Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_P02
         (653 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46563| Best HMM Match : No HMM Matches (HMM E-Value=.)              62   4e-10
SB_52816| Best HMM Match : No HMM Matches (HMM E-Value=.)              58   8e-09
SB_23832| Best HMM Match : No HMM Matches (HMM E-Value=.)              44   8e-05
SB_23673| Best HMM Match : DUF855 (HMM E-Value=0.52)                   35   0.050
SB_29686| Best HMM Match : Mit_preoteolip (HMM E-Value=6.3)            33   0.20 
SB_39029| Best HMM Match : ig (HMM E-Value=6e-10)                      31   0.82 
SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_55800| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_39161| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_42709| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   2.8  
SB_19823| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_9710| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.3  
SB_6783| Best HMM Match : Porphobil_deamC (HMM E-Value=5.8)            29   3.3  
SB_28947| Best HMM Match : Sugar_tr (HMM E-Value=2.1e-06)              28   5.8  
SB_8278| Best HMM Match : MTS (HMM E-Value=4e-07)                      28   5.8  
SB_7201| Best HMM Match : ketoacyl-synt (HMM E-Value=0)                28   5.8  
SB_31304| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_46563| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 50

 Score = 62.1 bits (144), Expect = 4e-10
 Identities = 29/50 (58%), Positives = 36/50 (72%)
 Frame = +3

Query: 180 NQKYSKALKLAIXKMHNDGKKANVLDIGTGTGLLSIMAAKSGADTIVACE 329
           N+KY  A   AI +M    +   +LDIGTGTGLL++MAAKSGADT+ ACE
Sbjct: 1   NKKYYSATVDAIKRMKASNRSVKMLDIGTGTGLLAMMAAKSGADTVTACE 50


>SB_52816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1622

 Score = 57.6 bits (133), Expect = 8e-09
 Identities = 45/162 (27%), Positives = 80/162 (49%), Gaps = 2/162 (1%)
 Frame = +3

Query: 111 EDNDYHQEIAR-SAFADMLHDTERNQKYSKALKLAIXKMHNDGKKANVLDIGTGTGLLSI 287
           +D++Y  +        +ML D  R + Y    ++AI +     K   VLD+G GTG+LS+
Sbjct: 112 QDDEYFADYGSLKIHLEMLKDKPRTESY----RMAIEQGAGYFKDKVVLDVGCGTGILSL 167

Query: 288 MAAKSG-ADTIVACEAFQPMAECCLRILECNGVADKVTVIPKRSTELTVGENGDMKQKAN 464
             A+ G A  + A EA + +A+    I++ N + DK+TVI  +  E+      ++ +K +
Sbjct: 168 FCAREGKASKVYAVEASE-IAKLTEEIIKQNNLDDKITVIQGKIEEV------ELPEKVD 220

Query: 465 ILVTEXFDTELIGEGALSTFSHAHKFLLQQXAIXVPDSXVIY 590
           I+V+E   T L+ E  L +   A    L+   +  P    ++
Sbjct: 221 IIVSEWMGTFLVFEFMLESVLTARDIWLKPNGLVWPSEAKLF 262


>SB_23832| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 706

 Score = 44.4 bits (100), Expect = 8e-05
 Identities = 24/56 (42%), Positives = 37/56 (66%)
 Frame = +3

Query: 159 MLHDTERNQKYSKALKLAIXKMHNDGKKANVLDIGTGTGLLSIMAAKSGADTIVAC 326
           ML+D +RN  Y KA+  A+    ++G    VLDIG+G+G+LS+ A ++GA  + AC
Sbjct: 140 MLNDRQRNLAYKKAISNAV----SNGCDI-VLDIGSGSGILSMFAVQAGAKKVYAC 190


>SB_23673| Best HMM Match : DUF855 (HMM E-Value=0.52)
          Length = 380

 Score = 35.1 bits (77), Expect = 0.050
 Identities = 15/25 (60%), Positives = 20/25 (80%)
 Frame = +3

Query: 249 VLDIGTGTGLLSIMAAKSGADTIVA 323
           VLD+G GTG+LS+ AAK+GA  + A
Sbjct: 188 VLDVGCGTGILSMFAAKAGAKHVYA 212


>SB_29686| Best HMM Match : Mit_preoteolip (HMM E-Value=6.3)
          Length = 59

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 18/55 (32%), Positives = 30/55 (54%)
 Frame = +3

Query: 168 DTERNQKYSKALKLAIXKMHNDGKKANVLDIGTGTGLLSIMAAKSGADTIVACEA 332
           D+ R   Y +A+   +     D +   V+D+G G+G+LS  A ++GA  + A EA
Sbjct: 1   DSIRTSTYQRAMLQNVA----DFQDKVVIDVGAGSGILSFFAIQAGARKVYAIEA 51


>SB_39029| Best HMM Match : ig (HMM E-Value=6e-10)
          Length = 439

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +3

Query: 408 KRSTELTVGENGDMKQKANILVTEXFDTELIGEGALSTFSHAHKFLLQQ 554
           K + +L V E G + Q +N+L ++  +   IG   L   SH+  F +Q+
Sbjct: 49  KENYKLEVFEQGQILQNSNVLKSDAGNYTCIGSNPLGNASHSFYFTVQE 97


>SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1913

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +3

Query: 372 CNGVADKVTVIPKRSTELTVGENGDMKQKANILVTEXFDTELIGEG 509
           C  + DK TVI        V E    K+KANIL+      +++G+G
Sbjct: 309 CLVIQDKSTVISVEVVRSFVNEVSSQKEKANILIPGADMKKMLGDG 354


