Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_O24
(557 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C) cont... 133 7e-32
At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) / Wi... 133 7e-32
At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Near... 133 9e-32
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 27 6.4
At1g53180.1 68414.m06027 expressed protein 27 8.5
>At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C)
contains Pfam profile: PF00826: Ribosomal L10
Length = 221
Score = 133 bits (322), Expect = 7e-32
Identities = 61/94 (64%), Positives = 68/94 (72%)
Frame = +1
Query: 40 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 219
MGRRPARCYR K KPYPKSR+CRGVPDPKIRI+D+G KR VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60
Query: 220 SSXALEAGRICCNKYLAKXLRKGSVPYPHETSPF 321
SS ALEA RI CNKY+ K K + PF
Sbjct: 61 SSEALEAARIACNKYMVKSAGKDAFHLRIRVHPF 94
Score = 132 bits (320), Expect = 1e-31
Identities = 62/87 (71%), Positives = 69/87 (79%)
Frame = +2
Query: 275 NCGKDQFHIRMRLHPFHVIRINKMLSCAGADXLXTGMRGAFGKPXGTVARVRIGQPIMSV 454
+ GKD FH+R+R+HPFHV+RINKMLSCAGAD L TGMRGAFGK GT ARV IGQ ++SV
Sbjct: 79 SAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLSV 138
Query: 455 RSTDRWKAQVIEALRRAKFKFPGRQKI 535
R D EALRRAKFKFPGRQKI
Sbjct: 139 RCKDNHGVHAQEALRRAKFKFPGRQKI 165
>At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) /
Wilm's tumor suppressor protein-related similar to tumor
suppressor GI:575354 from [Oryza sativa]
Length = 220
Score = 133 bits (322), Expect = 7e-32
Identities = 61/94 (64%), Positives = 68/94 (72%)
Frame = +1
Query: 40 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 219
MGRRPARCYR K KPYPKSR+CRGVPDPKIRI+D+G KR VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60
Query: 220 SSXALEAGRICCNKYLAKXLRKGSVPYPHETSPF 321
SS ALEA RI CNKY+ K K + PF
Sbjct: 61 SSEALEAARIACNKYMVKSAGKDAFHLRIRVHPF 94
Score = 131 bits (317), Expect = 3e-31
Identities = 62/87 (71%), Positives = 69/87 (79%)
Frame = +2
Query: 275 NCGKDQFHIRMRLHPFHVIRINKMLSCAGADXLXTGMRGAFGKPXGTVARVRIGQPIMSV 454
+ GKD FH+R+R+HPFHV+RINKMLSCAGAD L TGMRGAFGK GT ARV IGQ ++SV
Sbjct: 79 SAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLSV 138
Query: 455 RSTDRWKAQVIEALRRAKFKFPGRQKI 535
R D EALRRAKFKFPGRQKI
Sbjct: 139 RCKDAHGHHAQEALRRAKFKFPGRQKI 165
>At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Nearly
identical to ribosomal protein L10.e, Wilm's tumor
suppressor homologue, gi|17682 (Z15157), however
differences in sequence indicate this is a different
member of the L10 family
Length = 221
Score = 133 bits (321), Expect = 9e-32
Identities = 61/94 (64%), Positives = 68/94 (72%)
Frame = +1
Query: 40 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 219
MGRRPARCYR K KPYPKSR+CRGVPDPKIRI+D+G KR VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPYCVHLVSWEKENV 60
Query: 220 SSXALEAGRICCNKYLAKXLRKGSVPYPHETSPF 321
SS ALEA RI CNKY+ K K + PF
Sbjct: 61 SSEALEAARIACNKYMVKSAGKDAFHLRIRVHPF 94
Score = 131 bits (317), Expect = 3e-31
Identities = 62/87 (71%), Positives = 69/87 (79%)
Frame = +2
Query: 275 NCGKDQFHIRMRLHPFHVIRINKMLSCAGADXLXTGMRGAFGKPXGTVARVRIGQPIMSV 454
+ GKD FH+R+R+HPFHV+RINKMLSCAGAD L TGMRGAFGK GT ARV IGQ ++SV
Sbjct: 79 SAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLSV 138
Query: 455 RSTDRWKAQVIEALRRAKFKFPGRQKI 535
R D EALRRAKFKFPGRQKI
Sbjct: 139 RCKDAHGHHAQEALRRAKFKFPGRQKI 165
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 27.5 bits (58), Expect = 6.4
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -2
Query: 148 PNRRYG-SWDQVHPDRTSISDTVYFCSTGSISLAGAP 41
PN R+G S+D +PD + D VY G +L P
Sbjct: 53 PNHRFGVSYDDGYPDERLMRDDVYNYPPGHNTLGDLP 89
>At1g53180.1 68414.m06027 expressed protein
Length = 358
Score = 27.1 bits (57), Expect = 8.5
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1
Query: 49 RPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGK 153
R +R RYC + PYP S P+ K+ D+GK
Sbjct: 27 RRSRGLRYCHSDPYPSSSSTSTSPE-KMGDSDIGK 60
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,845,020
Number of Sequences: 28952
Number of extensions: 270989
Number of successful extensions: 721
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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