Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_O23
         (434 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein S17|S...   148   4e-37
SPBC839.05c |rps1701|rps17-1|40S ribosomal protein S17|Schizosac...   147   6e-37
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|...    29   0.41 
SPAC1039.04 |||nicotinic acid plasma membrane transporter |Schiz...    27   1.2  
SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces pom...    25   3.8  
SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    25   3.8  
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos...    25   5.0  
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy...    25   6.7  

>SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein
           S17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 132

 Score =  148 bits (358), Expect = 4e-37
 Identities = 70/110 (63%), Positives = 85/110 (77%)
 Frame = +3

Query: 72  RTKTVKKAAXIIIEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHS 251
           RTKT K+A+ ++IEKYY RLTLDF TNKRI +E+AII +K LRNKIAG+ THLM+R++  
Sbjct: 5   RTKTTKRASRVVIEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRG 64

Query: 252 QVRGISIKLXEXERERRDNYVPXVSALEHDIIEVDPDTNDMLXMLDFNNI 401
            VRGIS KL E ERER+D YVP VS LE D I VD DT DML  L +++I
Sbjct: 65  PVRGISFKLQEEERERKDQYVPEVSELEKDKINVDQDTKDMLKALGYDSI 114


>SPBC839.05c |rps1701|rps17-1|40S ribosomal protein
           S17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 131

 Score =  147 bits (357), Expect = 6e-37
 Identities = 72/121 (59%), Positives = 90/121 (74%)
 Frame = +3

Query: 72  RTKTVKKAAXIIIEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHS 251
           RTKT K+A+ ++IEKYY RLTLDF TNKRI +E+AII +K LRNKIAG+ THLM+R++  
Sbjct: 5   RTKTTKRASRVVIEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRG 64

Query: 252 QVRGISIKLXEXERERRDNYVPXVSALEHDIIEVDPDTNDMLXMLDFNNINGLQLTQPAT 431
            VRGIS KL E ERER+D YVP VS LE D + VD DT DML  L ++ I  +++  PA 
Sbjct: 65  PVRGISFKLQEEERERKDQYVPEVSELEVDRVNVDQDTKDMLKSLGYDQI-PVRVLAPAP 123

Query: 432 Q 434
           Q
Sbjct: 124 Q 124


>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 574

 Score = 28.7 bits (61), Expect = 0.41
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 8/67 (11%)
 Frame = +3

Query: 9   FRFSLILVKSSAVQL----QPWVVSRTKTVKKAAXIIIEKYYTRLTLDFDTNKRI----C 164
           F F++ L+K+S + L    QP ++  T  +   A I++  Y  R  + F+T+  I    C
Sbjct: 224 FAFAVYLLKASRIHLETSIQPKLMLLTGIILLVAPILLSYYVWRRRIHFETSFNIIRLAC 283

Query: 165 EEIAIIP 185
             IA IP
Sbjct: 284 RVIADIP 290


>SPAC1039.04 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 12/37 (32%), Positives = 24/37 (64%)
 Frame = -2

Query: 196 RGLVGMIAISSHILLFVSKSSVNLV*YFSIIXFAAFL 86
           RG+V + AIS+ ++ F+   S++++ +  +  FA FL
Sbjct: 352 RGIVLIAAISTTMIGFIVYGSIDIMNHIGVSYFACFL 388


>SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
 Frame = +3

Query: 195 LRNKIAGF----ATHLMRRLRHSQVRGISIKLXEXERERRDNYVPXVSALEHDIIEV 353
           +R +IA F    A H ++R   S+    ++ + E   +R   Y+P +S    + +EV
Sbjct: 372 IREQIASFMLDIADHNVKRYGKSEESSSTMNVGEGLLKRTKKYIPILSRQRQESVEV 428


>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 528

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 214 PAILFLRGLVGMIAISSHILLFVSK 140
           P I  LRGLV   A   H+L F++K
Sbjct: 457 PIIAQLRGLVNESAPGKHVLTFLNK 481


>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 71  GHDPWLKLYSAAFDK 27
           G D WLKL+ +AF K
Sbjct: 146 GDDTWLKLFPSAFSK 160


>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 245

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 168 EIAIIPTKPLRNKIAGFATHLMRRLRHSQVR 260
           EIA++ TKP  + I G       RL  S++R
Sbjct: 209 EIAVVSTKPTDSGIVGVPGGHFCRLSQSEIR 239


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,473,406
Number of Sequences: 5004
Number of extensions: 24250
Number of successful extensions: 70
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)