58/124 (46%), Gaps = 6/124 (4%)
Frame = +1
Query: 289 KRKKMAMLLGYSGVEYYGMQRNPGVQ-TIXXXXXXXXXXXXYITQEDFENAQNAQFQRSS 465
K ++A L Y G+ Y+G+++ Q TI I +N + + R+
Sbjct: 47 KFTRVAFKLAYVGINYHGLEQQINQQNTIENHLFKALQRVRMI-----DNRDDCNYTRAG 101
Query: 466 RTDKGVSAAEQVVSLKLPL-----QVNVEXINKRLPXTIKVFAVKRVTNRFNSKSKCNAR 630
RTDKGVSA VV+L + ++ + +N+ LP I++ V +FN++ C R
Sbjct: 102 RTDKGVSAIGNVVALNVRKIGKSDKLYAQILNRVLPEDIQILDECIVDEKFNARYDCIKR 161
Query: 631 SYSY 642
Y Y
Sbjct: 162 VYKY 165
>UniRef50_Q8TU65 Cluster: tRNA pseudouridine synthase A; n=5;
Archaea|Rep: tRNA pseudouridine synthase A -
Methanosarcina acetivorans
Length = 269
Score = 49.2 bits (112), Expect = 9e-05
Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 2/119 (1%)
Frame = +1
Query: 298 KMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRTDK 477
++A+ L Y G E++G Q P V+T+ I E+ ++A + + RTD
Sbjct: 2 RVALKLAYIGTEFHGSQIQPNVETVEKELFKALRNLSII-----ESPKSADYTCAGRTDA 56
Query: 478 GVSAAEQVVSL--KLPLQVNVEXINKRLPXTIKVFAVKRVTNRFNSKSKCNARSYSYTL 648
GV A QVV+ + P IN LP I +A V F+++ +R Y Y +
Sbjct: 57 GVHALGQVVAFDTEKPNLAIPRVINSELPPAIWAWAHAEVPYYFDARRSAVSRHYHYVM 115
>UniRef50_UPI00015BE519 Cluster: UPI00015BE519 related cluster; n=1;
unknown|Rep: UPI00015BE519 UniRef100 entry - unknown
Length = 247
Score = 48.8 bits (111), Expect = 1e-04
Identities = 35/122 (28%), Positives = 52/122 (42%), Gaps = 4/122 (3%)
Frame = +1
Query: 295 KKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRTD 474
K + + G Y G Q P V TI YI + Q + SRTD
Sbjct: 2 KNYKFTISFVGTNYSGWQYQPNVPTIQNEVEEKLY---YIVNKKKPIKQKIRAIGCSRTD 58
Query: 475 KGVSAAEQVVSLKLPLQVNV----EXINKRLPXTIKVFAVKRVTNRFNSKSKCNARSYSY 642
KGV A E V ++K+ ++ + +N LP IK+ ++ V FNS+ ++Y Y
Sbjct: 59 KGVHAIEFVFNVKMEFDKDLNFLRKALNSALPKDIKIHNIEEVPLEFNSRFDALKKTYIY 118
Query: 643 TL 648
L
Sbjct: 119 KL 120
>UniRef50_Q5NG36 Cluster: tRNA pseudouridine synthase A; n=11;
Francisella tularensis|Rep: tRNA pseudouridine synthase
A - Francisella tularensis subsp. tularensis
Length = 258
Score = 48.8 bits (111), Expect = 1e-04
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Frame = +1
Query: 439 QNAQFQRSSRTDKGVSAAEQVVSL----KLPLQVNVEXINKRLPXTIKVFAVKRVTNRFN 606
QN + + RTD GV A Q+V+ PL +N LP IK+ AV++V N FN
Sbjct: 41 QNIEVTCAGRTDTGVHATSQIVNFYSNADRPLSAWQRGVNALLPQDIKILAVQQVDNNFN 100
Query: 607 SKSKCNARSYSYTL 648
S+ R+Y+Y +
Sbjct: 101 SRFTAINRTYNYII 114
>UniRef50_Q9UTB3 Cluster: Pseudouridylate synthase; n=1;
Schizosaccharomyces pombe|Rep: Pseudouridylate synthase
- Schizosaccharomyces pombe (Fission yeast)
Length = 450
Score = 48.0 bits (109), Expect = 2e-04
Identities = 43/170 (25%), Positives = 72/170 (42%), Gaps = 9/170 (5%)
Frame = +1
Query: 160 KDEENKSIDIVPNKLLTRYNKRRAHRDWETKPPGEIKKPYERIKRKKMAMLLGYSGVEYY 339
K++ + +I P L + A +D + P + +P++ K +A Y G Y
Sbjct: 47 KNKLDNGNEIEPQHLSQELVLQHALQDASSLPKLKPVRPFQLEKTVFVAFKFAYCGWNYN 106
Query: 340 GM--QRNPG-VQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRTDKGVSAAEQVVSL 510
G+ Q P + T+ IT + + F R RTDKGVSA QV+SL
Sbjct: 107 GLAYQLEPTPLPTVEGKVFEALLRAHLIT-----DPSSCSFSRCGRTDKGVSAMGQVISL 161
Query: 511 KL------PLQVNVEXINKRLPXTIKVFAVKRVTNRFNSKSKCNARSYSY 642
+ P+ + + +N+ LP I++ F+++ C R Y Y
Sbjct: 162 NVRHSERRPI-IYCDVLNRLLPADIRITGYAFPPEGFDARFSCKQRHYKY 210
>UniRef50_Q64EQ0 Cluster: Pseudouridylate synthase; n=1; uncultured
archaeon GZfos10C7|Rep: Pseudouridylate synthase -
uncultured archaeon GZfos10C7
Length = 284
Score = 48.0 bits (109), Expect = 2e-04
Identities = 38/127 (29%), Positives = 58/127 (45%), Gaps = 4/127 (3%)
Frame = +1
Query: 280 ERIKRKKMAMLLGYSGVEYYGMQRNP--GVQTIXXXXXXXXXXXXYITQEDFENAQNAQF 453
E +++++A+ +GY G Y+G Q P + TI I E+ + A +
Sbjct: 3 EERQKERIALKIGYIGTNYHGFQIQPRSALPTIEGELFKALKKQGII-----EDRKTANY 57
Query: 454 QRSSRTDKGVSAAEQVVSLKLPLQ-VNVEXINKRLP-XTIKVFAVKRVTNRFNSKSKCNA 627
+ RTD GV A QVVS Q IN LP +I V A+ + + FN++ +
Sbjct: 58 SAAGRTDTGVHALAQVVSFVTSNQNTTPRMINSVLPDGSIWVSAIAKPYSGFNARRDAIS 117
Query: 628 RSYSYTL 648
R Y Y L
Sbjct: 118 REYRYYL 124
>UniRef50_A7SJV8 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 464
Score = 34.3 bits (75), Expect(2) = 2e-04
Identities = 22/91 (24%), Positives = 40/91 (43%)
Frame = +1
Query: 244 ETKPPGEIKKPYERIKRKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQE 423
++KP E + R +++A+ L Y G + +G + + +
Sbjct: 65 KSKPRKEFD--FSRYNTRRIALRLSYLGWDMHGFASQEKIDNTVEAHLFDALIKACLVK- 121
Query: 424 DFENAQNAQFQRSSRTDKGVSAAEQVVSLKL 516
+ ++ + R RTDKGVSA QV+SL +
Sbjct: 122 ---SRESCSYSRCGRTDKGVSAFGQVISLNV 149
Score = 33.1 bits (72), Expect(2) = 2e-04
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +1
Query: 532 VEXINKRLPXTIKVFAVKRVTNRFNSKSKCNARSYSYTLPT 654
V+ +NK LP I+V A V F+++ C+ R Y Y P+
Sbjct: 182 VDILNKVLPKEIRVLAWAPVELDFDARFSCSYRKYKYLFPS 222
>UniRef50_A0E7K0 Cluster: Pseudouridylate synthase; n=1; Paramecium
tetraurelia|Rep: Pseudouridylate synthase - Paramecium
tetraurelia
Length = 351
Score = 47.2 bits (107), Expect = 3e-04
Identities = 39/150 (26%), Positives = 63/150 (42%), Gaps = 30/150 (20%)
Frame = +1
Query: 292 RKKMAMLLGYSGVEYYGMQRNPGV--QTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSS 465
++K+ + GY+G Y+G+Q GV +T+ I +++ + + + R +
Sbjct: 7 KQKVLLTFGYNGANYHGLQIQKGVEFETVESKLFQALKDSNLIMEQNANDLSKSGWSRGA 66
Query: 466 RTDKGVSAAEQVVSLKL---------PLQVNVE-------------------XINKRLPX 561
RTDKGV A +++KL +Q N E IN LP
Sbjct: 67 RTDKGVHALCNSIAVKLCINKEFFKDEIQQNEEEIVSKLRDKQKVDYSKVLNVINSNLPN 126
Query: 562 TIKVFAVKRVTNRFNSKSKCNARSYSYTLP 651
IKV ++K VT F+ + R Y Y P
Sbjct: 127 DIKVHSIKLVTQGFDVRKNARYRFYEYIAP 156
>UniRef50_A2FDS7 Cluster: tRNA pseudouridine synthase family
protein; n=1; Trichomonas vaginalis G3|Rep: tRNA
pseudouridine synthase family protein - Trichomonas
vaginalis G3
Length = 365
Score = 46.8 bits (106), Expect = 5e-04
Identities = 36/125 (28%), Positives = 58/125 (46%), Gaps = 8/125 (6%)
Frame = +1
Query: 301 MAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRTDKG 480
+A+ GY G Y+G + +T+ I+ + A ++ SSRTD G
Sbjct: 40 IALCYGYLGTNYHGSSLHDQDKTVTLELQEALVNLGVISPNRTKGA--LKWSESSRTDTG 97
Query: 481 VSAAEQVVSLKLPLQVNVEX------INKRLPXT--IKVFAVKRVTNRFNSKSKCNARSY 636
V AA+QV + +L L V+ I K+L I+V+A + FN++ ++R Y
Sbjct: 98 VHAAKQVATFRLVLPEGVKVKDLPRLIQKQLSKNSPIRVWAAVKPGIIFNAQQSASSRRY 157
Query: 637 SYTLP 651
Y LP
Sbjct: 158 HYLLP 162
>UniRef50_P70830 Cluster: tRNA pseudouridine synthase A; n=3;
Borrelia burgdorferi group|Rep: tRNA pseudouridine
synthase A - Borrelia burgdorferi (Lyme disease
spirochete)
Length = 246
Score = 46.8 bits (106), Expect = 5e-04
Identities = 30/123 (24%), Positives = 52/123 (42%), Gaps = 5/123 (4%)
Frame = +1
Query: 295 KKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRTD 474
KK+ + Y G Y+G Q P T+ N + + S RTD
Sbjct: 2 KKILAEIAYDGSIYHGFQIQPTKPTVQGEIEKALMKI---------NKKKVKIHSSGRTD 52
Query: 475 KGVSAAEQVVSLKLPLQVNVEXINKR-----LPXTIKVFAVKRVTNRFNSKSKCNARSYS 639
KGV A +Q+++ + + + + + K L +IK+ ++ V N F+ + R YS
Sbjct: 53 KGVHAKKQIITFDIKINIQLNNLKKALNAILLKNSIKILKLRYVKNSFHPRFSAQKRKYS 112
Query: 640 YTL 648
Y +
Sbjct: 113 YCI 115
>UniRef50_Q8KDR7 Cluster: tRNA pseudouridine synthase A; n=9;
Chlorobiaceae|Rep: tRNA pseudouridine synthase A -
Chlorobium tepidum
Length = 247
Score = 46.4 bits (105), Expect = 6e-04
Identities = 34/123 (27%), Positives = 51/123 (41%), Gaps = 4/123 (3%)
Frame = +1
Query: 292 RKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRT 471
++ + M + Y G Y G QR PG + I QE + RT
Sbjct: 5 KRTIKMQIEYDGTGYSGWQRQPG--DVVTVQGEIERVLERIMQEP------VSIDGAGRT 56
Query: 472 DKGVSAAEQVVSLK----LPLQVNVEXINKRLPXTIKVFAVKRVTNRFNSKSKCNARSYS 639
D GV A QV S +PL + N LP TI++ A+++ F+++ +R Y
Sbjct: 57 DSGVHARRQVASFATCSPMPLGRLIYSANSLLPSTIRINAMRQAPESFHARFSATSREYR 116
Query: 640 YTL 648
Y L
Sbjct: 117 YFL 119
>UniRef50_Q0W2P8 Cluster: Pseudouridylate synthase; n=1; uncultured
methanogenic archaeon RC-I|Rep: Pseudouridylate synthase
- Uncultured methanogenic archaeon RC-I
Length = 266
Score = 46.0 bits (104), Expect = 8e-04
Identities = 32/119 (26%), Positives = 48/119 (40%), Gaps = 2/119 (1%)
Frame = +1
Query: 298 KMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRTDK 477
K A+ + Y G +YG Q PG+ T+ I + + RTD
Sbjct: 2 KTALKIAYVGTNFYGSQAQPGLPTVESELRKALEEAGAI-------KLGTKIAMAGRTDA 54
Query: 478 GVSAAEQVVSLKL--PLQVNVEXINKRLPXTIKVFAVKRVTNRFNSKSKCNARSYSYTL 648
GV A QVV+ + P IN +LP + +A V + F+ + +R Y Y L
Sbjct: 55 GVHALGQVVAFEQADPKLTAPRIINSKLPKDLWAYARAEVPDDFDPRRHATSREYRYIL 113
>UniRef50_Q8XLQ0 Cluster: tRNA pseudouridine synthase A 1; n=4;
Clostridium|Rep: tRNA pseudouridine synthase A 1 -
Clostridium perfringens
Length = 248
Score = 45.6 bits (103), Expect = 0.001
Identities = 31/123 (25%), Positives = 55/123 (44%), Gaps = 5/123 (4%)
Frame = +1
Query: 295 KKMAMLLGYSGVEYYGMQR-NPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRT 471
+ + + L Y G +Y G Q+ N + +T E+ Q RT
Sbjct: 2 RNIKITLDYDGSKYKGWQKQNQKGSNVSTVQDKLEKVLTKMTSEEI------QLIGCGRT 55
Query: 472 DKGVSAAEQVVSLK----LPLQVNVEXINKRLPXTIKVFAVKRVTNRFNSKSKCNARSYS 639
D GV A V + K + L+ +E IN+ LP I+V ++ + RF+++ +++Y
Sbjct: 56 DSGVHAKNYVANFKTNSLMTLEQIIEYINEYLPEDIRVTEIREASERFHARFNVKSKTYE 115
