Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_P09
         (655 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021572-2|CAA16518.1|  415|Caenorhabditis elegans Hypothetical ...    95   4e-20
Z47075-5|CAA87378.1|  402|Caenorhabditis elegans Hypothetical pr...    39   2e-07
Z81128-8|CAB03402.1|  811|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z81056-6|CAB02906.1|  398|Caenorhabditis elegans Hypothetical pr...    30   1.6  
U40959-3|AAA81767.2|  445|Caenorhabditis elegans Hypothetical pr...    29   3.8  

>AL021572-2|CAA16518.1|  415|Caenorhabditis elegans Hypothetical
           protein W06H3.2 protein.
          Length = 415

 Score = 95.1 bits (226), Expect = 4e-20
 Identities = 55/137 (40%), Positives = 78/137 (56%), Gaps = 6/137 (4%)
 Frame = +1

Query: 262 EIKKPYERIKRKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQ 441
           E KKP  R+K+ K AMLLGY G +YYGMQ    + TI            +IT    E   
Sbjct: 24  EPKKP--RVKQAKYAMLLGYQGKKYYGMQLQKDLPTIESKLLEAMETAGWITTAQKEKPF 81

Query: 442 NAQFQRSSRTDKGVSAAEQVVSLKLP---LQVNVE---XINKRLPXTIKVFAVKRVTNRF 603
           +  FQR++RTD+ VSAA Q+  ++LP    +   E    +N  LP  I+VF ++R TN F
Sbjct: 82  DFFFQRAARTDRAVSAARQMCGMQLPRDDAKYQAEGAGILNNILPADIRVFGMRRTTNFF 141

Query: 604 NSKSKCNARSYSYTLPT 654
           + + +C+ R+YSYT P+
Sbjct: 142 HPQKQCDHRTYSYTCPS 158


>Z47075-5|CAA87378.1|  402|Caenorhabditis elegans Hypothetical
           protein E02H1.3 protein.
          Length = 402

 Score = 38.7 bits (86), Expect(2) = 2e-07
 Identities = 17/38 (44%), Positives = 24/38 (63%)
 Frame = +1

Query: 532 VEXINKRLPXTIKVFAVKRVTNRFNSKSKCNARSYSYT 645
           V+ +N  LP TI+VFA   V   FN++  CN R+Y Y+
Sbjct: 133 VKMLNGVLPKTIRVFAWAPVAQTFNARFDCNRRTYKYS 170



 Score = 33.9 bits (74), Expect(2) = 2e-07
 Identities = 21/73 (28%), Positives = 33/73 (45%)
 Frame = +1

Query: 292 RKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRT 471
           R+K+A+   Y G E+ G+ + P  Q              ++     E+     F R  RT
Sbjct: 29  RRKIAIQFFYLGWEHDGLVQQPHTQNTVENHIMQALIKTHL----IEDWTKCDFSRCGRT 84

Query: 472 DKGVSAAEQVVSL 510
           DKGVSA +Q  ++
Sbjct: 85  DKGVSAFKQTAAM 97


>Z81128-8|CAB03402.1|  811|Caenorhabditis elegans Hypothetical
           protein T23D8.9a protein.
          Length = 811

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +2

Query: 347 NEILVYKQ*KKNY*KHCWTLNILHRKISKMPRMHSSNVAPGLTRVCPLL-NKLSHLN 514
           + ++ +KQ  K+       + +LH  ISK PR+     AP   RVC ++ N L  LN
Sbjct: 529 SNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLN 585


>Z81056-6|CAB02906.1|  398|Caenorhabditis elegans Hypothetical
           protein F09F3.10 protein.
          Length = 398

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
 Frame = -3

Query: 278 YGFLISPGGLVSQSRCARRLLY---LVNSLFGTISIDLFSSSFVTSAASITD 132
           YG LI    L+   RCA +L+Y    V+ LF     DL+ SSF  +A ++++
Sbjct: 332 YGQLIL---LLGNIRCAVKLVYNQTKVSDLFNAYKFDLYISSFFNNALTVSN 380


>U40959-3|AAA81767.2|  445|Caenorhabditis elegans Hypothetical
           protein B0310.3 protein.
          Length = 445

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/53 (24%), Positives = 28/53 (52%)
 Frame = +1

Query: 124 RLLSVMEAADVTKDEENKSIDIVPNKLLTRYNKRRAHRDWETKPPGEIKKPYE 282
           ++L  +E  +     EN+   +V +    R N+++  ++ + +PP E  +PYE
Sbjct: 336 QILEKLEETEEKPQVENEKKVVVKHVQSARKNQKKGRKNRKVEPPKEEFEPYE 388


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,997,194
Number of Sequences: 27780
Number of extensions: 277156
Number of successful extensions: 805
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)