Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_P07
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC24B10.12 |||CGI121 family protein|Schizosaccharomyces pombe|...    27   2.3  
SPCC70.10 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||M...    26   5.4  
SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual    26   5.4  
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces...    25   7.2  
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|...    25   9.5  

>SPCC24B10.12 |||CGI121 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 174

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = -2

Query: 651 TDALKRDLYISTFETMFSSSRRRQFRPTTLSISSVHMNLRSRTTRRLNFERV-SIQNGWG 475
           T  +  ++ +S       SS  RQF  T  S + V + + S+ T    FER+  +  G  
Sbjct: 70  TKTIHSEVILSLSPKTEISSAFRQFSMTKKSKNIVVVKIDSKLTEEEEFERLDKLVEGNR 129

Query: 474 IELSRSHLRKTV 439
           +E S   L+K +
Sbjct: 130 VEFSDEELQKLI 141


>SPCC70.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 155

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +2

Query: 392 RGDPRIQLHVLTHPNMTVFRKCDLDNSIPQPF 487
           RG  R   HV+ HPN T     +L   +P P+
Sbjct: 84  RGSVRYT-HVMAHPNTTTTVSENLPEEVPPPY 114


>SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 533

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 464 DNSIPQPFWIETLSKFSRLVVLDLKFIC 547
           D SIP+PF I+TL K + L V  +   C
Sbjct: 17  DGSIPEPFKIKTLPKDTVLNVTKIPSEC 44


>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 609

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 416 HVLTHPNMTVFRKCDLDNSIPQPFWIETLSKFSRL 520
           ++L HP  T+      +  +PQPF I  ++K S L
Sbjct: 354 NLLNHPEGTMTNLLPPNMEMPQPFEIPVIAKTSAL 388


>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 512

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 105 KIMYKSTLLHIEINITN*NYFNKCRPLNN 191
           +++ KS +  IE N+T     +  +PLNN
Sbjct: 210 QLVLKSRICRIEYNVTKFELISVTKPLNN 238


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,516,877
Number of Sequences: 5004
Number of extensions: 49970
Number of successful extensions: 130
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)