Query: 640 YTL 648
YT+
Sbjct: 116 YTI 118
>UniRef50_A7HCM5 Cluster: tRNA-pseudouridine synthase I; n=2;
Anaeromyxobacter|Rep: tRNA-pseudouridine synthase I -
Anaeromyxobacter sp. Fw109-5
Length = 265
Score = 44.8 bits (101), Expect = 0.002
Identities = 33/123 (26%), Positives = 52/123 (42%), Gaps = 4/123 (3%)
Frame = +1
Query: 286 IKRKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSS 465
++R+ A+ + Y G + G QR PG+ T+ A ++
Sbjct: 1 MERRFYALRVAYEGGRFRGFQRQPGLPTVQDALEGALLAAGV----------RATLAVAA 50
Query: 466 RTDKGVSAAEQVVSLKLPLQVNVE----XINKRLPXTIKVFAVKRVTNRFNSKSKCNARS 633
RTD GV A +QVVS ++ +N LP + V V RV F++++ AR
Sbjct: 51 RTDAGVHALDQVVSFSARAALDPAALRGALNAALPEGVAVLEVLRVAPSFHARNTARARR 110
Query: 634 YSY 642
Y Y
Sbjct: 111 YVY 113
>UniRef50_Q7QV27 Cluster: GLP_180_17283_16483; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_180_17283_16483 - Giardia lamblia
ATCC 50803
Length = 266
Score = 44.8 bits (101), Expect = 0.002
Identities = 29/87 (33%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Frame = +1
Query: 250 KPPGEIKKPYERIKRKKMAMLLGYSGVEYYGMQRNPGVQ-TIXXXXXXXXXXXXYITQED 426
KP + I + +A+ + Y G EY G+ + P + TI I Q
Sbjct: 76 KPSSRSLMDWSTIPLRHIAIQVCYDGTEYAGLAQQPNREYTIEELLLNALRGAALIPQH- 134
Query: 427 FENAQNAQFQRSSRTDKGVSAAEQVVS 507
A + F+RS RTD+GVSAA QV S
Sbjct: 135 -AEASDVHFERSGRTDRGVSAAGQVFS 160
>UniRef50_Q250I7 Cluster: Pseudouridylate synthase; n=2;
Desulfitobacterium hafniense|Rep: Pseudouridylate
synthase - Desulfitobacterium hafniense (strain Y51)
Length = 271
Score = 44.4 bits (100), Expect = 0.002
Identities = 29/123 (23%), Positives = 51/123 (41%), Gaps = 4/123 (3%)
Frame = +1
Query: 292 RKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRT 471
++ + + + Y G Y+G QR P + +E N + RT
Sbjct: 4 KRNICLKVAYDGTYYHGFQRQPEFHGPTIQGTLEAVWAKLVEEEVTLNT-------AGRT 56
Query: 472 DKGVSAAEQVVSLKLPLQVNVEXI----NKRLPXTIKVFAVKRVTNRFNSKSKCNARSYS 639
D GV AA QVV+ + ++ V+ I N LP I++ A + F+++ + Y
Sbjct: 57 DTGVHAAGQVVNFRTGARIPVDKIPKAFNSLLPRDIRILAAQEAAENFHARFSAKWKRYD 116
Query: 640 YTL 648
Y +
Sbjct: 117 YRI 119
>UniRef50_A0YB03 Cluster: Pseudouridylate synthase; n=10;
Gammaproteobacteria|Rep: Pseudouridylate synthase -
marine gamma proteobacterium HTCC2143
Length = 288
Score = 44.4 bits (100), Expect = 0.002
Identities = 36/123 (29%), Positives = 53/123 (43%), Gaps = 6/123 (4%)
Frame = +1
Query: 298 KMAMLLGYSGVEYYGMQ--RNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRT 471
++A+ + Y G Y+G Q R P V T+ NA N Q + RT
Sbjct: 27 RVALCVSYDGSAYHGWQSQRKPQVATVQETLEKALSSVA--------NA-NVIVQCAGRT 77
Query: 472 DKGVSAAEQVVSLKLPL----QVNVEXINKRLPXTIKVFAVKRVTNRFNSKSKCNARSYS 639
D GV A+ Q+V P + V N LP +I + K V+ +FN++ AR Y
Sbjct: 78 DTGVHASHQIVHFDSPSARGEKAWVRGGNTNLPSSIAIQWAKPVSAKFNARFSATARRYR 137
Query: 640 YTL 648
Y +
Sbjct: 138 YVI 140
>UniRef50_Q6MDE3 Cluster: tRNA pseudouridine synthase A 2; n=1;
Candidatus Protochlamydia amoebophila UWE25|Rep: tRNA
pseudouridine synthase A 2 - Protochlamydia amoebophila
(strain UWE25)
Length = 262
Score = 44.4 bits (100), Expect = 0.002
Identities = 34/140 (24%), Positives = 58/140 (41%), Gaps = 5/140 (3%)
Frame = +1
Query: 238 DWETKPPGEIKKPYERIKRKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYIT 417
D+ T+ + K + IK K + Y G Y+G Q+ P ++ T
Sbjct: 2 DYTTQSDLSLSKSMQNIKLK-----IAYDGQAYFGWQKTPAGPSVEKTLQNSLEQILQHT 56
Query: 418 QEDFENAQNAQFQRSSRTDKGVSAAEQVVSLK-----LPLQVNVEXINKRLPXTIKVFAV 582
Q +SRTDKGV A Q+V+ LQ + +N LP +++ +
Sbjct: 57 ---------ISLQAASRTDKGVHARGQIVNFLTTKSITDLQKFILSLNSLLPTDLRILSA 107
Query: 583 KRVTNRFNSKSKCNARSYSY 642
+++ + F+ C A+ Y Y
Sbjct: 108 EKMPSTFHPTLNCVAKEYCY 127
>UniRef50_UPI0000E87E98 Cluster: tRNA pseudouridine synthase A; n=1;
Methylophilales bacterium HTCC2181|Rep: tRNA
pseudouridine synthase A - Methylophilales bacterium
HTCC2181
Length = 264
Score = 43.6 bits (98), Expect = 0.004
Identities = 34/122 (27%), Positives = 54/122 (44%), Gaps = 5/122 (4%)
Frame = +1
Query: 298 KMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSS-RTD 474
++A + Y+G + G Q+ P V+TI E A++ +S RTD
Sbjct: 2 RIACSVSYNGYGFSGWQKQPDVKTIQGLIESALT----------EIAKDTVITHASGRTD 51
Query: 475 KGVSAAEQVVSLKL----PLQVNVEXINKRLPXTIKVFAVKRVTNRFNSKSKCNARSYSY 642
GV A Q++ PL V+ +N LP +IKV K ++ F+++ R Y Y
Sbjct: 52 SGVHALGQIIHFDTTKNRPLTAWVKGVNAFLPSSIKVRWAKNISESFHARHSVLEREYQY 111
Query: 643 TL 648
L
Sbjct: 112 LL 113
>UniRef50_Q1IRQ4 Cluster: Pseudouridylate synthase; n=2;
Acidobacteria|Rep: Pseudouridylate synthase -
Acidobacteria bacterium (strain Ellin345)
Length = 257
Score = 43.6 bits (98), Expect = 0.004
Identities = 33/122 (27%), Positives = 50/122 (40%), Gaps = 4/122 (3%)
Frame = +1
Query: 295 KKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRTD 474
+ + L Y G E++G Q PG TI T E Q Q S RTD
Sbjct: 3 RNFKITLAYDGHEFHGWQIQPGKPTIQGTLAE--------TIERITGEQTLP-QGSGRTD 53
Query: 475 KGVSAAEQVVSLKLPLQVNVE----XINKRLPXTIKVFAVKRVTNRFNSKSKCNARSYSY 642
GV A QV S+ L + + +N +LP +I+ V F+++ ++Y Y
Sbjct: 54 AGVHALGQVASVALQTPIPADGLHIALNDKLPPSIRALTVGEAAPDFHARHSAKGKTYRY 113
Query: 643 TL 648
+
Sbjct: 114 RI 115
>UniRef50_A0DJ25 Cluster: Pseudouridylate synthase; n=1; Paramecium
tetraurelia|Rep: Pseudouridylate synthase - Paramecium
tetraurelia
Length = 297
Score = 43.6 bits (98), Expect = 0.004
Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 21/102 (20%)
Frame = +1
Query: 412 ITQEDFENAQNAQFQRSSRTDKGVSAAEQVVSLKLPLQVN-------------------- 531
+++ + ++ + R +RTD+GV A VVSLKL +
Sbjct: 26 VSELNADSIKKIGVSRGARTDRGVHALCNVVSLKLQIDQKYCSSMTNNKLVDKWNIDWDL 85
Query: 532 -VEXINKRLPXTIKVFAVKRVTNRFNSKSKCNARSYSYTLPT 654
++ +N +LP IKV A+K VT FN K + + R Y+Y P+
Sbjct: 86 LIQELNSQLPSDIKVNAIKHVTQSFNVKHQADQRMYNYISPS 127
>UniRef50_Q8DWH1 Cluster: tRNA pseudouridine synthase A; n=42;
Lactobacillales|Rep: tRNA pseudouridine synthase A -
Streptococcus mutans
Length = 249
Score = 43.6 bits (98), Expect = 0.004
Identities = 29/115 (25%), Positives = 54/115 (46%), Gaps = 4/115 (3%)
Frame = +1
Query: 310 LLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRTDKGVSA 489
++ Y G + G QR P V+T+ T + Q + + RTD GV A
Sbjct: 7 IISYDGTNFSGFQRQPQVRTVQEEIEK--------TLLRLNSGQAVKIHGAGRTDAGVHA 58
Query: 490 AEQVVSLKLPLQVNVE----XINKRLPXTIKVFAVKRVTNRFNSKSKCNARSYSY 642
QV+ LP Q ++E ++ + P I V V++V + F+++ + + ++Y +
Sbjct: 59 YGQVIHFDLPQQRDLEKLRFGLDTQTPDDIDVIQVEQVADDFHARYQKHRKTYEF 113
>UniRef50_A6DAN4 Cluster: Pseudouridylate synthase; n=1;
Caminibacter mediatlanticus TB-2|Rep: Pseudouridylate
synthase - Caminibacter mediatlanticus TB-2
Length = 223
Score = 43.2 bits (97), Expect = 0.006
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Frame = +1
Query: 442 NAQFQRSSRTDKGVSAAEQVVSLKLP----LQVNVEXINKRLPXTIKVFAVKRVTNRFNS 609
N+ Q + RTDKGV A QV+S +P L +NK + I + +K + N FN
Sbjct: 24 NSIVQHAGRTDKGVHALNQVISFTIPNFWDLNKLQTSLNKIIHPYIHIKKIKFIKNDFNP 83
Query: 610 KSKCNARSYSYTL 648
+ RSY Y +
Sbjct: 84 RFNAKKRSYRYII 96
>UniRef50_Q6F1W2 Cluster: tRNA pseudouridine synthase A; n=3;
Mollicutes|Rep: tRNA pseudouridine synthase A -
Mesoplasma florum (Acholeplasma florum)
Length = 251
Score = 43.2 bits (97), Expect = 0.006
Identities = 38/123 (30%), Positives = 55/123 (44%), Gaps = 6/123 (4%)
Frame = +1
Query: 298 KMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQR--SSRT 471
K + L Y G +++G P TI +NA F+ +S+T
Sbjct: 3 KFLITLEYDGSDFHGWIEQPKTSTIQGELNKAINRVT----------KNAVFKTIGASKT 52
Query: 472 DKGVSAAEQVVSLKL----PLQVNVEXINKRLPXTIKVFAVKRVTNRFNSKSKCNARSYS 639
D GV A +Q V L L L + + INK LP TIKV +++ V FN + + YS
Sbjct: 53 DTGVHAIDQKVLLDLGFNPKLDLFKKAINKALPETIKVRSIEEVKQDFNIRDVL-YKEYS 111
Query: 640 YTL 648
YT+
Sbjct: 112 YTI 114
>UniRef50_A0LIV1 Cluster: Pseudouridylate synthase; n=1;
Syntrophobacter fumaroxidans MPOB|Rep: Pseudouridylate
synthase - Syntrophobacter fumaroxidans (strain DSM
10017 / MPOB)
Length = 261
Score = 42.7 bits (96), Expect = 0.007
Identities = 34/126 (26%), Positives = 53/126 (42%), Gaps = 4/126 (3%)
Frame = +1
Query: 277 YERIKRKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQ 456
Y+ +RK ++L Y G Y+G QR GV TI ++ + +
Sbjct: 4 YDLPERKNFKLILEYDGSHYHGWQRQLGVLTIQEVLE---------SRLEVMLQSPVGVR 54
Query: 457 RSSRTDKGVSAAEQVVSLKLPLQVNVE----XINKRLPXTIKVFAVKRVTNRFNSKSKCN 624
S RTD GV A QVV+ + ++ E IN LP I V + F+++
Sbjct: 55 ASGRTDAGVHACGQVVNFHVHTRLRPEEILRGINSLLPPDIVVLHAEVAAESFHARFSAT 114
Query: 625 ARSYSY 642
++Y Y
Sbjct: 115 GKTYEY 120
>UniRef50_A7PC02 Cluster: Chromosome chr2 scaffold_11, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr2 scaffold_11, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 370
Score = 42.7 bits (96), Expect = 0.007
Identities = 33/132 (25%), Positives = 53/132 (40%), Gaps = 9/132 (6%)
Frame = +1
Query: 283 RIKRKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQR- 459
R R ++L Y G + G Q+ PG+ T+ + +N +
Sbjct: 91 RWARLTFKIVLSYHGASFDGWQKQPGLNTVQGLVEASLGRFVDERKAQQLKEKNLPVEGM 150
Query: 460 ---SSRTDKGVSAAEQVVSL-----KLPLQVNVEXINKRLPXTIKVFAVKRVTNRFNSKS 615
+ RTDKGV+A +QV S + +Q + IN P ++V +V V+ F+
Sbjct: 151 VTVAGRTDKGVTALQQVCSFYTWKKDVKVQDIEDAINGAAPGKLRVISVSEVSRIFHPNF 210
Query: 616 KCNARSYSYTLP 651