>SB_55800| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 85

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +3

Query: 51  KVFTQKRNPLTGCTEWDMQDEDNDYHQE 134
           KV      PLT C +WD   +  D HQE
Sbjct: 27  KVLIPLALPLTDCAQWDSMSKTTDSHQE 54


>SB_39161| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2103

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = +3

Query: 18   KSCVSRIGSKMKVFTQKRNPLTGCTEWDMQDEDNDYHQEIARSAFADMLHDTERN 182
            +SC+S       V  +KR  L G   WDM ++  D  +  A     D + D+ R+
Sbjct: 1666 QSCLSHCYETAIVMPRKRIRLNGIPRWDMLEDRVDGRRVFAAGESRDEMIDSSRS 1720


>SB_42709| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1616

 Score = 26.2 bits (55), Expect(2) = 2.8
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +3

Query: 99  DMQDEDNDYHQEIARSAFADMLHDTERNQKYSKALKLAIXKMHNDGKKA 245
           + +DE  D  QEI   +  D L+ T+ +  Y K  KL I   +  G  A
Sbjct: 847 EAEDEIEDIQQEITVLSQCDSLYVTKYHGSYLKGTKLWIIMEYLGGGSA 895



 Score = 21.4 bits (43), Expect(2) = 2.8
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3

Query: 219 KMHNDGKKANVLDIGTG 269
           K+H D K ANVL   TG
Sbjct: 928 KLHRDIKAANVLMSETG 944


>SB_19823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 940

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
 Frame = +3

Query: 156 DMLHDTERNQKYSKALKLAIXKMHNDGKKANVLDIGTGT-GLLSIMAAKSGADTIVACEA 332
           D+    E + K + A+  AI K+    K+  VLD G+G  G    +AA +G   +VA E 
Sbjct: 41  DVCKVDEWHYKGTAAVDDAI-KILRINKEHTVLDFGSGLGGPARHLAANTGCH-VVALEL 98

Query: 333 FQPMAECCLRILECNGVADKV 395
            + M E  + + +  G++DKV
Sbjct: 99  QEDMHESAIDLTKRCGLSDKV 119


>SB_9710| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 103

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
 Frame = -1

Query: 371 FQYPETAFSHRLKSLTSNNSVST*FCCHYGEEPCTC---ANIQDIGFLSIIVHFXNSQFQ 201
           F  P T +      +  NN  S      Y ++ C     AN ++    ++ VHF    F 
Sbjct: 25  FAEPYTYYQSNASCIIFNNDSSR--SSRYNDDICCLRPTANHREWRKKTVFVHFQGQDFD 82

Query: 200 SLAIFLVPLSIMQHI 156
           +LA+F   + ++ H+
Sbjct: 83  ALAVFRTLIRMLTHV 97


>SB_6783| Best HMM Match : Porphobil_deamC (HMM E-Value=5.8)
          Length = 382

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = +3

Query: 246 NVLDIGTGTGLLSIMAAKSGADTIVACEAFQPMAECCLRI 365
           NVLD+  GTG+ SIM  ++G   + + +A   M +  LRI
Sbjct: 209 NVLDVSCGTGVDSIMLLENGF-CVTSVDASDKMLKDALRI 247


>SB_28947| Best HMM Match : Sugar_tr (HMM E-Value=2.1e-06)
          Length = 624

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/44 (36%), Positives = 26/44 (59%)
 Frame = -2

Query: 457 FCFISPFSPTVSSVDLFGITVTLSATPLHSNILRQHSAIG*KAS 326
           + F S   PT+ S  L+G+T T+S+  LH ++L +  +   KAS
Sbjct: 409 YLFTSELYPTILSALLYGLTETISSR-LHVHVLLKFRSGNKKAS 451


>SB_8278| Best HMM Match : MTS (HMM E-Value=4e-07)
          Length = 254

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
 Frame = +3

Query: 171 TERNQKYSKALKLAIXKMHNDGKKAN---VLDIGTGTGLLSIMAA 296
           TE+   +S    L +     D K      +L+IG GTGL SIMAA
Sbjct: 47  TEQGAAFSTTELLRVLAEEMDKKPGEAFALLEIGCGTGLTSIMAA 91


>SB_7201| Best HMM Match : ketoacyl-synt (HMM E-Value=0)
          Length = 1821

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
 Frame = +3

Query: 198  ALKLAIXKMHNDGKKANVLDIGTGTGLLSIMAA------KSGADTIVACEAFQPMAECCL 359
            A+K ++  + +DGK     +  TG  +LS  ++      +     +   E+F+ M   C 
Sbjct: 1484 AMKRSLSSLKHDGKLVVACEDFTGQAILSGRSSICYDRIRPSELLMGTNESFEEMWLSCQ 1543

Query: 360  RILECNGVADKVTVIPKRSTEL 425
             +L   GV  K+ V+P+ +T +
Sbjct: 1544 SMLMRTGVLQKLLVVPQETTSV 1565


>SB_31304| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 379

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/40 (30%), Positives = 25/40 (62%)
 Frame = +3

Query: 93  EWDMQDEDNDYHQEIARSAFADMLHDTERNQKYSKALKLA 212
           EW ++ + N+ +Q+ A  ++AD L+D +  +   +A +LA
Sbjct: 162 EW-VKQQSNEKNQDKANQSYADYLYDLKARELDQRACELA 200


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,906,104
Number of Sequences: 59808
Number of extensions: 375630
Number of successful extensions: 840
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)