Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_P07
         (652 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0270 - 13613853-13614153,13614233-13614403,13614486-136153...    33   0.26 
06_01_0289 - 2111768-2114377,2114970-2115025,2115272-2115323           30   1.4  

>06_02_0270 -
           13613853-13614153,13614233-13614403,13614486-13615318,
           13615401-13615746,13615940-13616127,13616238-13616408
          Length = 669

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
 Frame = -2

Query: 609 TMFSSSRRRQFRPTTLSISSVHMNLRSRTTRRLNFERVSIQNGWGIELSR---SHLRKTV 439
           T   +S RRQ+ P  +      M+L  R    LN E ++   G G++ +R   SHLR  V
Sbjct: 55  TEAGTSARRQYGPKKMQPLQQQMSL-PRFQTSLNKE-LATGCGQGVKSTRTALSHLRTKV 112

Query: 438 MLGCVNTWS*IRGSPRYWQH 379
           ML  +  W    GS   W+H
Sbjct: 113 MLSSIRNWG--IGSDVPWKH 130


>06_01_0289 - 2111768-2114377,2114970-2115025,2115272-2115323
          Length = 905

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
 Frame = +2

Query: 380 CCQYRGDPRIQLHVLTHPNMTVFRKCDLDN---SIPQPFWIETLSKFSRLVVLDL 535
           C  +   P   L+ L+H N T  R  DL +   S   P WI   SK S L  LDL
Sbjct: 226 CLNHAFLPATDLNALSHTNFTAIRVLDLKSNNFSSRMPDWI---SKLSSLAYLDL 277


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,082,699
Number of Sequences: 37544
Number of extensions: 290750
Number of successful extensions: 702
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)