R Y Y P
Sbjct: 211 SAKWRHYFYIFP 222
>UniRef50_O66953 Cluster: tRNA pseudouridine synthase A; n=1;
Aquifex aeolicus|Rep: tRNA pseudouridine synthase A -
Aquifex aeolicus
Length = 241
Score = 42.7 bits (96), Expect = 0.007
Identities = 30/116 (25%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
Frame = +1
Query: 313 LGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRTDKGVSAA 492
L + G +YG Q P ++T+ I ED + RTD GV A
Sbjct: 8 LAFVGTNFYGWQVQPNLRTVQGEIQKALSQ---ILCED------VKVTGCCRTDSGVHAL 58
Query: 493 EQVVSLK----LPLQVNVEXINKRLPXTIKVFAVKRVTNRFNSKSKCNARSYSYTL 648
+ + + K P + ++ +N LP + V+AVK+V+ FN++ + Y Y +
Sbjct: 59 DYIANFKTQKDFPEEKLLKALNGILPKDVGVYAVKKVSEEFNARYSVKGKVYLYKI 114
>UniRef50_UPI00015B40A8 Cluster: PREDICTED: similar to
pseudouridylate synthase; n=1; Nasonia vitripennis|Rep:
PREDICTED: similar to pseudouridylate synthase - Nasonia
vitripennis
Length = 421
Score = 42.3 bits (95), Expect = 0.010
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 13/87 (14%)
Frame = +1
Query: 430 ENAQNAQFQRSSRTDKGVSAAEQVVSLKLPLQVNVE-------------XINKRLPXTIK 570
E+ + + + R RTDKGVSA QV+SL + ++ E +N+ LP I+
Sbjct: 112 ESRETSNYHRCGRTDKGVSAFSQVISLDIRSRLEPEKQDNLSDELHYCKMLNRLLPKNIR 171
Query: 571 VFAVKRVTNRFNSKSKCNARSYSYTLP 651
F+ +++ C RSY Y P
Sbjct: 172 CFSWSPAHPEMSARFDCKFRSYKYFFP 198
>UniRef50_A7I4S8 Cluster: tRNA pseudouridine synthase A; n=1;
Candidatus Methanoregula boonei 6A8|Rep: tRNA
pseudouridine synthase A - Methanoregula boonei (strain
6A8)
Length = 276
Score = 42.3 bits (95), Expect = 0.010
Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 2/117 (1%)
Frame = +1
Query: 298 KMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRTDK 477
++A + Y G +YG Q+ +T+ F + + A F + RTD+
Sbjct: 16 RLACRVSYLGTRFYGSQQQESSRTVEGEFIEACRRLAL-----FSDWRTAGFASAGRTDR 70
Query: 478 GVSAAEQVV--SLKLPLQVNVEXINKRLPXTIKVFAVKRVTNRFNSKSKCNARSYSY 642
GV A QV+ S + P + + +N +LP I A V + F+ + +R+Y Y
Sbjct: 71 GVHACGQVIAFSTQTPDRAR-QALNSQLPPDIWCTATAVVPDHFHPRYDARSRTYRY 126
>UniRef50_Q820P8 Cluster: tRNA pseudouridine synthase A; n=10;
Proteobacteria|Rep: tRNA pseudouridine synthase A -
Nitrosomonas europaea
Length = 272
Score = 42.3 bits (95), Expect = 0.010
Identities = 32/121 (26%), Positives = 48/121 (39%), Gaps = 4/121 (3%)
Frame = +1
Query: 298 KMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRTDK 477
K+ + L Y G Y G Q+ PG ++ + Q + RTD
Sbjct: 13 KIVLALEYDGRGYCGWQKQPGCLSVQSRLESALSGVA---------GRQIQVVAAGRTDA 63
Query: 478 GVSAAEQVVSL----KLPLQVNVEXINKRLPXTIKVFAVKRVTNRFNSKSKCNARSYSYT 645
GV A QVV L + PL + N LP I + V++ F+++ R+Y Y
Sbjct: 64 GVHALCQVVHLETCVRRPLNAWIRGTNALLPGDISILEASEVSDDFHARFSATERTYLYY 123
Query: 646 L 648
L
Sbjct: 124 L 124
>UniRef50_Q6DI24 Cluster: Zgc:56653 protein; n=2; Danio rerio|Rep:
Zgc:56653 protein - Danio rerio (Zebrafish) (Brachydanio
rerio)
Length = 386
Score = 41.9 bits (94), Expect = 0.013
Identities = 39/156 (25%), Positives = 67/156 (42%), Gaps = 27/156 (17%)
Frame = +1
Query: 265 IKKPYE--RIKRKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENA 438
++KP++ R+ +A+ L Y G +Y G VQ + + ++
Sbjct: 46 VEKPFDFSAHPRRHVALRLAYLGWQYQGF----AVQENTDNTVEARLFEALLKTKLIQDR 101
Query: 439 QNAQFQRSSRTDKGVSAAEQVVSLKL-------------PLQVN------------VEXI 543
Q + + R RTDKGVSA QV+S+ L P V+ V+ +
Sbjct: 102 QTSCYHRCGRTDKGVSAFSQVISIDLRSTQYGGGLGVTVPADVDVKGKTSADELPYVKIL 161
Query: 544 NKRLPXTIKVFAVKRVTNRFNSKSKCNARSYSYTLP 651
N+ LP I++ V + F+++ C +R+Y Y P
Sbjct: 162 NRVLPQDIRILQWAPVESGFSARFDCQSRTYRYYFP 197
>UniRef50_Q4UIU5 Cluster: Pseudouridylate synthase; n=2;
Theileria|Rep: Pseudouridylate synthase - Theileria
annulata
Length = 478
Score = 41.9 bits (94), Expect = 0.013
Identities = 16/40 (40%), Positives = 26/40 (65%)
Frame = +1
Query: 532 VEXINKRLPXTIKVFAVKRVTNRFNSKSKCNARSYSYTLP 651
V+ +N LP I+ F ++RVT F+++S C+ R Y Y +P
Sbjct: 198 VQRLNAALPEDIRCFKIQRVTKGFDARSLCSKRKYEYIIP 237
>UniRef50_Q1FEL6 Cluster: Pseudouridylate synthase; n=1; Clostridium
phytofermentans ISDg|Rep: Pseudouridylate synthase -
Clostridium phytofermentans ISDg
Length = 264
Score = 41.5 bits (93), Expect = 0.017
Identities = 33/131 (25%), Positives = 57/131 (43%), Gaps = 4/131 (3%)
Frame = +1
Query: 274 PYERIKRKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQF 453
P E +++ + +++ Y G Y G QR P + ++++ E +
Sbjct: 2 PGEMDRKRNIKLIISYDGTNYSGWQRIP--KAANGDHSIQGLLEEFLSKVLLEPIK---L 56
Query: 454 QRSSRTDKGVSAAEQVVSL--KLPLQVNV--EXINKRLPXTIKVFAVKRVTNRFNSKSKC 621
S RTD GV A QV + + L VN+ + +N+ LP IK+ V F+S+
Sbjct: 57 IGSGRTDTGVHALGQVANFYSRSNLDVNIIRQKMNQVLPEDIKILQANEVDLNFHSRFDA 116
Query: 622 NARSYSYTLPT 654
+ Y Y + T
Sbjct: 117 VEKIYQYIIDT 127
>UniRef50_Q2FT01 Cluster: Pseudouridylate synthase; n=1;
Methanospirillum hungatei JF-1|Rep: Pseudouridylate
synthase - Methanospirillum hungatei (strain JF-1 / DSM
864)
Length = 276
Score = 41.1 bits (92), Expect = 0.023
Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 1/116 (0%)
Frame = +1
Query: 298 KMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRTDK 477
++A +GY G ++G Q P +T+ IT + Q ++ S RTD+
Sbjct: 12 RLAFRIGYIGTSFFGSQYQPDQRTVEGEIEAACLRAGIIT-----SRQVSRLALSGRTDR 66
Query: 478 GVSAAEQVVSLKL-PLQVNVEXINKRLPXTIKVFAVKRVTNRFNSKSKCNARSYSY 642
GV A Q+++L + V +N +LP I V A F + R+Y Y
Sbjct: 67 GVHAKCQILALSTHNPDLAVRALNGQLPPDIWVSAWAYAPESFYPRYDVIIRTYRY 122
>UniRef50_A0B7V0 Cluster: Pseudouridylate synthase; n=1;
Methanosaeta thermophila PT|Rep: Pseudouridylate
synthase - Methanosaeta thermophila (strain DSM 6194 /
PT) (Methanothrixthermophila (strain DSM 6194 / PT))
Length = 267
Score = 41.1 bits (92), Expect = 0.023
Identities = 33/121 (27%), Positives = 48/121 (39%), Gaps = 4/121 (3%)
Frame = +1
Query: 298 KMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRTDK 477
K+A+ + Y G YYG QR PG++T+ N F + RTD+
Sbjct: 2 KIALKIAYLGDRYYGFQRQPGLRTVESVMRDALLRI---------GVANGDFCYAGRTDR 52
Query: 478 GVSAAEQVVSLKL----PLQVNVEXINKRLPXTIKVFAVKRVTNRFNSKSKCNARSYSYT 645
GVSA QV+ + IN LP + +A F+++ R Y Y
Sbjct: 53 GVSALGQVIDFWIEEDRAYLAFPRVINSLLPSDVWAWARAVAPVGFSARWSALWREYRYF 112
Query: 646 L 648
L
Sbjct: 113 L 113
>UniRef50_Q8CWM6 Cluster: tRNA pseudouridine synthase A; n=1;
Synechococcus elongatus|Rep: tRNA pseudouridine synthase
A - Synechococcus elongatus (Thermosynechococcus
elongatus)
Length = 284
Score = 41.1 bits (92), Expect = 0.023
Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 6/126 (4%)
Frame = +1
Query: 295 KKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQN--AQFQRSSR 468
+++A+L+ Y G ++G QR G +T+ + ++ + N + R
Sbjct: 12 QRLALLIQYQGTHFHGWQRQVGQRTVQE-----------VIEQAIASVVNHPVSVVAAGR 60
Query: 469 TDKGVSAAEQV--VSLKLPLQVN--VEXINKRLPXTIKVFAVKRVTNRFNSKSKCNARSY 636
TD GV AA QV V++ P+ V+ +N RLP + + A V ++++ R Y
Sbjct: 61 TDTGVHAAGQVAHVTVNSPIPVHRWPGILNARLPADVVIRAAAAVPPDWHARFSALWRRY 120
Query: 637 SYTLPT 654
YTL T
Sbjct: 121 RYTLYT 126
>UniRef50_Q22RZ3 Cluster: TRNA pseudouridine synthase family
protein; n=1; Tetrahymena thermophila SB210|Rep: TRNA
pseudouridine synthase family protein - Tetrahymena
thermophila SB210
Length = 484
Score = 40.7 bits (91), Expect = 0.030
Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
Frame = +1
Query: 298 KMAMLLGYSGVEYYGMQ--RNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRT 471
K+A+ GY+G Y+G Q ++ ++TI I++ + A + R +RT
Sbjct: 12 KVAIFFGYNGKGYHGSQSQKDQNIKTIEKSLFEGLIDSKLISETHMGELKKAGWGRGART 71
Query: 472 DKGVSAAEQVVSLKLPLQVNVEXINKRLPXTIKVFAVKRVTNRFNSKSKCNARSYSYTLP 651
DKGV A V++K L ++ E + + P + + + K++ S Y P
Sbjct: 72 DKGVHALCNGVNVK--LAISEEYLMRGSPLRMDDKNPEEIQKEIQEKNEILLESEQYKKP 129
>UniRef50_Q8TWZ3 Cluster: tRNA pseudouridine synthase A; n=1;
Methanopyrus kandleri|Rep: tRNA pseudouridine synthase A
- Methanopyrus kandleri
Length = 256
Score = 40.7 bits (91), Expect = 0.030
Identities = 35/118 (29%), Positives = 50/118 (42%), Gaps = 1/118 (0%)
Frame = +1
Query: 298 KMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRTDK 477
++A+ + Y G Y+G Q P V TI +++ E A SRTD
Sbjct: 2 RVALRVAYDGSRYHGFQYQPDVPTIEGALRKA------LSELGLELVGYA-----SRTDA 50
Query: 478 GVSAAEQVVSLKL-PLQVNVEXINKRLPXTIKVFAVKRVTNRFNSKSKCNARSYSYTL 648
G A QVV ++ P + IN RLP I+V A V F+ + + Y Y L
Sbjct: 51 GAHARYQVVVVEGDPELAQPDPINARLPKDIRVIAKTEVHEEFDPRRDALRKEYRYFL 108
>UniRef50_Q5L3Q7 Cluster: tRNA pseudouridine synthase A; n=11;
Bacillaceae|Rep: tRNA pseudouridine synthase A -
Geobacillus kaustophilus
Length = 258
Score = 40.7 bits (91), Expect = 0.030
Identities = 30/124 (24%), Positives = 50/124 (40%), Gaps = 4/124 (3%)
Frame = +1
Query: 295 KKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRTD 474
+++ ++ Y G + G Q PG +T+ + S RTD
Sbjct: 3 QRIKCIIAYDGTHFSGYQIQPGKRTVQGEFEEVLRR--------MHKGTKVRVAASGRTD 54
Query: 475 KGVSAAEQVVSLKLPLQVNVE----XINKRLPXTIKVFAVKRVTNRFNSKSKCNARSYSY 642
GV A QV+ PL ++ E +N +LP I V V+ F+++ A+ Y Y
Sbjct: 55 AGVHAYGQVIHFDTPLSLSSEQWKKALNAQLPDDIVVRFVQEADADFHARFSAKAKEYRY 114
Query: 643 TLPT 654
+ T
Sbjct: 115 KVWT 118
>UniRef50_UPI000049A0B0 Cluster: pseudouridine synthase; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: pseudouridine
synthase - Entamoeba histolytica HM-1:IMSS
