Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_O23
         (434 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000263-14|AAG00017.2|  130|Caenorhabditis elegans Ribosomal pr...   147   3e-36
AC006605-8|AAK85439.2|  741|Caenorhabditis elegans Ligase protei...    30   0.63 
U00052-7|AAK21422.2|  232|Caenorhabditis elegans Fatty acid/reti...    27   5.9  
AF106577-10|AAC78189.1|  796|Caenorhabditis elegans Hypothetical...    27   5.9  
AC006648-9|AAF39858.2|  306|Caenorhabditis elegans Btb and math ...    27   5.9  

>AF000263-14|AAG00017.2|  130|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 17 protein.
          Length = 130

 Score =  147 bits (356), Expect = 3e-36
 Identities = 70/111 (63%), Positives = 86/111 (77%), Gaps = 3/111 (2%)
 Frame = +3

Query: 72  RTKTVKKAAXIIIEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHS 251
           RTKTVKKA+ ++IEKYYTR+T DF  NKR+C+E+AII +KPLRNKIAG+ THLMRR+   
Sbjct: 5   RTKTVKKASRVLIEKYYTRMTNDFHNNKRVCDEVAIIGSKPLRNKIAGYITHLMRRIERG 64

Query: 252 QVRGISIKLXEXERERRDNYVPXVSALEHD---IIEVDPDTNDMLXMLDFN 395
            VRGISIKL E ERERRDNY+P +S ++      I+VD DT+DML    FN
Sbjct: 65  PVRGISIKLQEEERERRDNYMPEISTVDPSQLTSIKVDTDTSDMLKAAGFN 115


>AC006605-8|AAK85439.2|  741|Caenorhabditis elegans Ligase protein 4
           protein.
          Length = 741

 Score = 30.3 bits (65), Expect = 0.63
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = +1

Query: 190 SLLGIKLLDLPHI**GVSDT--RKCEESLSNFXXRSVRGVTTMSXKCL 327
           SL GI++  L     G S+T  RKCEE L +F    V+G+T  +  C+
Sbjct: 641 SLTGIEVAVLQ----GTSETIRRKCEEILKHFDATVVKGITPSTKLCI 684


>U00052-7|AAK21422.2|  232|Caenorhabditis elegans Fatty acid/retinol
           binding proteinprotein 8 protein.
          Length = 232

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +2

Query: 212 WICHTFNEASQTLASARNLYQTSXXGA 292
           W CH FN A   ++ A+ L Q     A
Sbjct: 150 WACHIFNNAKSAVSGAKALLQDDSEAA 176


>AF106577-10|AAC78189.1|  796|Caenorhabditis elegans Hypothetical
           protein F46F5.11 protein.
          Length = 796

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
 Frame = +3

Query: 258 RGISIKLXEXERERRDN----YVPXVSALEHDIIEVDPDTNDMLXMLDFNNINGLQL 416
           RG  ++  E  + R D+    Y    +A++  ++  DPD + +  +L  ++ NGL L
Sbjct: 187 RGFPLEHIEKHKNRNDSQVLCYEMKRAAVQQGLVHHDPDVDAIYRLLHADSKNGLNL 243


>AC006648-9|AAF39858.2|  306|Caenorhabditis elegans Btb and math
           domain containingprotein 3 protein.
          Length = 306

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +1

Query: 208 LLDLPHI**GVSDTRKCEESLSNFXXRSVRGVTTMSXKCLLSNMTSS 348
           +L L H+      TRKCEE L +F  + ++    ++ K  L N+  S
Sbjct: 222 ILHLAHMYDMPFPTRKCEEFLIDFSEKPIKEKLKVAKKYQLENLKKS 268


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,021,344
Number of Sequences: 27780
Number of extensions: 129953
Number of successful extensions: 298
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 297
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 735312162
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)