Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_O23
         (434 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0066 - 537729-538163                                            141   2e-34
10_07_0174 + 13815478-13815903                                        140   6e-34
06_01_0889 - 6807449-6809257                                           29   2.2  

>03_01_0066 - 537729-538163
          Length = 144

 Score =  141 bits (342), Expect = 2e-34
 Identities = 69/118 (58%), Positives = 91/118 (77%)
 Frame = +3

Query: 72  RTKTVKKAAXIIIEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHS 251
           RTKTVKK +  +IEKYY+R+TLDF TNK++ EE++I+P+K LRNK+AGF+THLMRR++  
Sbjct: 5   RTKTVKKTSRQVIEKYYSRMTLDFHTNKKVLEEVSILPSKRLRNKVAGFSTHLMRRIQRG 64

Query: 252 QVRGISIKLXEXERERRDNYVPXVSALEHDIIEVDPDTNDMLXMLDFNNINGLQLTQP 425
            VRGIS+KL E ERERR ++VP  SALE D I VD +T DML  L   ++ G+ + QP
Sbjct: 65  PVRGISLKLQEEERERRMDFVPDRSALEVDDIRVDKETLDMLTSLGMADLPGV-VRQP 121


>10_07_0174 + 13815478-13815903
          Length = 141

 Score =  140 bits (338), Expect = 6e-34
 Identities = 66/117 (56%), Positives = 89/117 (76%)
 Frame = +3

Query: 72  RTKTVKKAAXIIIEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHS 251
           RTKTVKK +  +IEKYY+R+TLDF TNK++ EE++I+P+K LRNK+AGF THLMRR++  
Sbjct: 5   RTKTVKKTSRQVIEKYYSRMTLDFHTNKKVLEEVSILPSKRLRNKVAGFTTHLMRRIQRG 64

Query: 252 QVRGISIKLXEXERERRDNYVPXVSALEHDIIEVDPDTNDMLXMLDFNNINGLQLTQ 422
            VRGIS+KL E ERERR ++VP  SALE + I VD +T +ML  L   ++ G++  Q
Sbjct: 65  PVRGISLKLQEEERERRMDFVPEKSALEVEEIRVDKETMEMLAALGMADLPGVERQQ 121


>06_01_0889 - 6807449-6809257
          Length = 602

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +3

Query: 240 LRHSQVRGI-SIKLXEXERERRDNYVPXVSALEHDIIEVDPD 362
           LRH Q R I ++ +    R R + YVP      HD+ E D +
Sbjct: 487 LRHPQAREIYAMAVDMVSRIRAEGYVPDTGEALHDVAEEDKE 528


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,122,864
Number of Sequences: 37544
Number of extensions: 138576
Number of successful extensions: 352
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 352
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)