Length = 366
Score = 40.3 bits (90), Expect = 0.039
Identities = 38/145 (26%), Positives = 59/145 (40%), Gaps = 23/145 (15%)
Frame = +1
Query: 277 YERIKRKKMAMLLGYSGVEYYGMQ---RNPGVQTIXXXXXXXXXXXXYITQEDF-----E 432
+ K + +A+ L Y G++Y G+Q N + + F +
Sbjct: 30 FNNYKTRHIAIRLTYIGIDYNGIQCTLLNDVTDATFDSVINDGTIEYQLFKALFKTRLIQ 89
Query: 433 NAQNAQFQRSSRTDKGVSAAEQVVSLKLPLQVNVEXI---------------NKRLPXTI 567
N ++ ++ R RTDKGVSA QVV L + + E I N LP I
Sbjct: 90 NTKDCKYNRCGRTDKGVSAFGQVVDLWVRSNLKDETILYTKREGELDYCRMLNGLLPTDI 149
Query: 568 KVFAVKRVTNRFNSKSKCNARSYSY 642
+ V + FNS+ C +R+Y Y
Sbjct: 150 RCLGWCGVPDDFNSRFSCQSRTYHY 174
>UniRef50_Q08Z59 Cluster: Pseudouridylate synthase; n=2;
Cystobacterineae|Rep: Pseudouridylate synthase -
Stigmatella aurantiaca DW4/3-1
Length = 303
Score = 40.3 bits (90), Expect = 0.039
Identities = 34/123 (27%), Positives = 50/123 (40%), Gaps = 4/123 (3%)
Frame = +1
Query: 286 IKRKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSS 465
+KR + L Y G ++G QR P T+ A +
Sbjct: 24 LKRLSTTLWLWYRGGGFHGFQRQPEGPTVQSTLEAVLRSTGV----------PATVMPAG 73
Query: 466 RTDKGVSAAEQVVSLKLPLQVNVEXINKRLPXTIK----VFAVKRVTNRFNSKSKCNARS 633
RTD+GV A QVVSL+L E + RLP + V AV+R F+++ ++
Sbjct: 74 RTDRGVHARMQVVSLRLEAGDTPEALAARLPALLPPDLGVCAVRRPPPSFHAQWSAAGKT 133
Query: 634 YSY 642
Y Y
Sbjct: 134 YCY 136
>UniRef50_A5E2I9 Cluster: Pseudouridylate synthase; n=4;
Saccharomycetales|Rep: Pseudouridylate synthase -
Lodderomyces elongisporus (Yeast) (Saccharomyces
elongisporus)
Length = 491
Score = 40.3 bits (90), Expect = 0.039
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 17/88 (19%)
Frame = +1
Query: 430 ENAQNAQFQRSSRTDKGVSAAEQVVSLKLPLQVNVE----------------XINKRLPX 561
E + ++ + RTDKGVSA QV+S+KL + + IN LP
Sbjct: 173 EPIEEVEYSKCGRTDKGVSAMNQVISIKLRSNLTPQEQQDPAFDAKEVDYFTVINANLPA 232
Query: 562 TIKVFAV-KRVTNRFNSKSKCNARSYSY 642
IKV A+ R F+++ C R Y Y
Sbjct: 233 DIKVHAICLRPPENFDARFSCKERHYRY 260
>UniRef50_Q057U4 Cluster: Pseudouridylate synthase; n=1; Buchnera
aphidicola str. Cc (Cinara cedri)|Rep: Pseudouridylate
synthase - Buchnera aphidicola subsp. Cinara cedri
Length = 269
Score = 39.9 bits (89), Expect = 0.052
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Frame = +1
Query: 460 SSRTDKGVSAAEQVVSLKLPLQVNVE----XINKRLPXTIKVFAVKRVTNRFNSKSKCNA 627
+ RTDKGV A Q+V + N E +N LP I V +K+V++ F+++ +
Sbjct: 47 AGRTDKGVHAITQIVHFSSLIIRNEEVWFTGLNSLLPKNITVLWLKKVSSNFHARFSALS 106
Query: 628 RSYSYTL 648
RSY Y +
Sbjct: 107 RSYRYII 113
>UniRef50_Q4D8T5 Cluster: Pseudouridylate synthase I, putative; n=2;
Trypanosoma cruzi|Rep: Pseudouridylate synthase I,
putative - Trypanosoma cruzi
Length = 655
Score = 39.9 bits (89), Expect = 0.052
Identities = 26/76 (34%), Positives = 35/76 (46%), Gaps = 9/76 (11%)
Frame = +1
Query: 451 FQRSSRTDKGVSAAEQVVSLKL---------PLQVNVEXINKRLPXTIKVFAVKRVTNRF 603
F RS RTD+GV A +V L + + E +N LP TI+V V + F
Sbjct: 79 FSRSCRTDRGVHAVRNLVCLFVFTERIEALGGCEKIKEMLNTTLPLTIRVARVTPLMGNF 138
Query: 604 NSKSKCNARSYSYTLP 651
+ CN R Y Y +P
Sbjct: 139 IPRFSCNRRVYHYLIP 154
>UniRef50_Q17C60 Cluster: Pseudouridylate synthase; n=2;
Culicidae|Rep: Pseudouridylate synthase - Aedes aegypti
(Yellowfever mosquito)
Length = 467
Score = 39.9 bits (89), Expect = 0.052
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 17/91 (18%)
Frame = +1
Query: 430 ENAQNAQFQRSSRTDKGVSAAEQVVSL---------------KLPLQVN-VEXINKRLPX 561
EN + + + R RTDKGVSA QVVSL + ++N + +N+ LP
Sbjct: 115 ENRETSNYHRCGRTDKGVSAFHQVVSLDVRSKFAPENQLEPESIANEINYCQLLNRVLPQ 174
Query: 562 TIKVFA-VKRVTNRFNSKSKCNARSYSYTLP 651
I+ A + V ++++ C +R+Y Y P
Sbjct: 175 DIRCVAWMPMVNPNYSARFDCRSRTYRYFFP 205
>UniRef50_Q9PPV4 Cluster: tRNA pseudouridine synthase A; n=1;
Ureaplasma parvum|Rep: tRNA pseudouridine synthase A -
Ureaplasma parvum (Ureaplasma urealyticum biotype 1)
Length = 241
Score = 39.9 bits (89), Expect = 0.052
Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 5/117 (4%)
Frame = +1
Query: 313 LGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRTDKGVSAA 492
L Y G +YG R P +T+ I N + S RTDKGV A
Sbjct: 7 LRYDGSLFYGWARQPQKRTVQGDLEEIFKSIFKIN--------NIRIIGSGRTDKGVHAY 58
Query: 493 EQVVS-----LKLPLQVNVEXINKRLPXTIKVFAVKRVTNRFNSKSKCNARSYSYTL 648
EQ S LK + + + R I++ V++V + F+++ +++Y Y +
Sbjct: 59 EQTFSVKHSALKYDSHIIYQALCSRTSSDIQILEVQKVDDSFHAQYNATSKTYQYVI 115
>UniRef50_Q88XU9 Cluster: tRNA pseudouridine synthase A; n=10;
Lactobacillales|Rep: tRNA pseudouridine synthase A -
Lactobacillus plantarum
Length = 262
Score = 39.9 bits (89), Expect = 0.052
Identities = 30/116 (25%), Positives = 48/116 (41%), Gaps = 4/116 (3%)
Frame = +1
Query: 307 MLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRTDKGVS 486
++L Y G + G QR P +T+ + + + + + RTD GV
Sbjct: 7 VVLAYDGTNFAGFQRQPHQRTVEQVVTKA------VNKMAKDPVEPIVIYGAGRTDAGVH 60
Query: 487 AAEQVVSLKLPLQVNVEXI----NKRLPXTIKVFAVKRVTNRFNSKSKCNARSYSY 642
A Q + LP ++N E + N LP V AV V N F+++ + Y Y
Sbjct: 61 AFGQTLHFDLPYEINPEGVRRGLNSMLPMDTIVKAVSIVPNDFHARYDTVGKRYWY 116
>UniRef50_A4XKB7 Cluster: Pseudouridylate synthase; n=3;
Clostridiales|Rep: Pseudouridylate synthase -
Caldicellulosiruptor saccharolyticus (strain ATCC 43494
/ DSM 8903)
Length = 244
Score = 39.5 bits (88), Expect = 0.069
Identities = 29/122 (23%), Positives = 50/122 (40%), Gaps = 4/122 (3%)
Frame = +1
Query: 295 KKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRTD 474
+ + + + Y G Y+G Q+ P +T+ IT ED S RTD
Sbjct: 2 RNILLTIEYDGTNYFGWQKQPNKKTVQGVIEDAIKK---ITGED------VNLVGSGRTD 52
Query: 475 KGVSAAEQVVSLKLPLQVNVE----XINKRLPXTIKVFAVKRVTNRFNSKSKCNARSYSY 642
+GV A Q + K ++ E +N LP I + V+ F+++ ++Y Y
Sbjct: 53 RGVHALGQKANFKTESKIPTEKFPLALNSVLPNDISIKDAAEVSLDFSARYSAKQKTYKY 112
Query: 643 TL 648
+
Sbjct: 113 LI 114
>UniRef50_Q8IAP2 Cluster: Putative uncharacterized protein
PF08_0123; n=1; Plasmodium falciparum 3D7|Rep: Putative
uncharacterized protein PF08_0123 - Plasmodium
falciparum (isolate 3D7)
Length = 530
Score = 39.5 bits (88), Expect = 0.069
Identities = 30/99 (30%), Positives = 44/99 (44%), Gaps = 6/99 (6%)
Frame = +1
Query: 211 RYNKRRAHRDWETKPPGEIKKPYERIKR-----KKMAMLLGYSGVEYYGMQ-RNPGVQTI 372
R K + R K E K+ YE ++ KK A+ +GY G +Y+G Q + +TI
Sbjct: 18 RIKKLKLERQAIKKKEEEGKEKYENEEKNNLNLKKYALCIGYIGSQYHGCQGQGENCETI 77
Query: 373 XXXXXXXXXXXXYITQEDFENAQNAQFQRSSRTDKGVSA 489
I ++ F N RS+RTD+GV A
Sbjct: 78 ENTLERTLLKINAIKKKKFFKNFNFCLSRSARTDQGVHA 116
>UniRef50_Q4Q7E9 Cluster: Pseudouridylate synthase; n=5;
Trypanosomatidae|Rep: Pseudouridylate synthase -
Leishmania major
Length = 498
Score = 39.5 bits (88), Expect = 0.069
Identities = 34/134 (25%), Positives = 53/134 (39%), Gaps = 12/134 (8%)
Frame = +1
Query: 277 YERIKRKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQ 456
++R +K+A+ L Y G + G+ + + ED + F
Sbjct: 54 FDRYPSRKIALRLAYHGHVHDGLAKQKETDNTVEGLVCDALRRLRLIPEDGPH----NFG 109
Query: 457 RSSRTDKGVSAAEQVVSL------------KLPLQVNVEXINKRLPXTIKVFAVKRVTNR 600
R RTDKGVSA SL +LP +N LP TI++ V +
Sbjct: 110 RCGRTDKGVSALGNAFSLTARASCTGDAEPQLPPLDYCSMLNNVLPSTIRIVGCALVDDA 169
Query: 601 FNSKSKCNARSYSY 642
F+++ C R+Y Y
Sbjct: 170 FDARFSCVHRTYRY 183
>UniRef50_O28544 Cluster: tRNA pseudouridine synthase A; n=1;
Archaeoglobus fulgidus|Rep: tRNA pseudouridine synthase
A - Archaeoglobus fulgidus
Length = 265
Score = 39.5 bits (88), Expect = 0.069
Identities = 28/117 (23%), Positives = 50/117 (42%)
Frame = +1
Query: 298 KMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRTDK 477
K A + Y G ++G Q P +T+ +N + + + RTD
Sbjct: 3 KFAFKIAYFGDNFHGSQFQPDQRTVEGEVINALRRL---------GVENPRLRSAGRTDA 53
Query: 478 GVSAAEQVVSLKLPLQVNVEXINKRLPXTIKVFAVKRVTNRFNSKSKCNARSYSYTL 648
GV A QV+S ++ +N LP I +A +V+ F+ + + +R Y+Y +
Sbjct: 54 GVHAYGQVISFYSEDKIFPRMLNAELPEDITAWAWAKVSEDFDPR-RAKSRVYTYVM 109
>UniRef50_Q8GUL5 Cluster: Putative uncharacterized protein
At5g35400; n=1; Arabidopsis thaliana|Rep: Putative
uncharacterized protein At5g35400 - Arabidopsis thaliana
(Mouse-ear cress)
Length = 420
Score = 39.1 bits (87), Expect = 0.091
Identities = 31/133 (23%), Positives = 53/133 (39%), Gaps = 10/133 (7%)
Frame = +1
Query: 283 RIKRKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQR- 459
R +R ++L Y+G + G Q+ P + T+ + + +
Sbjct: 89 RWERVNFKIVLSYNGASFDGWQKQPDLHTVQGVVEKSLGGFVDERKAQLLKKKCKPLEGR 148
Query: 460 ---SSRTDKGVSAAEQVVSLKL------PLQVNVEXINKRLPXTIKVFAVKRVTNRFNSK 612
+ RTDKGVSA QV S P+ + + INK ++V ++ +V+ F+
Sbjct: 149 VLVAGRTDKGVSALNQVCSFYTWRKDIEPIAIE-DAINKDASGKLRVVSISKVSRSFHPN 207
Query: 613 SKCNARSYSYTLP 651
R Y Y P
Sbjct: 208 FSAKWRRYLYIFP 220
>UniRef50_Q654A2 Cluster: Pseudouridylate synthase; n=3; Oryza
sativa|Rep: Pseudouridylate synthase - Oryza sativa
subsp. japonica (Rice)
Length = 495
Score = 39.1 bits (87), Expect = 0.091
Identities = 33/132 (25%), Positives = 55/132 (41%), Gaps = 9/132 (6%)
Frame = +1
Query: 283 RIKRKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQR- 459
R +R ++L Y G + G Q+ PG+ T+ + A++ +
Sbjct: 117 RWERVTFKIVLSYHGGSFDGWQKQPGLNTVQGLVEKHLGQFVDEKKAKQLEARSLPLEGC 176
Query: 460 ---SSRTDKGVSAAEQVVSL----KLPLQVNV-EXINKRLPXTIKVFAVKRVTNRFNSKS 615
+ RTDKGV+A +QV S K ++ + INK P ++ V +V+ F+
