Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_O24
         (557 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47652| Best HMM Match : Ribosomal_L10e (HMM E-Value=0.0041)         81   6e-16
SB_56325| Best HMM Match : Ribosomal_L14e (HMM E-Value=0.84)           31   0.64 
SB_12964| Best HMM Match : RVT_1 (HMM E-Value=5.6e-31)                 31   0.64 
SB_57196| Best HMM Match : ADAM_spacer1 (HMM E-Value=3.1e-31)          29   1.9  
SB_28115| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_34832| Best HMM Match : SAP (HMM E-Value=1.4e-07)                   28   5.9  
SB_53724| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_47942| Best HMM Match : TSP_1 (HMM E-Value=0)                       27   7.9  
SB_11547| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.22)           27   7.9  
SB_3783| Best HMM Match : fn3 (HMM E-Value=1.5e-12)                    27   7.9  

>SB_47652| Best HMM Match : Ribosomal_L10e (HMM E-Value=0.0041)
          Length = 50

 Score = 81.0 bits (191), Expect = 6e-16
 Identities = 39/50 (78%), Positives = 42/50 (84%)
 Frame = +2

Query: 383 MRGAFGKPXGTVARVRIGQPIMSVRSTDRWKAQVIEALRRAKFKFPGRQK 532
           MRGAFGKP GTVARV IGQ I+S+R+ D  KA  IEALRRAKFKFPGRQK
Sbjct: 1   MRGAFGKPQGTVARVNIGQTIISIRTKDGNKAAAIEALRRAKFKFPGRQK 50


>SB_56325| Best HMM Match : Ribosomal_L14e (HMM E-Value=0.84)
          Length = 650

 Score = 31.1 bits (67), Expect = 0.64
 Identities = 18/47 (38%), Positives = 25/47 (53%)
 Frame = -1

Query: 272 LARYLLQQIRPASKAXELSCSYSSDTKCTHSGKSSTVALFLPKSKIR 132
           LA Y+++QI+ ASK   L     + T C  + K S V  F+ K K R
Sbjct: 249 LAGYIVKQIQVASKVKVLKAKLENQTLCQQT-KRSKVTDFISKQKSR 294


>SB_12964| Best HMM Match : RVT_1 (HMM E-Value=5.6e-31)
          Length = 1273

 Score = 31.1 bits (67), Expect = 0.64
 Identities = 18/47 (38%), Positives = 25/47 (53%)
 Frame = -1

Query: 272  LARYLLQQIRPASKAXELSCSYSSDTKCTHSGKSSTVALFLPKSKIR 132
            LA Y+++QI+ ASK   L     + T C  + K S V  F+ K K R
Sbjct: 1017 LAGYIVKQIQVASKVKVLKAKLENQTLCQQT-KRSKVTDFISKQKSR 1062


>SB_57196| Best HMM Match : ADAM_spacer1 (HMM E-Value=3.1e-31)
          Length = 718

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +2

Query: 44  GAGQRDATGTAKINRIRNRGSVGVYLIPRSVSSIWVRRERPLTTF 178
           G G    T     N++  +G V   LIP+   +I VR  +P T+F
Sbjct: 313 GNGTACYTVEGSFNQLAGKGYVEAALIPKGARNIRVREVKPCTSF 357


>SB_28115| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 698

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -2

Query: 235 PKPXSSAVHIRRTPSARTVESRQRSLSSYPNRRYGSWDQ 119
           PK  SS V+  RT  AR    ++R++  Y  ++YG W Q
Sbjct: 295 PKFFSSIVYYGRT--ARFDYGKRRNMKRYGKKKYGKWRQ 331


>SB_34832| Best HMM Match : SAP (HMM E-Value=1.4e-07)
          Length = 1054

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = +1

Query: 16  WCHFVKITMGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRAT 165
           W   ++I++  R    +R        K+RF + VP+P+I+    G+  +T
Sbjct: 137 WIDLLRISLNLRGNSVFRRSNKGEKEKARFKKSVPEPRIQPDSQGQVGST 186


>SB_53724| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1005

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/24 (54%), Positives = 18/24 (75%)
 Frame = -2

Query: 502 TAQSLDDLCLPPVSRAHGHDGLSN 431
           TA ++D  C+P +SRA G DGLS+
Sbjct: 104 TAFAVD--CIPRISRAQGFDGLSS 125


>SB_47942| Best HMM Match : TSP_1 (HMM E-Value=0)
          Length = 2195

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +2

Query: 233  WRQDVSAAISTSLXNCGKDQFHIRM--RLHPFHVIRINKM 346
            +RQ++S  +   L NC K    +R+  R   +H+IR+ +M
Sbjct: 1996 FRQEMSLVVRIFLHNCEKKMAEMRIKHRKELYHLIRLKRM 2035


>SB_11547| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.22)
          Length = 432

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = +2

Query: 230 LWRQDVSAAISTSLXNCGKDQFHIRMRLHPFHVIRINKMLSCA 358
           +W QD S+A+STSL       FH   ++HP H   + K  S A
Sbjct: 69  VW-QDTSSALSTSLERYIIRTFHQSGKIHPPHFPPVWKDTSSA 110


>SB_3783| Best HMM Match : fn3 (HMM E-Value=1.5e-12)
          Length = 165

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = +1

Query: 175 FPLCV---HLVSDEYEQLSSXALEAGRICCNKYLAKXLRKGSVPYPHETSPFPR 327
           +P+C+   +  S +Y  L+S   +   +C N+Y    +R+G+  Y    + FPR
Sbjct: 105 YPVCMNEYYTYSQQYTLLTSRMYQYP-VCMNEYSQGLIRRGNHLYHVSVTAFPR 157


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,933,829
Number of Sequences: 59808
Number of extensions: 414219
Number of successful extensions: 1227
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1083
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1226
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)