Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_P09
         (655 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51401| Best HMM Match : PseudoU_synth_1 (HMM E-Value=2e-28)         34   7e-06
SB_24384| Best HMM Match : I-set (HMM E-Value=4.3e-31)                 31   0.62 
SB_42413| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_26979| Best HMM Match : THF_DHG_CYH_C (HMM E-Value=0.017)           29   4.4  
SB_34244| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  

>SB_51401| Best HMM Match : PseudoU_synth_1 (HMM E-Value=2e-28)
          Length = 503

 Score = 34.3 bits (75), Expect(2) = 7e-06
 Identities = 22/91 (24%), Positives = 40/91 (43%)
 Frame = +1

Query: 244 ETKPPGEIKKPYERIKRKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQE 423
           ++KP  E    + R   +++A+ L Y G + +G      +                + + 
Sbjct: 65  KSKPRKEFD--FSRYNTRRIALRLSYLGWDMHGFASQEKIDNTVEAHLFDALIKACLVK- 121

Query: 424 DFENAQNAQFQRSSRTDKGVSAAEQVVSLKL 516
              + ++  + R  RTDKGVSA  QV+SL +
Sbjct: 122 ---SRESCSYSRCGRTDKGVSAFGQVISLNV 149



 Score = 33.1 bits (72), Expect(2) = 7e-06
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +1

Query: 532 VEXINKRLPXTIKVFAVKRVTNRFNSKSKCNARSYSYTLPT 654
           V+ +NK LP  I+V A   V   F+++  C+ R Y Y  P+
Sbjct: 182 VDILNKVLPKEIRVLAWAPVELDFDARFSCSYRKYKYLFPS 222


>SB_24384| Best HMM Match : I-set (HMM E-Value=4.3e-31)
          Length = 1399

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = +1

Query: 124  RLLSVMEAADVTKDEENKSIDIVPNKLLTRYNKRRAHR--DWETKPPGE 264
            R  SV+ A DV   EEN +++IV ++++ +   RRA    D  T PP +
Sbjct: 1106 RYASVV-ATDVPAGEENNTVEIVTDEIVVKVESRRAKTLYDGHTFPPND 1153


>SB_42413| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 639

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 18/62 (29%), Positives = 32/62 (51%)
 Frame = +1

Query: 142 EAADVTKDEENKSIDIVPNKLLTRYNKRRAHRDWETKPPGEIKKPYERIKRKKMAMLLGY 321
           E    T +++N+  D +  K    +NK   H + ++   G++ K  ERI++K+ A   G 
Sbjct: 334 ELDGATHNKQNE--DKIDEKNENEHNKLNEHCEGDSHNEGKMDKENERIEQKEDATKSGA 391

Query: 322 SG 327
           SG
Sbjct: 392 SG 393


>SB_26979| Best HMM Match : THF_DHG_CYH_C (HMM E-Value=0.017)
          Length = 453

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -1

Query: 256 EVWSPNRDVPGVCCTSLIAYSALYRLTYFLHLS 158
           + +SP  D   +   SL+ +SA+YRL+YF  LS
Sbjct: 378 DTFSPKPDA--IFIPSLVLFSAVYRLSYFCALS 408


>SB_34244| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 166

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 586 RVTNRFNSKSKCNARSYSYTLPT 654
           + T  F+ K  C+AR+Y Y  PT
Sbjct: 3   KTTKAFDCKQNCSARTYEYLTPT 25


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,731,849
Number of Sequences: 59808
Number of extensions: 359830
Number of successful extensions: 951
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 950
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)