Sbjct: 177 AVVAGRTDKGVTALQQVCSFYTWRKDVKSSDIKDAINKAAPDKLRPLHVSQVSREFHPNF 236
Query: 616 KCNARSYSYTLP 651
R Y Y P
Sbjct: 237 AAKWRRYLYIFP 248
>UniRef50_Q7RDA0 Cluster: Putative uncharacterized protein PY05524;
n=10; Plasmodium (Vinckeia)|Rep: Putative uncharacterized
protein PY05524 - Plasmodium yoelii yoelii
Length = 1510
Score = 39.1 bits (87), Expect = 0.091
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +1
Query: 532 VEXINKRLPXTIKVFAVKRVTNRFNSKSKCNARSYSYTLPT 654
++ +N LP IK F + +VT F+++ C+ R Y Y PT
Sbjct: 1219 IKLLNSNLPSDIKCFDIYKVTKSFDARKFCSFRLYEYLFPT 1259
>UniRef50_A3LX03 Cluster: Pseudouridylate synthase; n=4;
Saccharomycetaceae|Rep: Pseudouridylate synthase -
Pichia stipitis (Yeast)
Length = 465
Score = 39.1 bits (87), Expect = 0.091
Identities = 39/140 (27%), Positives = 59/140 (42%), Gaps = 20/140 (14%)
Frame = +1
Query: 283 RIKRKKMAMLLGYSGVEYYGM--QRNPG-VQTIXXXXXXXXXXXXYITQEDFENAQNAQF 453
+ ++ +A+ Y G Y G+ Q P + T+ IT+ +F
Sbjct: 85 KYNKRFIALKFAYLGWNYNGLAYQSEPTPLPTVEEVVLKALTMSRLITEP---TPDKCKF 141
Query: 454 QRSSRTDKGVSAAEQVVSLKLPLQVNVE----------------XINKRLPXTIKVFAV- 582
R RTDKGVSA QV+SL + +N E IN LP I++ AV
Sbjct: 142 SRCGRTDKGVSAMNQVISLVVRSNLNEEEQLLKENDHKEIKYLSIINALLPPDIRMTAVC 201
Query: 583 KRVTNRFNSKSKCNARSYSY 642
R +F+++ C+ R Y Y
Sbjct: 202 LRPPPKFDARFSCDYRHYRY 221
>UniRef50_Q57WP9 Cluster: Pseudouridylate synthase I, putative; n=1;
Trypanosoma brucei|Rep: Pseudouridylate synthase I,
putative - Trypanosoma brucei
Length = 618
Score = 38.7 bits (86), Expect = 0.12
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 9/82 (10%)
Frame = +1
Query: 433 NAQNAQFQRSSRTDKGVSAAEQVVSLKLP---LQVN------VEXINKRLPXTIKVFAVK 585
+ + F RS RTD+GV A +V L +P L+ + +N LP T++V V
Sbjct: 73 SGEEHHFARSCRTDRGVHAVRNLVCLFVPNSKLEAAGGCDRLPQLLNAHLPSTVRVERVT 132
Query: 586 RVTNRFNSKSKCNARSYSYTLP 651
V F + C +R Y Y +P
Sbjct: 133 TVMGDFIPRFCCVSRIYRYMIP 154
>UniRef50_A3CXX4 Cluster: Pseudouridylate synthase; n=1;
Methanoculleus marisnigri JR1|Rep: Pseudouridylate
synthase - Methanoculleus marisnigri (strain ATCC 35101
/ DSM 1498 / JR1)
Length = 270
Score = 38.7 bits (86), Expect = 0.12
Identities = 29/115 (25%), Positives = 48/115 (41%), Gaps = 1/115 (0%)
Frame = +1
Query: 301 MAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRTDKG 480
+A Y G ++G Q P + T+ F++ + A F + RTD+G
Sbjct: 3 LAFRFSYFGDRFFGSQMQPDLCTVEGEFIGACRLLRL-----FDDWREANFATAGRTDRG 57
Query: 481 VSAAEQVVS-LKLPLQVNVEXINKRLPXTIKVFAVKRVTNRFNSKSKCNARSYSY 642
V A QV S L + +E +N+ LP I + F+ + +R+Y Y
Sbjct: 58 VHARSQVCSFLTDKPERAIEALNRVLPADIWCTGWAEAPDGFHPRYSAVSRTYRY 112
>UniRef50_Q3A9U9 Cluster: Pseudouridylate synthase; n=1;
Carboxydothermus hydrogenoformans Z-2901|Rep:
Pseudouridylate synthase - Carboxydothermus
hydrogenoformans (strain Z-2901 / DSM 6008)
Length = 246
Score = 38.3 bits (85), Expect = 0.16
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Frame = +1
Query: 460 SSRTDKGVSAAEQVVSLKLPLQVNV----EXINKRLPXTIKVFAVKRVTNRFNSKSKCNA 627
+ RTD GV A QVV+ P + V E +N LP I+V + V + F+++
Sbjct: 52 AGRTDAGVHALGQVVNFSAPWKAPVDKIPEILNNTLPTAIRVLEAEIVPDDFHARYSARK 111
Query: 628 RSYSYTL 648
+ Y Y L
Sbjct: 112 KEYRYYL 118
>UniRef50_Q5CPW7 Cluster: Pus1p-like type II pseudousynthas TruA;
n=2; Cryptosporidium|Rep: Pus1p-like type II
pseudousynthas TruA - Cryptosporidium parvum Iowa II
Length = 501
Score = 38.3 bits (85), Expect = 0.16
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +1
Query: 514 LPLQVNVEXINKRLPXT-IKVFAVKRVTNRFNSKSKCNARSYSYTLP 651
L L V +N+ L T IKVF + RVT F++++ C+ R Y Y +P
Sbjct: 163 LILDYIVTKLNELLESTKIKVFKIFRVTKNFDARTDCSRRQYEYLMP 209
Score = 35.5 bits (78), Expect = 1.1
Identities = 29/99 (29%), Positives = 41/99 (41%), Gaps = 13/99 (13%)
Frame = +1
Query: 280 ERIKRKKMAMLLGYSGVEYYGMQ----RNPGVQTIXXXXXXXXXXXXYITQEDFENAQN- 444
E I K M GY G +Y+GMQ N V+ + + N QN
Sbjct: 3 EVIPMKTYCMSFGYDGSDYHGMQIQMRNNKKVEELRTIEGEMEDCLEKLGMFFLSNEQND 62
Query: 445 --------AQFQRSSRTDKGVSAAEQVVSLKLPLQVNVE 537
++ R RTDKGV + QVVS + +++N E
Sbjct: 63 DQGGLLKKIKWSRVGRTDKGVHSVCQVVSFRAKIKINDE 101
>UniRef50_UPI00015653AF Cluster: tRNA-pseudouridine synthase A; n=1;
Symbiobacterium thermophilum IAM 14863|Rep:
tRNA-pseudouridine synthase A - Symbiobacterium
thermophilum IAM 14863
Length = 267
Score = 37.9 bits (84), Expect = 0.21
Identities = 33/121 (27%), Positives = 48/121 (39%), Gaps = 4/121 (3%)
Frame = +1
Query: 295 KKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRTD 474
+ + ++L Y G Y G QR P TI +T E A + RTD
Sbjct: 2 RTIKLILAYDGTAYAGFQRQPNGITIQQRLEEALRA---VTGEPDLRIGAA----AGRTD 54
Query: 475 KGVSAAEQVVSLK----LPLQVNVEXINKRLPXTIKVFAVKRVTNRFNSKSKCNARSYSY 642
GV A QVV L+ +P+ +N LP I V + F+++ + Y Y
Sbjct: 55 AGVHARGQVVHLRTYATIPIDRWPAALNGHLPDDIAVIGAEEAPPDFHARYWAREKRYRY 114
Query: 643 T 645
T
Sbjct: 115 T 115
>UniRef50_Q3ZZP4 Cluster: Pseudouridylate synthase; n=3;
Dehalococcoides|Rep: Pseudouridylate synthase -
Dehalococcoides sp. (strain CBDB1)
Length = 246
Score = 37.9 bits (84), Expect = 0.21
Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Frame = +1
Query: 436 AQNAQFQRSSRTDKGVSAAEQVVSLKLPLQVNVEXI----NKRLPXTIKVFAVKRVTNRF 603
++ + S RTD GV AA QVVS + +E I N LP I V V V F
Sbjct: 35 SEQTRVSGSGRTDAGVHAAYQVVSYLTESSLGLEKIKGGLNYYLPPDIAVKEVHFVAENF 94
Query: 604 NSKSKCNARSYSY 642
+ + + +R YSY
Sbjct: 95 DVRRRAISREYSY 107
>UniRef50_Q21IY8 Cluster: Pseudouridylate synthase; n=2;
Gammaproteobacteria|Rep: Pseudouridylate synthase -
Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM
17024)
Length = 289
Score = 37.9 bits (84), Expect = 0.21
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Frame = +1
Query: 460 SSRTDKGVSAAEQVVSLKL----PLQVNVEXINKRLPXTIKVFAVKRVTNRFNSKSKCNA 627
+ RTD GV A Q+V P + ++ +N LP +I+V + K V F+++ +
Sbjct: 70 AGRTDAGVHATSQIVHFDTLAGRPSKAWLQGVNTHLPFSIRVISAKEVGFDFHARFSALS 129
Query: 628 RSYSYTL 648
R+Y Y +
Sbjct: 130 RTYRYVI 136
>UniRef50_Q9C5K6 Cluster: Pseudouridylate synthase; n=3; core
eudicotyledons|Rep: Pseudouridylate synthase -
Arabidopsis thaliana (Mouse-ear cress)
Length = 446
Score = 37.9 bits (84), Expect = 0.21
Identities = 46/201 (22%), Positives = 80/201 (39%), Gaps = 22/201 (10%)
Frame = +1
Query: 106 LAITSARLLSVMEAADVTKDEENKSIDIVPNKLLTRYNKRRAHRDWETKPPGEIKKPYER 285
L + +A+LLS + + + E + + L R +RR + + P +
Sbjct: 35 LEVENAKLLSQVSSCQCQQMEVKHDRSLSDSSSLVR--RRRVRKGDKNSIPSHL------ 86
Query: 286 IKRKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSS 465
I ++ +A+ + Y G +YG ++ + D +++ + R
Sbjct: 87 ISKRYVALKIMYFGKRFYGFSAEAQMEPSIESEVFKALERTRLLVGD---KKDSCYSRCG 143
Query: 466 RTDKGVSAAEQVVS------LKLP-----LQVN-----------VEXINKRLPXTIKVFA 579
RTDKGVS+ QV++ LK P QVN V +N+ LP I+V
Sbjct: 144 RTDKGVSSTGQVIALFLRSRLKSPPGDSKAQVNGRTGERPEYDYVRVLNRALPDDIRVIG 203
Query: 580 VKRVTNRFNSKSKCNARSYSY 642
F+++ C AR Y Y
Sbjct: 204 WSPAPIDFHARFSCYAREYKY 224
>UniRef50_Q7TU07 Cluster: tRNA pseudouridine synthase A; n=1;
Pirellula sp.|Rep: tRNA pseudouridine synthase A -
Rhodopirellula baltica
Length = 276
Score = 37.5 bits (83), Expect = 0.28
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Frame = +1
Query: 460 SSRTDKGVSAAEQVVSLKLPL----QVNVE-XINKRLPXTIKVFAVKRVTNRFNSKSKCN 624
S RTD GV A QV LP+ V ++ IN +LP I+V AV+ RF+ +
Sbjct: 54 SGRTDAGVHAIGQVARCVLPVWKADTVALQRAINSKLPNDIRVKAVRETRERFHPIADAT 113
Query: 625 ARSYSY 642
+ Y Y
Sbjct: 114 GKQYQY 119
>UniRef50_Q9BZE2 Cluster: tRNA pseudouridine synthase 3; n=19;
Euteleostomi|Rep: tRNA pseudouridine synthase 3 - Homo
sapiens (Human)
Length = 481
Score = 37.5 bits (83), Expect = 0.28
Identities = 37/143 (25%), Positives = 55/143 (38%), Gaps = 23/143 (16%)
Frame = +1
Query: 292 RKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRT 471
R+ +A+ + Y G Y G + E+ Q + + R RT
Sbjct: 62 RRHVALRIAYMGWGYQGFASQENTNNTIEEKLFEALTKTRLV----ESRQTSNYHRCGRT 117
Query: 472 DKGVSAAEQVVSLKLPLQ---------VNVE--------------XINKRLPXTIKVFAV 582
DKGVSA QV+SL L Q NV+ +N+ LP I++ A
Sbjct: 118 DKGVSAFGQVISLDLRSQFPRGRDSEDFNVKEEANAAAEEIRYTHILNRVLPPDIRILAW 177
Query: 583 KRVTNRFNSKSKCNARSYSYTLP 651
V F+++ C R+Y Y P
Sbjct: 178 APVEPSFSARFSCLERTYRYFFP 200
>UniRef50_Q3Y386 Cluster: Pseudouridylate synthase; n=3;
Firmicutes|Rep: Pseudouridylate synthase - Enterococcus
faecium DO
Length = 246
Score = 37.1 bits (82), Expect = 0.37
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Frame = +1
Query: 460 SSRTDKGVSAAEQVVSLKLPLQVN----VEXINKRLPXTIKVFAVKRVTNRFNSKSKCNA 627
S RTD G A QV + K ++ ++ +N+ LP I + ++ + RF+S+
Sbjct: 49 SGRTDAGTHARGQVANFKTNTEIGLAEMIDFMNRYLPRDIVIKRIEEMPERFHSRYNAVG 108
Query: 628 RSYSY 642
+ YSY
Sbjct: 109 KKYSY 113
>UniRef50_A6Q408 Cluster: Pseudouridylate synthase; n=2;
unclassified Epsilonproteobacteria|Rep: Pseudouridylate
synthase - Nitratiruptor sp. (strain SB155-2)
Length = 241
Score = 37.1 bits (82), Expect = 0.37
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Frame = +1
Query: 460 SSRTDKGVSAAEQVVSLKLP-----LQVNVEXINKRLPXTIKVFAVKRVTNRFNSKSKCN 624
S RTDKGV A QV+ LP L+ +N+ L I++ V +V F+++
Sbjct: 47 SGRTDKGVHATAQVIHFDLPPFWSELERLQNLLNESLRPYIQIKRVVKVPKEFHARYSAK 106
Query: 625 ARSYSYTL 648
R+Y Y L
