Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_P07
         (652 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8500| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.4  
SB_1933| Best HMM Match : PI3_PI4_kinase (HMM E-Value=4.06377e-44)     30   1.4  
SB_54271| Best HMM Match : Patatin (HMM E-Value=7.2e-25)               29   2.5  
SB_14778| Best HMM Match : MH1 (HMM E-Value=2.8026e-45)                29   4.3  
SB_42810| Best HMM Match : Beach (HMM E-Value=0)                       28   5.7  
SB_18879| Best HMM Match : Pkinase_Tyr (HMM E-Value=7e-36)             28   5.7  
SB_6388| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.6  

>SB_8500| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3408

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
 Frame = +2

Query: 293  CEKKVYSLKCHLMTVLPCRLFDVLCSERTCCQYRGDPRIQLHVLTHPNMTVFRKCDLDNS 472
            CE ++ +++C L +V+P  +  VL       +  G P + L  L      V    D D  
Sbjct: 3245 CEARIAAVQCGLYSVVPLHVLAVLSPADLETRMCGIPTVDLDFLKAHTTYVAGIKDTDLH 3304

Query: 473  IPQPFWIETLSKFSRLVVLD-LKFICTDE 556
            I + FW   L  FS+  +   +KF C  E
Sbjct: 3305 I-EYFW-NALENFSQDQLRKFIKFACNQE 3331


>SB_1933| Best HMM Match : PI3_PI4_kinase (HMM E-Value=4.06377e-44)
          Length = 915

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +2

Query: 395 GDPRIQLHVLTHPNMTVFRKCDLDNSIPQPFWIETLSKFSRLVVLDLK 538
           GDP ++L++L  P+ T   K  +      P + ETL  +S L   DLK
Sbjct: 822 GDPYVKLYLLPDPSKTTKLKTKIAKKSQNPTYNETL-VYSNLSAADLK 868


>SB_54271| Best HMM Match : Patatin (HMM E-Value=7.2e-25)
          Length = 337

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -2

Query: 576 RPTTLSISSVHMNLRSRTTRRLNFERVSIQNGWGIELSRSHLRKT 442
           R  TL++  +H N R   T R +FE++  +N   +   R H+  T
Sbjct: 73  RARTLTLGPLHPNFRILQTLRRSFEKILPENAHELASGRLHISLT 117


>SB_14778| Best HMM Match : MH1 (HMM E-Value=2.8026e-45)
          Length = 1133

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -3

Query: 461  DRICGRLSCWDASTRGAEYEDRHGTGSMFVL 369
            DR  G    WDA+  GA   ++HG   M VL
Sbjct: 966  DRSMGAKDTWDANKHGAWDANKHGAAGMNVL 996


>SB_42810| Best HMM Match : Beach (HMM E-Value=0)
          Length = 667

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 10/24 (41%), Positives = 19/24 (79%)
 Frame = -3

Query: 203 IIFVVV*GATFVKIILVGYVNFNM 132
           I+ +V+  A +V+++ VG+VNF+M
Sbjct: 252 ILMLVLGNAAYVRLVAVGFVNFSM 275


>SB_18879| Best HMM Match : Pkinase_Tyr (HMM E-Value=7e-36)
          Length = 617

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
 Frame = +1

Query: 364 LFRTNMLPVPWRSSYSAPR--VDASQHDSLPQMRSR*LNTPTILDRNSLEIQSSCRSRPQ 537
           L ++  L V   SS S P   V +   ++ P  R     T T  D +S    S CR    
Sbjct: 80  LSKSEQLSVCDTSSSSQPNGWVRSDVINTRPATRIELTATFTARDCSSFSGGSYCRHDFD 139

Query: 538 IHMHRRNTQRSGPELSPS 591
           ++ H+  TQ SGP   P+
Sbjct: 140 VYAHQSETQYSGPVPDPN 157


>SB_6388| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1520

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = +1

Query: 418 RVDASQHDSLPQMRSR*LNTPTILDRNSLEIQSSCRSRPQIHMHRRNTQRSGP 576
           R  + Q  +  Q  S+  + P  + R  L+ Q S RS  Q HM  +NT+   P
Sbjct: 395 REQSQQEQTQKQTDSK--SKPLNMSRRDLQRQISPRSNYQTHMDGKNTKTKSP 445


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,307,254
Number of Sequences: 59808
Number of extensions: 371299
Number of successful extensions: 1080
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1076
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)