Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_P09
         (655 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    25   0.72 
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   8.9  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   8.9  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   8.9  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   8.9  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   8.9  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 24.6 bits (51), Expect = 0.72
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 484 THPCQSWSYVGTVHSGH 434
           T PCQ+     T+H+GH
Sbjct: 344 TSPCQNGGVCTTIHAGH 360


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +3

Query: 225 PGTSRLGDQTSRRNQKTIRKD 287
           PG S  G+Q SRR     + D
Sbjct: 406 PGCSYTGEQKSRRKGPAFKVD 426


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -2

Query: 489  SGHTLVSPGATLELCILGIFEIFLC 415
            SG T      ++E+ + G+F+  LC
Sbjct: 1098 SGGTSDDDEGSIEISLAGLFKCMLC 1122


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -2

Query: 489  SGHTLVSPGATLELCILGIFEIFLC 415
            SG T      ++E+ + G+F+  LC
Sbjct: 1098 SGGTSDDDEGSIEISLAGLFKCMLC 1122


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -2

Query: 489  SGHTLVSPGATLELCILGIFEIFLC 415
            SG T      ++E+ + G+F+  LC
Sbjct: 1098 SGGTSDDDEGSIEISLAGLFKCMLC 1122


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -2

Query: 489  SGHTLVSPGATLELCILGIFEIFLC 415
            SG T      ++E+ + G+F+  LC
Sbjct: 1098 SGGTSDDDEGSIEISLAGLFKCMLC 1122


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,042
Number of Sequences: 336
Number of extensions: 2949
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16865010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)