Sbjct: 107 RRAYRYLL 114
>UniRef50_P31115 Cluster: tRNA pseudouridine synthase 3; n=5;
Saccharomycetales|Rep: tRNA pseudouridine synthase 3 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 442
Score = 37.1 bits (82), Expect = 0.37
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 17/85 (20%)
Frame = +1
Query: 439 QNAQFQRSSRTDKGVSAAEQVVSLKLPLQVN----------------VEXINKRLPXTIK 570
Q+ +F R RTDKGVSA QV+SL++ + V +N+ LP I+
Sbjct: 140 QDYKFSRCGRTDKGVSAMNQVISLEVRSNLTDEEQRDPTNDSREIPYVHVLNQLLPDDIR 199
Query: 571 VFAV-KRVTNRFNSKSKCNARSYSY 642
+ AV R F+++ C R Y Y
Sbjct: 200 ISAVCLRPPPNFDARFSCVHRHYKY 224
>UniRef50_Q9X1R0 Cluster: tRNA pseudouridine synthase A; n=5;
Thermotogaceae|Rep: tRNA pseudouridine synthase A -
Thermotoga maritima
Length = 245
Score = 36.7 bits (81), Expect = 0.49
Identities = 33/125 (26%), Positives = 53/125 (42%), Gaps = 5/125 (4%)
Frame = +1
Query: 295 KKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRTD 474
K++A ++ Y G ++G Q P V+T+ + F+ Q Q + RTD
Sbjct: 2 KRVAAVIEYDGSNFFGYQGQPDVRTVQGVIEDA-------LERIFK--QRIYTQAAGRTD 52
Query: 475 KGVSAAEQVVSLKLPL-QVNVEXI----NKRLPXTIKVFAVKRVTNRFNSKSKCNARSYS 639
GV A Q+++ P ++ E I N LP + V V V F+ + R Y
Sbjct: 53 TGVHANGQLIAFNCPNDRMTTEDIRNAMNANLPDDVYVKEVFEVPVNFHPRFDVTKRIYH 112
Query: 640 YTLPT 654
Y + T
Sbjct: 113 YFILT 117
>UniRef50_Q7MBB9 Cluster: tRNA pseudouridine synthase A; n=1;
Gloeobacter violaceus|Rep: tRNA pseudouridine synthase A
- Gloeobacter violaceus
Length = 304
Score = 36.7 bits (81), Expect = 0.49
Identities = 30/121 (24%), Positives = 51/121 (42%), Gaps = 4/121 (3%)
Frame = +1
Query: 298 KMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRTDK 477
++A+ + Y G ++G Q PG +T+ ++ + RTD
Sbjct: 16 RLALRVQYLGGHFFGWQWQPGQRTVQQCLEEATERIA---------RHPVRYHAAGRTDT 66
Query: 478 GVSAAEQVVSL----KLPLQVNVEXINKRLPXTIKVFAVKRVTNRFNSKSKCNARSYSYT 645
GV A+ QVV KL + V +N LP I V A V++ ++++ R Y Y
Sbjct: 67 GVHASGQVVHFDTHKKLAPETWVRGLNSLLPDDIAVRAAAYVSDHWHARFTALWREYRYC 126
Query: 646 L 648
+
Sbjct: 127 I 127
>UniRef50_Q4SEJ2 Cluster: Pseudouridylate synthase; n=3;
Tetraodontidae|Rep: Pseudouridylate synthase - Tetraodon
nigroviridis (Green puffer)
Length = 412
Score = 36.3 bits (80), Expect = 0.64
Identities = 35/147 (23%), Positives = 58/147 (39%), Gaps = 27/147 (18%)
Frame = +1
Query: 292 RKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRT 471
R+ +A+ L Y G Y G + Q+ Q++ + R RT
Sbjct: 72 RRHVALRLAYLGWAYQGFAVQENTDNTVEARLFEALHKTCLIQD----RQSSNYHRCGRT 127
Query: 472 DKGVSAAEQVVSL-------------KLPLQVN--------------VEXINKRLPXTIK 570
DKGVSA QV+++ KLP V+ V+ +N+ LP I+
Sbjct: 128 DKGVSAFSQVITIESRSTQFCGGLGVKLPENVDADKKSQTAVSELPYVKMLNRVLPHDIR 187
Query: 571 VFAVKRVTNRFNSKSKCNARSYSYTLP 651
++ F+++ C +R+Y Y P
Sbjct: 188 IWNWAPAAEGFSARFDCQSRTYRYYFP 214
>UniRef50_A6TWE8 Cluster: Pseudouridylate synthase; n=4;
Clostridia|Rep: Pseudouridylate synthase - Alkaliphilus
metalliredigens QYMF
Length = 255
Score = 36.3 bits (80), Expect = 0.64
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Frame = +1
Query: 460 SSRTDKGVSAAEQVVSLKLPLQVNVEXI----NKRLPXTIKVFAVKRVTNRFNSKSKCNA 627
S RTD GV A QV S +L ++ E I N +LP I + K + F+++
Sbjct: 48 SGRTDAGVHAQGQVASFQLHSKIPAERISFALNGKLPRDITILEAKEMPEDFHARYSAIG 107
Query: 628 RSYSYTL 648
+ Y Y +
Sbjct: 108 KRYGYCI 114
>UniRef50_A6BIC3 Cluster: Pseudouridylate synthase; n=1; Dorea
longicatena DSM 13814|Rep: Pseudouridylate synthase -
Dorea longicatena DSM 13814
Length = 245
Score = 36.3 bits (80), Expect = 0.64
Identities = 27/122 (22%), Positives = 50/122 (40%), Gaps = 4/122 (3%)
Frame = +1
Query: 295 KKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRTD 474
+ + + + Y G Y G R ++ +T+ED + + RT+
Sbjct: 2 RNIKLTIEYDGSRYQGWTRLGKDESGNTISNKITEVLKKMTEED-----DLELFCGCRTE 56
Query: 475 KGVSAAEQVVSLKLPLQVNVEXI----NKRLPXTIKVFAVKRVTNRFNSKSKCNARSYSY 642
GV A Q+ + K + I N+ LP I + VK V RF+++ +++Y Y
Sbjct: 57 VGVHAYAQIANFKTSSSTTTQNIKHYLNRYLPMDIAIIDVKEVPERFHAQLNATSKTYVY 116
Query: 643 TL 648
+
Sbjct: 117 RM 118
>UniRef50_A0ZG49 Cluster: Pseudouridylate synthase; n=3;
Cyanobacteria|Rep: Pseudouridylate synthase - Nodularia
spumigena CCY 9414
Length = 296
Score = 36.3 bits (80), Expect = 0.64
Identities = 29/123 (23%), Positives = 50/123 (40%), Gaps = 4/123 (3%)
Frame = +1
Query: 298 KMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRTDK 477
++A+++ Y G ++G QR +++ + + RTD
Sbjct: 13 RVALVIQYVGTHFHGWQRQKQHRSVQEEIETAIATVL---------GYHLTLHGAGRTDS 63
Query: 478 GVSAAEQVVSLK----LPLQVNVEXINKRLPXTIKVFAVKRVTNRFNSKSKCNARSYSYT 645
GV AA QV + +P +N LP I + A V NR++++ R Y YT
Sbjct: 64 GVHAAAQVAHFEATGLIPPHRWASILNSYLPQDILIKASAAVDNRWHARFSAAYRRYRYT 123
Query: 646 LPT 654
+ T
Sbjct: 124 IYT 126
>UniRef50_Q6I3T8 Cluster: tRNA pseudouridine synthase A 2; n=12;
Bacillus|Rep: tRNA pseudouridine synthase A 2 - Bacillus
anthracis
Length = 245
Score = 36.3 bits (80), Expect = 0.64
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Frame = +1
Query: 463 SRTDKGVSAAEQVVSL----KLPLQVNVEXINKRLPXTIKVFAVKRVTNRFNSKSKCNAR 630
SRTD GV A QV + KL + +N+ LP I + V+ V +RF+++ A+
Sbjct: 50 SRTDAGVHALNQVANFQSDEKLVEHKVKKYLNQYLPNDISITNVEEVHDRFHARYNSKAK 109
Query: 631 SYSYTL 648
+Y Y +
Sbjct: 110 TYLYKI 115
>UniRef50_Q011R7 Cluster: Exopolyphosphatases and related proteins;
n=3; Ostreococcus|Rep: Exopolyphosphatases and related
proteins - Ostreococcus tauri
Length = 813
Score = 35.9 bits (79), Expect = 0.85
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 9/77 (11%)
Frame = +1
Query: 439 QNAQFQRSSRTDKGVSAAEQVVSLKL-------PLQV--NVEXINKRLPXTIKVFAVKRV 591
+ A + R RTD+GVS Q+V+L++ P + V +N+ LP ++ V
Sbjct: 504 KTASYARCGRTDRGVSGLGQIVTLQVRSNGASDPREELDYVGLLNRALPSDVRALGWAPV 563
Query: 592 TNRFNSKSKCNARSYSY 642
N++ C R Y Y
Sbjct: 564 DEELNARFDCKWRQYKY 580
>UniRef50_Q8I0W4 Cluster: TRNA pseudouridine synthase, putative;
n=6; Plasmodium|Rep: TRNA pseudouridine synthase,
putative - Plasmodium falciparum (isolate 3D7)
Length = 304
Score = 35.9 bits (79), Expect = 0.85
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 11/73 (15%)
Frame = +1
Query: 457 RSSRTDKGVSAAEQVVSLKLPLQVN-----------VEXINKRLPXTIKVFAVKRVTNRF 603
R SRTDKGVSA ++L+L ++ V+ + K+L I + +K V+N F
Sbjct: 46 RVSRTDKGVSARINGINLRLNIKYENVPIFEIEKKYVKELKKKL-KNIHIHDIKHVSNTF 104
Query: 604 NSKSKCNARSYSY 642
+++ C R+Y Y
Sbjct: 105 DARLNCIQRTYVY 117
>UniRef50_A5KCH3 Cluster: Pseudouridylate synthase 1, putative; n=1;
Plasmodium vivax|Rep: Pseudouridylate synthase 1,
putative - Plasmodium vivax
Length = 587
Score = 35.9 bits (79), Expect = 0.85
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +1
Query: 535 EXINKRLPXTIKVFAVKRVTNRFNSKSKCNARSYSYTLP 651
+ +N+ LP I+ F + RVT F+++ C+ R Y Y P
Sbjct: 189 QLLNEHLPEDIRCFDMHRVTKSFDARKFCSFRLYEYLFP 227
>UniRef50_Q0UN59 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 498
Score = 35.9 bits (79), Expect = 0.85
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Frame = +3
Query: 261 RNQKTIRKD*EKKNGYAAGVLRS*IL---RYA--TKSWCTNNRRRIIKSIVG 401
R+ T R + EK+NGY + S +L YA KSWC N +I+ S+ G
Sbjct: 168 RSADTRRDEAEKRNGYITRPMNSFMLYRSAYAERAKSWCAQNNHQIVSSVAG 219
>UniRef50_Q6G7A2 Cluster: tRNA pseudouridine synthase A; n=16;
Staphylococcus|Rep: tRNA pseudouridine synthase A -
Staphylococcus aureus (strain MSSA476)
Length = 267
Score = 35.9 bits (79), Expect = 0.85
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Frame = +1
Query: 439 QNAQFQRSSRTDKGVSAAEQV----VSLKLPLQVNVEXINKRLPXTIKVFAVKRVTNRFN 606
++ + SSRTD+GV A +Q L +P+ +N+ LP I V V V + F+
Sbjct: 40 RHVRIHPSSRTDRGVHAIQQYFHFDTELNIPMSQWQYAMNRTLPDDIYVNNVVTVDDDFH 99
Query: 607 SKSKCNARSYSY 642
+ C + Y Y
Sbjct: 100 CRYDCVGKRYRY 111
>UniRef50_P60351 Cluster: tRNA pseudouridine synthase A; n=2;
Candidatus Phytoplasma asteris|Rep: tRNA pseudouridine
synthase A - Onion yellows phytoplasma
Length = 243
Score = 35.9 bits (79), Expect = 0.85
Identities = 28/116 (24%), Positives = 47/116 (40%), Gaps = 4/116 (3%)
Frame = +1
Query: 307 MLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRTDKGVS 486
++L Y G YYG Q+ P T+ + QN +SRTDKGV
Sbjct: 8 LILSYDGTCYYGYQKQPQKITVQQTFEKALKKMTH---------QNIPTFAASRTDKGVH 58
Query: 487 AAEQVVSLKLPLQVN----VEXINKRLPXTIKVFAVKRVTNRFNSKSKCNARSYSY 642
+ Q + + + + +N LP I+V + T F+++ ++ Y Y
Sbjct: 59 SQGQTLHFQTTFFLKPTHFQKTLNYLLPPDIRVRQMNFATPNFHARYSAKSKIYQY 114
>UniRef50_Q4ALX6 Cluster: Pseudouridylate synthase; n=1; Chlorobium
phaeobacteroides BS1|Rep: Pseudouridylate synthase -
Chlorobium phaeobacteroides BS1
Length = 233
Score = 35.5 bits (78), Expect = 1.1
Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 5/117 (4%)
Frame = +1
Query: 307 MLLGYSGVEYYGMQRNP-GVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRTDKGV 483
M + Y G ++ G Q+ P GV T+ I QE+ + RTD+GV
Sbjct: 1 MTIEYDGTDFSGWQKQPEGVVTVQGVLETTLSR---IVQEE------VVMTAAGRTDRGV 51
Query: 484 SAAEQVVSLKLPLQVN----VEXINKRLPXTIKVFAVKRVTNRFNSKSKCNARSYSY 642
A QV + + ++ + +N LP T+ + ++ V + F+++ R Y Y
Sbjct: 52 HARGQVANFRTASCLSTGRLLHSLNALLPSTVCIRDMQEVPDSFHARYSALFREYRY 108
>UniRef50_A3ZQX0 Cluster: Pseudouridylate synthase; n=2;
Bacteria|Rep: Pseudouridylate synthase - Blastopirellula
