Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_P03
(654 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 31 0.19
SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyce... 29 0.77
SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7 |S... 28 1.0
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr... 28 1.4
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc... 27 3.1
SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 27 3.1
SPAP7G5.02c |gua2||GMP synthase [glutamine-hydrolyzing] |Schizos... 26 4.1
SPBC29A10.13 |atp7||F0-ATPase subunit D|Schizosaccharomyces pomb... 26 4.1
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa... 25 7.2
SPAC23H4.11c |cnl2||centromere localized protein Cnl2|Schizosacc... 25 9.5
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo... 25 9.5
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 25 9.5
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 25 9.5
>SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 419
Score = 30.7 bits (66), Expect = 0.19
Identities = 14/65 (21%), Positives = 31/65 (47%)
Frame = +2
Query: 341 KAXEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESQKLXKKVSSNV 520
KA + LE+ ++ E + EE+ H + T+ + + + +QE ++ K +
Sbjct: 353 KACKDLEEVSKSYEESREEIEALHETFTEEVTSFQSTKRLKEEKIIQEKSRVDKMIDEYR 412
Query: 521 QETNE 535
Q+ +E
Sbjct: 413 QKLSE 417
>SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 238
Score = 28.7 bits (61), Expect = 0.77
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Frame = +2
Query: 323 LGDANGKAXEALEQSRQNIERTAEELRKAHPD---VEKNATALREKLQAAVQNTVQESQK 493
+ +A KA ++LEQ+ + E L K H + E+ + +EKL A ++ + S++
Sbjct: 52 INEAQKKAEKSLEQTEARKQNFTELLEKEHEEQAITEQEIFSFQEKLDAMLKRKQKLSEE 111
Query: 494 L 496
L
Sbjct: 112 L 112
>SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 272
Score = 28.3 bits (60), Expect = 1.0
Identities = 17/69 (24%), Positives = 37/69 (53%)
Frame = +2
Query: 341 KAXEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESQKLXKKVSSNV 520
K+ + LE S Q +E E + P+V++ +EK ++ V+ +E +K+S N+
Sbjct: 132 KSEKPLETS-QKVEIETVETKPGEPEVKQETNLQKEKKESKVKLESKE-----EKISRNL 185
Query: 521 QETNEKLAP 547
+ ++ ++P
Sbjct: 186 RSSSRSISP 194
>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 27.9 bits (59), Expect = 1.4
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Frame = +2
Query: 362 QSRQNIERTAEELRKAHPDVEKNATALREKLQAAV-----QNTVQESQKLXKKVSSNVQE 526
Q ++ +ER E LRK D K+ + +AA+ + + E QKL K +
Sbjct: 138 QGKEKLEREVENLRK-ELDKYKDLVETEAEKRAAITKEECEKSWLEQQKLYKDMEQENAS 196
Query: 527 TNEKLAPKI 553
T +KL KI
Sbjct: 197 TIQKLTSKI 205
>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 762
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -3
Query: 394 LGRALDVLPRLFQSLXGLAVRVSERCPGDSW 302
+G + L RLF SL GL ++ PG+ W
Sbjct: 410 VGTVIQGLSRLFSSLYGLRFVPADISPGEVW 440
>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 642
Score = 26.6 bits (56), Expect = 3.1
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 344 AXEALEQSRQNIERTAEELRK-AHPDVEKNATALRE 448
A E +++ +IER+A K A + E+ ATALRE
Sbjct: 157 ASERAREAQSSIERSASLREKQAREEAERAATALRE 192
>SPAP7G5.02c |gua2||GMP synthase [glutamine-hydrolyzing]
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 26.2 bits (55), Expect = 4.1
Identities = 19/79 (24%), Positives = 31/79 (39%)
Frame = -2
Query: 344 PCRSRLRALPWRLLAKALSCCSTDSEPSFQALLKSCASFDLVSELNCCC*SLMELPWCGV 165
PC ++ ALP++ + LS + A F+L + C + E+ W
Sbjct: 49 PCTQKIEALPFKPIGVILSGGPYSVYDDIAPHVDP-AVFELGVPVLGICYGMQEIAWLNG 107
Query: 164 RCP*RSRERRVAPSLLGPE 108
RC ER P+ + E
Sbjct: 108 RCVEPGIEREYGPATVSME 126
>SPBC29A10.13 |atp7||F0-ATPase subunit D|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 175
Score = 26.2 bits (55), Expect = 4.1
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +2
Query: 356 LEQSRQNIERTAEELRKAHPDVEK 427
+EQ+R E T E++++A P++EK
Sbjct: 126 IEQARPTEEITIEDMKQAVPEIEK 149
>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 548
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +2
Query: 398 LRKAHPDVEKNATALREKLQAAVQNTVQE 484
L AH D+E T++RE+L++ + +E
Sbjct: 267 LDSAHSDLELELTSIRERLESLILEKQEE 295
>SPAC23H4.11c |cnl2||centromere localized protein
Cnl2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 188
Score = 25.0 bits (52), Expect = 9.5
Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Frame = +2
Query: 356 LEQSRQNIERTAEELRKAHPD--VEKNATALREKLQAAVQNTVQESQKLXKKVSSNVQET 529
L + R NI ++ + K+ D + N L+ A+ + V+E ++ E
Sbjct: 56 LAKLRANIHLESQVIGKSRIDRMLATNVEKLQTVSHASTLHDVEEFYTSHSAKPLDISEI 115
Query: 530 NEKLAPKIXAAY 565
NE+L+ + +AY
Sbjct: 116 NERLSEAVQSAY 127
>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
transporter Bfr1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1530
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -1
Query: 450 FSRRAVAFFSTSGWALRSSSAVRSMF 373
FSR V FFS AL+S S + +MF
Sbjct: 570 FSRGGVLFFSILFCALQSLSEIANMF 595
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 25.0 bits (52), Expect = 9.5
Identities = 17/73 (23%), Positives = 37/73 (50%)
Frame = +2
Query: 356 LEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESQKLXKKVSSNVQETNE 535
++ Q+IE T L K D+E++ +++ + V + Q+ ++++ +Q+T E
Sbjct: 496 MKTQEQSIELT--RLYKQLQDIEEDYENKLMRMEQQWREDVDQLQEYVEEITQELQDTKE 553
Query: 536 KLAPKIXAAYDDF 574
L+ K DD+
Sbjct: 554 VLS-KSSKESDDY 565
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 25.0 bits (52), Expect = 9.5
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +2
Query: 311 SRAALGDANGKAXEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQE-S 487
+RAA +AN + E E ++ IE R+A ++ E+ + Q +E S
Sbjct: 798 ARAAEEEANRELHEQEEAQKRAIEERTRAAREAKEREQREMAEKLERQRRIQQERDEEIS 857
Query: 488 QKLXKKVSS 514
+KL +K ++
Sbjct: 858 RKLAEKAAA 866
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,681,342
Number of Sequences: 5004
Number of extensions: 26109
Number of successful extensions: 139
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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