Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_O24
(557 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch... 144 6e-36
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc... 144 6e-36
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual 29 0.35
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 28 0.81
SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit L1... 27 2.5
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz... 26 3.3
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|... 25 5.7
SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase |Schizosacch... 25 5.7
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|... 25 5.7
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 25 5.7
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo... 25 10.0
>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 221
Score = 144 bits (350), Expect = 6e-36
Identities = 66/94 (70%), Positives = 73/94 (77%)
Frame = +1
Query: 40 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 219
M RRPARCYRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ+
Sbjct: 1 MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQI 60
Query: 220 SSXALEAGRICCNKYLAKXLRKGSVPYPHETSPF 321
+S ALEA RIC NKYL K K S PF
Sbjct: 61 TSEALEAARICANKYLVKIGGKDSFHLRVRAHPF 94
Score = 132 bits (318), Expect = 4e-32
Identities = 60/85 (70%), Positives = 70/85 (82%)
Frame = +2
Query: 281 GKDQFHIRMRLHPFHVIRINKMLSCAGADXLXTGMRGAFGKPXGTVARVRIGQPIMSVRS 460
GKD FH+R+R HPFHV+RINKMLSCAGAD L TGMR AFGKP G VARV IGQ +MSVR+
Sbjct: 81 GKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQVLMSVRT 140
Query: 461 TDRWKAQVIEALRRAKFKFPGRQKI 535
D +A IEALRR ++KFPG+Q+I
Sbjct: 141 KDSSRATAIEALRRCQYKFPGQQRI 165
>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 221
Score = 144 bits (350), Expect = 6e-36
Identities = 66/94 (70%), Positives = 73/94 (77%)
Frame = +1
Query: 40 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 219
M RRPARCYRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ+
Sbjct: 1 MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQI 60
Query: 220 SSXALEAGRICCNKYLAKXLRKGSVPYPHETSPF 321
+S ALEA RIC NKYL K K S PF
Sbjct: 61 TSEALEAARICANKYLVKIGGKDSFHLRVRAHPF 94
Score = 131 bits (317), Expect = 6e-32
Identities = 60/85 (70%), Positives = 70/85 (82%)
Frame = +2
Query: 281 GKDQFHIRMRLHPFHVIRINKMLSCAGADXLXTGMRGAFGKPXGTVARVRIGQPIMSVRS 460
GKD FH+R+R HPFHV+RINKMLSCAGAD L TGMR AFGKP G VARV IGQ +MSVR+
Sbjct: 81 GKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQILMSVRT 140
Query: 461 TDRWKAQVIEALRRAKFKFPGRQKI 535
D +A IEALRR ++KFPG+Q+I
Sbjct: 141 KDSSRATAIEALRRCQYKFPGQQRI 165
>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 405
Score = 29.5 bits (63), Expect = 0.35
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +1
Query: 64 YRYCKNKPYPKSRFCRGVPDP-KIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSXALEA 240
Y+ N ++FC V + KI + +KRA +D LC+ +S + E ++ +LE+
Sbjct: 34 YQKVPNSHKEFTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLES 93
Query: 241 G 243
G
Sbjct: 94 G 94
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 28.3 bits (60), Expect = 0.81
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +1
Query: 121 DPKIRIFDLGKKRATVDDFPLCV-HLVSDEYEQLSSXALEA 240
DPK+R+F KRAT + C LV+ + + S +++A
Sbjct: 320 DPKLRVFPFTTKRATHSELLRCYKELVTPKISHVDSISIKA 360
>SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit
L16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 215
Score = 26.6 bits (56), Expect = 2.5
Identities = 20/79 (25%), Positives = 29/79 (36%), Gaps = 4/79 (5%)
Frame = +2
Query: 311 LHPFHVIRINKMLSCAGADXLXTGMRGAFGKPXGT----VARVRIGQPIMSVRSTDRWKA 478
L P R+ C G GK G AR+ IG+ + + K
Sbjct: 100 LKPIKAARVYTRF-CCNVPVCVKGNETRMGKGKGAFEYWAARIPIGRVLFEIGGDGMRKE 158
Query: 479 QVIEALRRAKFKFPGRQKI 535
AL++A F PG+ +I
Sbjct: 159 LAEHALKQAAFHLPGKYEI 177
>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 26.2 bits (55), Expect = 3.3
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +2
Query: 155 RERPLTTFHCACTWCPTNMNS 217
R RP +T H +CT+C + S
Sbjct: 459 RSRPDSTSHASCTYCVARLRS 479
>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1234
Score = 25.4 bits (53), Expect = 5.7
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = -3
Query: 240 CLQSL*AQLFIFVGHQVHAQWKVVNGRSLLTQIEDTDLG 124
CL L L + H++ ++W+ +N R LL + + + G
Sbjct: 940 CLLPLLPALLSELDHKLVSEWRRINDRGLLVEEDAEETG 978
>SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 474
Score = 25.4 bits (53), Expect = 5.7
Identities = 9/16 (56%), Positives = 14/16 (87%)
Frame = -1
Query: 290 DPFRSXLARYLLQQIR 243
DPFR+ +RY+LQ+I+
Sbjct: 361 DPFRAVQSRYILQEIQ 376
>SPAC3A12.05c |taf2||TATA-binding protein associated factor
Taf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1174
Score = 25.4 bits (53), Expect = 5.7
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +2
Query: 107 VGVYLIPRSVSSIWV 151
+GVYLIP++ S +W+
Sbjct: 394 IGVYLIPKAWSDLWL 408
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.4 bits (53), Expect = 5.7
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 142 DLGKKRATVDDFPLCVHLVSDEYEQL 219
++ KKRA DD + +VS EYE L
Sbjct: 1033 EIEKKRAENDDLQSKLSVVSSEYENL 1058
>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
Swi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 24.6 bits (51), Expect = 10.0
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = +1
Query: 97 SRFCRGVPDPKIRIFDLGKKRATVDDFP-LCVHLVSDE 207
S FC PDPK K A DD P + H+ S++
Sbjct: 84 SFFCTTTPDPKTESPSFVKYNAHCDDHPEISGHVSSND 121
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,378,504
Number of Sequences: 5004
Number of extensions: 48210
Number of successful extensions: 157
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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