marina DSM 3645
Length = 260
Score = 35.5 bits (78), Expect = 1.1
Identities = 32/125 (25%), Positives = 50/125 (40%), Gaps = 4/125 (3%)
Frame = +1
Query: 286 IKRKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSS 465
+ + + +++ Y G Y G Q +TI IT E + S
Sbjct: 4 LPERALQLIVSYDGTNYAGWQIQNDQRTIQGALERTLLK---ITGEKI------RVTGSG 54
Query: 466 RTDKGVSAAEQVVSLKLPLQVNVE----XINKRLPXTIKVFAVKRVTNRFNSKSKCNARS 633
RTD GV A QVVS ++ Q++ + +N LP I V + + FN+ +
Sbjct: 55 RTDSGVHAIGQVVSFRMQSQLSPDVMRRALNAELPPDIVVQSARNAIPEFNAIDCAIKKR 114
Query: 634 YSYTL 648
Y Y L
Sbjct: 115 YRYLL 119
>UniRef50_Q7TU31 Cluster: tRNA pseudouridine synthase A; n=5;
Prochlorococcus marinus|Rep: tRNA pseudouridine synthase
A - Prochlorococcus marinus subsp. pastoris (strain CCMP
1378 / MED4)
Length = 268
Score = 35.5 bits (78), Expect = 1.1
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Frame = +1
Query: 460 SSRTDKGVSAAEQVVSLKL----PLQVNVEXINKRLPXTIKVFAVKRVTNRFNSKSKCNA 627
S RTD GV A+ QV+ + P+ + +N RLP TI++ V + +++
Sbjct: 48 SGRTDAGVHASGQVIHFDIDFLIPIDRYADVLNSRLPHTIRILESVEVKSSWHACYSAVY 107
Query: 628 RSYSYTL 648
R Y Y +
Sbjct: 108 RHYRYVI 114
>UniRef50_Q72DL8 Cluster: tRNA pseudouridine synthase A; n=2;
Desulfovibrio vulgaris subsp. vulgaris|Rep: tRNA
pseudouridine synthase A - Desulfovibrio vulgaris
(strain Hildenborough / ATCC 29579 / NCIMB8303)
Length = 297
Score = 35.5 bits (78), Expect = 1.1
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Frame = +1
Query: 439 QNAQFQRSSRTDKGVSAAEQVVSLKLP---LQVNVE-XINKRLPXTIKVFAVKRVTNRFN 606
+ + + RTD GV A QV + +P L V+ + IN +LP I + V+R + F+
Sbjct: 46 EQVRLHAAGRTDAGVHADGQVAHVDIPDHKLGVDWQKAINAQLPDDICILDVRRAADDFH 105
Query: 607 SKSKCNARSYSYTL 648
++ + Y+Y L
Sbjct: 106 ARFDALGKRYTYRL 119
>UniRef50_UPI0000E48924 Cluster: PREDICTED: similar to FKSG32,
partial; n=1; Strongylocentrotus purpuratus|Rep:
PREDICTED: similar to FKSG32, partial -
Strongylocentrotus purpuratus
Length = 224
Score = 35.1 bits (77), Expect = 1.5
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Frame = +1
Query: 262 EIKKPYE--RIKRKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFEN 435
+I +P++ + + +A+ + Y G +Y+G VQ + E+
Sbjct: 50 KIPRPFDFKKYNTRHVALKITYLGWDYHGFV----VQEDSNNTVEHHLFEALTKTKLIES 105
Query: 436 AQNAQFQRSSRTDKGVSAAEQVVSLKL 516
Q + + R RTDKGVSA QV+++ L
Sbjct: 106 RQTSNYSRCGRTDKGVSAFGQVIAIDL 132
>UniRef50_Q11XU3 Cluster: Pseudouridylate synthase; n=1; Cytophaga
hutchinsonii ATCC 33406|Rep: Pseudouridylate synthase -
Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469)
Length = 248
Score = 35.1 bits (77), Expect = 1.5
Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 5/117 (4%)
Frame = +1
Query: 313 LGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQ--RSSRTDKGVS 486
+ Y G Y+G Q T+ + Q+ N A+ S RTD GV
Sbjct: 7 ISYRGANYHGWQIQENAVTVQG-----------VLQKALSNVLGAKIDILGSGRTDTGVH 55
Query: 487 AAEQVVSLKLPLQVN---VEXINKRLPXTIKVFAVKRVTNRFNSKSKCNARSYSYTL 648
A+ Q+V L P +++ + IN LP I + + + V + +++ +R+Y Y +
Sbjct: 56 ASSQIVHLDSPKEIDAALIFRINGYLPKDICIKSARLVQDDAHARFDALSRAYVYRI 112
>UniRef50_Q5CV63 Cluster: Pseudouridylate synthase; n=2;
Cryptosporidium|Rep: Pseudouridylate synthase -
Cryptosporidium parvum Iowa II
Length = 283
Score = 35.1 bits (77), Expect = 1.5
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
Frame = +1
Query: 457 RSSRTDKGVSAAEQVVSLKLPLQVN-------VEXINKRLPXTIKVFAVKRVTNRFNSKS 615
R RTD+GV +A +S+ L + +E +N LP I+V V F+++
Sbjct: 42 RCGRTDRGVHSAGNYISVNLRTRAKNLEPYNYMEMLNGVLPWDIRVIGYCEVRPDFSARF 101
Query: 616 KCNARSYSYTLP 651
C R Y Y P
Sbjct: 102 DCEYRLYKYFFP 113
>UniRef50_A7ANH8 Cluster: tRNA pseudouridine synthase A family
protein; n=1; Babesia bovis|Rep: tRNA pseudouridine
synthase A family protein - Babesia bovis
Length = 248
Score = 35.1 bits (77), Expect = 1.5
Identities = 20/54 (37%), Positives = 27/54 (50%)
Frame = +1
Query: 481 VSAAEQVVSLKLPLQVNVEXINKRLPXTIKVFAVKRVTNRFNSKSKCNARSYSY 642
VS E+ V + + INK LP I+V VK V + F+S+ C R Y Y
Sbjct: 92 VSPDERGVGPCYRINTFTKAINKHLPRGIRVNWVKHVPDDFSSRRNCTFRVYKY 145
>UniRef50_A7I1Z3 Cluster: tRNA pseudouridine synthase A; n=1;
Campylobacter hominis ATCC BAA-381|Rep: tRNA
pseudouridine synthase A - Campylobacter hominis (strain
ATCC BAA-381 / LMG 19568 / NCTC 13146 /CH001A)
Length = 278
Score = 34.7 bits (76), Expect = 2.0
Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Frame = +1
Query: 442 NAQFQRSSRTDKGVSAAEQVVSLKLP----LQVNVEXINKRLPXTIKVFAVKRVTNRFNS 609
N + +SRTDKGV A QV + LQ IN+ +I V ++R F
Sbjct: 44 NEKVISASRTDKGVHALSQVSTTHCAAFWDLQNLRHFINRHAKPSIYVRKIERADENFQV 103
Query: 610 KSKCNARSYSYTL 648
+ ARSY Y L
Sbjct: 104 RFDAKARSYRYIL 116
>UniRef50_A7HKV8 Cluster: tRNA pseudouridine synthase A; n=1;
Fervidobacterium nodosum Rt17-B1|Rep: tRNA pseudouridine
synthase A - Fervidobacterium nodosum Rt17-B1
Length = 246
Score = 34.7 bits (76), Expect = 2.0
Identities = 33/125 (26%), Positives = 49/125 (39%), Gaps = 5/125 (4%)
Frame = +1
Query: 295 KKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRTD 474
+++A+ Y G +++G Q V+T+ I + + + RTD
Sbjct: 2 RRVAIEFSYDGTDFFGYQIQNNVRTVQGELEKALEKVFKIHIDTYA---------AGRTD 52
Query: 475 KGVSAAEQVVSLKLP---LQVN--VEXINKRLPXTIKVFAVKRVTNRFNSKSKCNARSYS 639
GV A QVVS P L N IN LP I + V FN + + R Y
Sbjct: 53 TGVHANGQVVSFDCPNDRLMENDIKNAINANLPGDIYIKKVWFTHPTFNPRYEAKRRIYH 112
Query: 640 YTLPT 654
Y + T
Sbjct: 113 YYIDT 117
>UniRef50_A7C1F2 Cluster: tRNA pseudouridine synthase A; n=1;
Beggiatoa sp. PS|Rep: tRNA pseudouridine synthase A -
Beggiatoa sp. PS
Length = 272
Score = 34.7 bits (76), Expect = 2.0
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Frame = +1
Query: 460 SSRTDKGVSAAEQVVSLKLPLQVNVEX----INKRLPXTIKVFAVKRVTNRFNSKSKCNA 627
+ RTD GV A QV+ + +Q + N LP + + + V N F+++ A
Sbjct: 47 AGRTDTGVHAIGQVIHADVTVQRSTRSWVLGTNSNLPIDVSMLWAQSVDNNFHARFSAQA 106
Query: 628 RSYSYTL 648
R Y Y +
Sbjct: 107 RHYRYII 113
>UniRef50_Q9KTA4 Cluster: tRNA pseudouridine synthase A; n=29;
Gammaproteobacteria|Rep: tRNA pseudouridine synthase A -
Vibrio cholerae
Length = 264
Score = 34.7 bits (76), Expect = 2.0
Identities = 31/121 (25%), Positives = 46/121 (38%), Gaps = 4/121 (3%)
Frame = +1
Query: 298 KMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRTDK 477
++A+ + Y G YYG QR V+++ I E Q + RTD
Sbjct: 2 RIALGIEYDGTHYYGWQRQREVKSVQEALEKALSK---IANHPVE------VQCAGRTDA 52
Query: 478 GVSAAEQVVSLKLPLQVNVEX----INKRLPXTIKVFAVKRVTNRFNSKSKCNARSYSYT 645
GV QVV + + N LP I V V + F+++ AR Y Y
Sbjct: 53 GVHGTGQVVHFDTTAERQMVAWTMGANANLPKDIAVRWAMAVPDEFHARFSATARRYRYV 112
Query: 646 L 648
+
Sbjct: 113 I 113
>UniRef50_Q6I4Q2 Cluster: tRNA pseudouridine synthase A 1; n=14;
Bacillaceae|Rep: tRNA pseudouridine synthase A 1 -
Bacillus anthracis
Length = 247
Score = 34.7 bits (76), Expect = 2.0
Identities = 26/114 (22%), Positives = 44/114 (38%), Gaps = 4/114 (3%)
Frame = +1
Query: 313 LGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRTDKGVSAA 492
+ Y G+ + G Q P +T+ + + + Q S RTD V A
Sbjct: 8 VAYDGMHFCGYQIQPQHRTVQQEIEKAL--------QKLHKGELVRVQASGRTDSTVHAK 59
Query: 493 EQVVSLKLPLQVN----VEXINKRLPXTIKVFAVKRVTNRFNSKSKCNARSYSY 642
QV+ PL + +N LP I + V++ T F+++ + Y Y
Sbjct: 60 GQVIHFDTPLSLEEWQWSNALNTMLPDDIVITQVEKKTEEFHARYGVERKEYRY 113
>UniRef50_Q4AHD2 Cluster: TRNA pseudouridine synthase; n=1;
Chlorobium phaeobacteroides BS1|Rep: TRNA pseudouridine
synthase - Chlorobium phaeobacteroides BS1
Length = 240
Score = 34.3 bits (75), Expect = 2.6
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Frame = +1
Query: 466 RTDKGVSAAEQVVSLKLP-LQVN----VEXINKRLPXTIKVFAVKRVTNRFNSKSKCNAR 630
RTD GV A + +P ++ N V +N+ LP + V+ ++ V + +S+ N+R
Sbjct: 55 RTDTGVHARAFYAHIDIPAIESNLNDLVYKLNRFLPDDLVVYFIQEVPHDLHSRFSANSR 114
Query: 631 SYSYTLPT 654
+Y Y + T
Sbjct: 115 TYKYYIST 122
>UniRef50_Q7M9U3 Cluster: tRNA pseudouridine synthase A; n=2;
Wolinella succinogenes|Rep: tRNA pseudouridine synthase
A - Wolinella succinogenes
Length = 253
Score = 34.3 bits (75), Expect = 2.6
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Frame = +1
Query: 460 SSRTDKGVSAAEQVVSLKLPLQVN-----VEXINKRLPXTIKVFAVKRVTNRFNSKSKCN 624
S RTD+GV A Q VS ++P + + E +NK+L ++V + + + + +
Sbjct: 47 SGRTDRGVHATRQAVSFEVPYKKSDWGYFKEELNKKLFPYLRVRRLYPIREGLDPRFEAK 106
Query: 625 ARSYSYTL 648
+R+Y Y L
Sbjct: 107 SRAYRYLL 114
>UniRef50_Q6MEE7 Cluster: tRNA pseudouridine synthase A 1; n=1;
Candidatus Protochlamydia amoebophila UWE25|Rep: tRNA
pseudouridine synthase A 1 - Protochlamydia amoebophila
(strain UWE25)
Length = 256
Score = 34.3 bits (75), Expect = 2.6
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Frame = +1
Query: 460 SSRTDKGVSAAEQVVSLKLPLQVNVE----XINKRLPXTIKVFAVKRVTNRFNSKSKCNA 627
S RTD GV A QV +++ +N LP I++ AV+ V+ RF+S+
Sbjct: 49 SGRTDAGVHAKGQVAHFHFQDYIDLSRLHVSLNGLLPRDIRIKAVEPVSPRFHSQYSAIR 108
Query: 628 RSYSYTL 648
+ Y Y L
Sbjct: 109 KEYHYYL 115
>UniRef50_Q30RV9 Cluster: Pseudouridylate synthase; n=1;
Thiomicrospira denitrificans ATCC 33889|Rep:
Pseudouridylate synthase - Thiomicrospira denitrificans
(strain ATCC 33889 / DSM 1351)
Length = 236
Score = 33.9 bits (74), Expect = 3.4
