Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_O24
         (557 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical pr...   141   3e-34
AF045641-2|AAC02578.2| 1370|Caenorhabditis elegans Hypothetical ...    28   4.0  
Z81055-1|CAB02889.1|  618|Caenorhabditis elegans Hypothetical pr...    28   5.2  
AF099919-10|AAC68792.1|  205|Caenorhabditis elegans Max-like pro...    28   5.2  
U50199-4|AAA91264.2|  142|Caenorhabditis elegans Abnormal cell l...    27   6.9  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    27   6.9  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    27   6.9  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    27   6.9  
U80442-4|AAB37667.1|  226|Caenorhabditis elegans Hypothetical pr...    27   9.1  
AL021488-11|CAN86609.1| 1245|Caenorhabditis elegans Hypothetical...    27   9.1  
AL021488-10|CAA16368.2| 1247|Caenorhabditis elegans Hypothetical...    27   9.1  
AL021488-9|CAC42378.2| 1245|Caenorhabditis elegans Hypothetical ...    27   9.1  
AL021483-11|CAN86637.1| 1245|Caenorhabditis elegans Hypothetical...    27   9.1  
AL021483-10|CAA16349.2| 1247|Caenorhabditis elegans Hypothetical...    27   9.1  
AL021483-9|CAC42374.2| 1245|Caenorhabditis elegans Hypothetical ...    27   9.1  

>Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical
           protein F10B5.1 protein.
          Length = 214

 Score =  141 bits (342), Expect = 3e-34
 Identities = 65/94 (69%), Positives = 69/94 (73%)
 Frame = +1

Query: 40  MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 219
           MGRRPARCYRY KNKPYPKSRFCRGVPD KIRIFDLG KRA VD FP CVH++S+E E L
Sbjct: 1   MGRRPARCYRYIKNKPYPKSRFCRGVPDAKIRIFDLGNKRANVDTFPACVHMMSNEREHL 60

Query: 220 SSXALEAGRICCNKYLAKXLRKGSVPYPHETSPF 321
           SS ALEA RIC NKY+ K   K          PF
Sbjct: 61  SSEALEAARICANKYMVKNCGKDGFHLRVRKHPF 94



 Score =  126 bits (304), Expect = 1e-29
 Identities = 60/87 (68%), Positives = 66/87 (75%)
 Frame = +2

Query: 275 NCGKDQFHIRMRLHPFHVIRINKMLSCAGADXLXTGMRGAFGKPXGTVARVRIGQPIMSV 454
           NCGKD FH+R+R HPFHV RINKMLSCAGAD L TGMRGA+GKP G VARV IG  + S+
Sbjct: 79  NCGKDGFHLRVRKHPFHVTRINKMLSCAGADRLQTGMRGAYGKPQGLVARVDIGDILFSM 138

Query: 455 RSTDRWKAQVIEALRRAKFKFPGRQKI 535
           R  +      IEA RRAKFKFPGRQ I
Sbjct: 139 RIKEGNVKHAIEAFRRAKFKFPGRQII 165


>AF045641-2|AAC02578.2| 1370|Caenorhabditis elegans Hypothetical
           protein F53H1.4a protein.
          Length = 1370

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 13/59 (22%), Positives = 27/59 (45%)
 Frame = +2

Query: 128 RSVSSIWVRRERPLTTFHCACTWCPTNMNS*AXRLWRQDVSAAISTSLXNCGKDQFHIR 304
           + +   W RR+  L  ++ AC+WC  N++      +   +       L +  KD+ H++
Sbjct: 335 KKMEDAWKRRD--LELYNEACSWCEKNLSGNQRSTFENPIFKFSVQKLVDKAKDRAHMK 391


>Z81055-1|CAB02889.1|  618|Caenorhabditis elegans Hypothetical
           protein F01G10.1 protein.
          Length = 618

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = +2

Query: 386 RGAFGKPXGTVARVRIGQPIMSVRSTDRWKAQVIE--ALRRAKFKFPGRQK 532
           R   GKP   +A+   G+ I  + + D W  + +    +   K +F G QK
Sbjct: 228 RSTKGKPTAIIAKTLKGKGIEGIENEDNWHGKPVPEGTVNAIKARFHGSQK 278


>AF099919-10|AAC68792.1|  205|Caenorhabditis elegans Max-like
           protein 2 protein.
          Length = 205

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +1

Query: 100 RFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSXALEAGR 246
           R C  +   K  I D  K+ A ++     + +++ EYEQ++S   +AG+
Sbjct: 93  RACDFMSQLKTDISDADKQLAQLNAQAAALEMIASEYEQMASSVPDAGQ 141


>U50199-4|AAA91264.2|  142|Caenorhabditis elegans Abnormal cell
           lineage protein 32 protein.
          Length = 142

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 426 FALDSPSCPCALLTGGRHRSSRLCAVPSSSSPDVKR 533
           F+LDSP+ P +L  GG     + C    + SP + R
Sbjct: 36  FSLDSPNYPDSLSNGGGKDDKKKCRRYKTPSPQLLR 71


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -3

Query: 162 RSLLTQIED--TDLGIRYTPTEPRFRIRFIFAVPVA 61
           RS +  IE   +D+ +  TP +P+   +F+F VPVA
Sbjct: 593 RSYMKLIETAISDILLHRTPIDPQADYKFVFEVPVA 628


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -3

Query: 162 RSLLTQIED--TDLGIRYTPTEPRFRIRFIFAVPVA 61
           RS +  IE   +D+ +  TP +P+   +F+F VPVA
Sbjct: 593 RSYMKLIETAISDILLHRTPIDPQADYKFVFEVPVA 628


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -3

Query: 162 RSLLTQIED--TDLGIRYTPTEPRFRIRFIFAVPVA 61
           RS +  IE   +D+ +  TP +P+   +F+F VPVA
Sbjct: 176 RSYMKLIETAISDILLHRTPIDPQADYKFVFEVPVA 211


>U80442-4|AAB37667.1|  226|Caenorhabditis elegans Hypothetical
           protein T20F5.5 protein.
          Length = 226

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = -1

Query: 320 KGEVSCGYGTD--PFRSXLARYLLQQIRPASKAXELSCSYSSDTKCTHSGKSST 165
           K +VS GY  D  P +S   +  +   + ASK   +    S DT+ T S  S T
Sbjct: 39  KSKVSSGYEKDVLPSKSMKMKVSISPDKSASKKLRVPSKESEDTQPTKSDASQT 92


>AL021488-11|CAN86609.1| 1245|Caenorhabditis elegans Hypothetical
            protein Y45F10A.6c protein.
          Length = 1245

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 468  LSVERTDMMGCPMRTRATVP*GLPNAPRIP 379
            L++E TD++G P RT+A +     N+  IP
Sbjct: 962  LAIEATDLLGTPKRTQAQLQERRSNSVDIP 991


>AL021488-10|CAA16368.2| 1247|Caenorhabditis elegans Hypothetical
            protein Y45F10A.6a protein.
          Length = 1247

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 468  LSVERTDMMGCPMRTRATVP*GLPNAPRIP 379
            L++E TD++G P RT+A +     N+  IP
Sbjct: 962  LAIEATDLLGTPKRTQAQLQERRSNSVDIP 991


>AL021488-9|CAC42378.2| 1245|Caenorhabditis elegans Hypothetical
            protein Y45F10A.6b protein.
          Length = 1245

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 468  LSVERTDMMGCPMRTRATVP*GLPNAPRIP 379
            L++E TD++G P RT+A +     N+  IP
Sbjct: 962  LAIEATDLLGTPKRTQAQLQERRSNSVDIP 991


>AL021483-11|CAN86637.1| 1245|Caenorhabditis elegans Hypothetical
            protein Y45F10A.6c protein.
          Length = 1245

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 468  LSVERTDMMGCPMRTRATVP*GLPNAPRIP 379
            L++E TD++G P RT+A +     N+  IP
Sbjct: 962  LAIEATDLLGTPKRTQAQLQERRSNSVDIP 991


>AL021483-10|CAA16349.2| 1247|Caenorhabditis elegans Hypothetical
            protein Y45F10A.6a protein.
          Length = 1247

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 468  LSVERTDMMGCPMRTRATVP*GLPNAPRIP 379
            L++E TD++G P RT+A +     N+  IP
Sbjct: 962  LAIEATDLLGTPKRTQAQLQERRSNSVDIP 991


>AL021483-9|CAC42374.2| 1245|Caenorhabditis elegans Hypothetical
            protein Y45F10A.6b protein.
          Length = 1245

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 468  LSVERTDMMGCPMRTRATVP*GLPNAPRIP 379
            L++E TD++G P RT+A +     N+  IP
Sbjct: 962  LAIEATDLLGTPKRTQAQLQERRSNSVDIP 991


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,513,376
Number of Sequences: 27780
Number of extensions: 288558
Number of successful extensions: 782
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)