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Frame = +1
Query: 460 SSRTDKGVSAAEQVVSLKLP-----LQVNVEXINKRLPXTIKVFAVKRVTNRFNSKSKCN 624
S RTD+GV A+ QV + LP + + + + LP +I + +K V + F+++
Sbjct: 47 SGRTDRGVHASGQVCHIDLPPYWSDITKLQDSLGRVLPPSILIKKIKIVDDTFHARYSAK 106
Query: 625 ARSYSYTL 648
R Y Y +
Sbjct: 107 RRVYRYII 114
>UniRef50_Q7QX52 Cluster: Pseudouridylate synthase; n=1; Giardia
lamblia ATCC 50803|Rep: Pseudouridylate synthase -
Giardia lamblia ATCC 50803
Length = 351
Score = 33.9 bits (74), Expect = 3.4
Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Frame = +1
Query: 298 KMAMLLGYSGVEYYGMQRNP-GVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRTD 474
++A+L+ + G ++G P G T+ Y+ + E ++ + +R+ RTD
Sbjct: 2 RVALLVAFHGTAFHGNAYQPTGGSTVEGALFEGLQKTGYLKEN--ETIKDIELERTGRTD 59
Query: 475 KGVSAAEQVVSLKL 516
GVSA + +L+L
Sbjct: 60 AGVSAECMLYTLQL 73
>UniRef50_Q54I97 Cluster: Pseudouridylate synthase; n=1;
Dictyostelium discoideum AX4|Rep: Pseudouridylate
synthase - Dictyostelium discoideum AX4
Length = 491
Score = 33.9 bits (74), Expect = 3.4
Identities = 20/78 (25%), Positives = 35/78 (44%)
Frame = +1
Query: 277 YERIKRKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQ 456
+++ ++ +A L Y G ++G Q ++ + + A +
Sbjct: 79 FDKCYKRHVAFKLSYVGWPFFGF----AAQDCSEETIENYLIKAFLKTSLIPDIKTANYF 134
Query: 457 RSSRTDKGVSAAEQVVSL 510
+S RTDKGVSA QV+SL
Sbjct: 135 KSGRTDKGVSAYGQVISL 152
>UniRef50_A0CKA3 Cluster: Chromosome undetermined scaffold_2, whole
genome shotgun sequence; n=4; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_2,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 429
Score = 33.9 bits (74), Expect = 3.4
Identities = 19/75 (25%), Positives = 36/75 (48%)
Frame = +1
Query: 277 YERIKRKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQ 456
++++KR K+ L + + Y ++ PG+Q I TQE+ +N +N Q +
Sbjct: 290 FQKLKRSKLQESLKHK-IHMYNPKQIPGIQKIIESIQTANNTIAKTTQENVQNEENKQ-E 347
Query: 457 RSSRTDKGVSAAEQV 501
+S + D V + V
Sbjct: 348 QSDQGDNAVIENQNV 362
>UniRef50_Q7U335 Cluster: tRNA pseudouridine synthase A; n=7;
Gammaproteobacteria|Rep: tRNA pseudouridine synthase A -
Haemophilus ducreyi
Length = 261
Score = 33.5 bits (73), Expect = 4.5
Identities = 32/121 (26%), Positives = 46/121 (38%), Gaps = 4/121 (3%)
Frame = +1
Query: 298 KMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRTDK 477
K+A+ + Y G Y+G QR V ++ T E F + RTD
Sbjct: 2 KVALGIEYDGSNYFGWQRQAEVVSVQQTLEEALSKVTNTTIEVF---------CAGRTDS 52
Query: 478 GVSAAEQVV----SLKLPLQVNVEXINKRLPXTIKVFAVKRVTNRFNSKSKCNARSYSYT 645
GV QVV ++ PL N L I V +V F+++ AR Y Y
Sbjct: 53 GVHGTGQVVHFDTEVERPLASWCFGTNAHLANDIAVKWAVKVAEDFHARFSATARRYRYI 112
Query: 646 L 648
+
Sbjct: 113 I 113
>UniRef50_Q1NSM9 Cluster: Putative uncharacterized protein; n=1;
delta proteobacterium MLMS-1|Rep: Putative
uncharacterized protein - delta proteobacterium MLMS-1
Length = 90
Score = 33.1 bits (72), Expect = 6.0
Identities = 20/70 (28%), Positives = 33/70 (47%)
Frame = +1
Query: 124 RLLSVMEAADVTKDEENKSIDIVPNKLLTRYNKRRAHRDWETKPPGEIKKPYERIKRKKM 303
R L+++ D E+ V + RY R +W+T GE K+ + RI R +
Sbjct: 17 RSLALVNTYDARGAEKPAMGFTVAKRKGIRYVGGRGVTEWKTMAGGEKKRGHGRISRNPL 76
Query: 304 AMLLGYSGVE 333
+L+G G+E
Sbjct: 77 ILLVGRIGIE 86
>UniRef50_A6NVS7 Cluster: Pseudouridylate synthase; n=1; Bacteroides
capillosus ATCC 29799|Rep: Pseudouridylate synthase -
Bacteroides capillosus ATCC 29799
Length = 249
Score = 33.1 bits (72), Expect = 6.0
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Frame = +1
Query: 460 SSRTDKGVSAAEQVVSLKLPLQVNVE----XINKRLPXTIKVFAVKRVTNRFNSKSKCNA 627
+ RTD GV A + + + + + +N RLP I V V + FN+ C
Sbjct: 48 AGRTDAGVHAENYIANFRTTSTIPCDRLPLAVNTRLPEDIVVVKATEVHDGFNAIGSCIK 107
Query: 628 RSYSYTL 648
+ Y+Y +
Sbjct: 108 KEYTYRI 114
>UniRef50_A5E087 Cluster: Protein POS5; n=2; Saccharomycetales|Rep:
Protein POS5 - Lodderomyces elongisporus (Yeast)
(Saccharomyces elongisporus)
Length = 535
Score = 33.1 bits (72), Expect = 6.0
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 7/61 (11%)
Frame = +1
Query: 175 KSIDIVPNKLLTRYNKRRAHR----DWETKPPGEI---KKPYERIKRKKMAMLLGYSGVE 333
+S + +P L Y K + HR W T PP + KKP++ R+ M L+ + VE
Sbjct: 87 ESCENLPKARLPDYVKSQQHRLFNIIWRTSPPKNVLMVKKPWDATVREAMIQLINHLHVE 146
Query: 334 Y 336
Y
Sbjct: 147 Y 147
>UniRef50_Q8D2P5 Cluster: tRNA pseudouridine synthase A; n=1;
Wigglesworthia glossinidia endosymbiont of Glossina
brevipalpis|Rep: tRNA pseudouridine synthase A -
Wigglesworthia glossinidia brevipalpis
Length = 264
Score = 33.1 bits (72), Expect = 6.0
Identities = 31/123 (25%), Positives = 52/123 (42%), Gaps = 5/123 (4%)
Frame = +1
Query: 295 KKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFE-NAQNAQFQRSSRT 471
KK+A + Y G Y G Q + +I Y+ F+ + + + + RT
Sbjct: 2 KKLAAGISYQGNNYCGWQSQKNIISIQE----------YVELALFKFSGEKIKIYCAGRT 51
Query: 472 DKGVSAAEQVV----SLKLPLQVNVEXINKRLPXTIKVFAVKRVTNRFNSKSKCNARSYS 639
D V A QVV +K + + +N LP I + V +V N F+++ A+ Y
Sbjct: 52 DAKVHALLQVVHFYTDIKRSYRQWILGVNSYLPYDISIMWVIKVHNNFHARYSAIAKKYL 111
Query: 640 YTL 648
Y +
Sbjct: 112 YLI 114
>UniRef50_Q7TTT1 Cluster: tRNA pseudouridine synthase A; n=26;
Cyanobacteria|Rep: tRNA pseudouridine synthase A -
Synechococcus sp. (strain WH8102)
Length = 299
Score = 33.1 bits (72), Expect = 6.0
Identities = 31/122 (25%), Positives = 49/122 (40%), Gaps = 4/122 (3%)
Frame = +1
Query: 295 KKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRTD 474
+++A+ L Y G + G QR ++ E + + Q + RTD
Sbjct: 16 RRIALSLQYEGSAFCGWQRQRNGNSVQAQLEAAI--------EQLDPYRPIQTFAAGRTD 67
Query: 475 KGVSAAEQVVSL----KLPLQVNVEXINKRLPXTIKVFAVKRVTNRFNSKSKCNARSYSY 642
GV AA QVV ++P +N RLP TI+V +++ R Y Y
Sbjct: 68 TGVHAAGQVVHFDCGDRIPPAKWAPALNGRLPFTIRVRESVLRPKDWHACYSATYRRYRY 127
Query: 643 TL 648
T+
Sbjct: 128 TI 129
>UniRef50_UPI000023D4AE Cluster: hypothetical protein FG10837.1;
n=1; Gibberella zeae PH-1|Rep: hypothetical protein
FG10837.1 - Gibberella zeae PH-1
Length = 538
Score = 32.7 bits (71), Expect = 7.9
Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 4/94 (4%)
Frame = +1
Query: 247 TKPPGEIKKPYERIKRKKMAMLLGYSGVEYYGM--QRNPGVQTIXXXXXXXXXXXXYITQ 420
TKP + K + + +A+ L Y G Y G Q +I I
Sbjct: 45 TKPKVKRKMDPNKYTTRYIALKLAYLGKNYGGFEFQAMANAPSIEEELWNALTKACLIFP 104
Query: 421 ED--FENAQNAQFQRSSRTDKGVSAAEQVVSLKL 516
ED + ++ + RTDKGVSA QV+ L++
Sbjct: 105 EDERIVDFDCCEYSKCGRTDKGVSAFGQVIGLRV 138
>UniRef50_Q0AUL4 Cluster: Pseudouridylate synthase; n=1;
Syntrophomonas wolfei subsp. wolfei str. Goettingen|Rep:
Pseudouridylate synthase - Syntrophomonas wolfei subsp.
wolfei (strain Goettingen)
Length = 249
Score = 32.7 bits (71), Expect = 7.9
Identities = 28/121 (23%), Positives = 45/121 (37%), Gaps = 4/121 (3%)
Frame = +1
Query: 298 KMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRTDK 477
++ +LL Y G Y+G Q T+ + + A + RTD
Sbjct: 3 RIKLLLEYDGSNYHGFQLQKNANTVQAELEKAIYRL---------SGERATIVCAGRTDA 53
Query: 478 GVSAAEQVVSL----KLPLQVNVEXINKRLPXTIKVFAVKRVTNRFNSKSKCNARSYSYT 645
GV A QVV+ +P +N +LP I+V + FN + + Y Y
Sbjct: 54 GVHAWGQVVAFDSCSTIPGDRWAYALNSQLPEDIQVLESQETRAEFNPRFDALKKCYGYL 113
Query: 646 L 648
+
Sbjct: 114 I 114
>UniRef50_A5I338 Cluster: Pseudouridylate synthase; n=7;
Clostridiaceae|Rep: Pseudouridylate synthase -
Clostridium botulinum A str. ATCC 3502
Length = 246
Score = 32.7 bits (71), Expect = 7.9
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Frame = +1
Query: 460 SSRTDKGVSAAEQVVSLKLPLQVNVEXI----NKRLPXTIKVFAVKRVTNRFNSKSKCNA 627
S RTD GV A QV + Q + + I + LP I V+ V RF+S+
Sbjct: 49 SGRTDTGVHANMQVANFHTTFQGSTDEILSYCYEYLPKDIVVYDAFHVDERFHSRLNVKK 108
Query: 628 RSYSYTL 648
+ Y+Y +
Sbjct: 109 KKYTYKI 115
>UniRef50_Q8ZXR6 Cluster: tRNA pseudouridine synthase A; n=4;
Pyrobaculum|Rep: tRNA pseudouridine synthase A -
Pyrobaculum aerophilum
Length = 256
Score = 32.7 bits (71), Expect = 7.9
Identities = 20/65 (30%), Positives = 29/65 (44%)
Frame = +1
Query: 457 RSSRTDKGVSAAEQVVSLKLPLQVNVEXINKRLPXTIKVFAVKRVTNRFNSKSKCNARSY 636
R SRTD GVSA VV + + +N ++P + + V FN + + R Y
Sbjct: 38 RGSRTDPGVSAVGNVVMTGRKMALG--YVNSKMPKGAWAWGIAEVPEGFNPR-RAKLRRY 94
Query: 637 SYTLP 651
Y P
Sbjct: 95 LYVAP 99
>UniRef50_O87016 Cluster: tRNA pseudouridine synthase A; n=132;
Proteobacteria|Rep: tRNA pseudouridine synthase A -
Pseudomonas aeruginosa
Length = 285
Score = 32.7 bits (71), Expect = 7.9
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Frame = +1
Query: 460 SSRTDKGVSAAEQVV----SLKLPLQVNVEXINKRLPXTIKVFAVKRVTNRFNSKSKCNA 627
+ RTD V A+ QVV +++ PL+ V N LP I V + + F+++ A
Sbjct: 65 AGRTDAAVHASGQVVHFDTAVERPLKAWVMGTNANLPADISVTWARVMPAHFHARFSAMA 124
Query: 628 RSYSYTL 648
R Y Y +
Sbjct: 125 RRYRYAI 131
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 596,151,312
Number of Sequences: 1657284
Number of extensions: 11032294
Number of successful extensions: 30223
Number of sequences better than 10.0: 176
Number of HSP's better than 10.0 without gapping: 29278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30117
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 49173558301
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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