Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_O23
         (434 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g05220.1 68415.m00550 40S ribosomal protein S17 (RPS17B)           144   2e-35
At5g04800.2 68418.m00499 40S ribosomal protein S17 (RPS17D) 40S ...   143   4e-35
At5g04800.1 68418.m00498 40S ribosomal protein S17 (RPS17D) 40S ...   143   4e-35
At2g04390.1 68415.m00442 40S ribosomal protein S17 (RPS17A)           142   9e-35
At3g10610.1 68416.m01276 40S ribosomal protein S17 (RPS17C) simi...   141   2e-34
At4g14180.1 68417.m02189 expressed protein ; expression supporte...    29   1.4  
At5g49780.1 68418.m06165 leucine-rich repeat transmembrane prote...    27   5.5  
At3g24495.1 68416.m03072 DNA mismatch repair protein MSH6-2 (MSH...    27   7.2  
At1g28710.1 68414.m03536 expressed protein similar to GI:2827651...    26   9.5  

>At2g05220.1 68415.m00550 40S ribosomal protein S17 (RPS17B)
          Length = 140

 Score =  144 bits (350), Expect = 2e-35
 Identities = 68/118 (57%), Positives = 93/118 (78%)
 Frame = +3

Query: 72  RTKTVKKAAXIIIEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHS 251
           RTKTVKK++  +IEKYY+R+TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R++  
Sbjct: 5   RTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKG 64

Query: 252 QVRGISIKLXEXERERRDNYVPXVSALEHDIIEVDPDTNDMLXMLDFNNINGLQLTQP 425
            VRGIS+KL E ERERR ++VP  SA++ D I+VD +T +ML  L  ++ +G+   +P
Sbjct: 65  PVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTSGISAVEP 122


>At5g04800.2 68418.m00499 40S ribosomal protein S17 (RPS17D) 40S
           ribosomal protein S17, Lycopersicon esculentum,
           EMBL:AF161704
          Length = 141

 Score =  143 bits (347), Expect = 4e-35
 Identities = 68/118 (57%), Positives = 92/118 (77%)
 Frame = +3

Query: 72  RTKTVKKAAXIIIEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHS 251
           RTKTVKK++  +IEKYY+R+TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R++  
Sbjct: 5   RTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKG 64

Query: 252 QVRGISIKLXEXERERRDNYVPXVSALEHDIIEVDPDTNDMLXMLDFNNINGLQLTQP 425
            VRGIS+KL E ERERR ++VP  SA++ D I+VD +T +ML  L  ++  G+   +P
Sbjct: 65  PVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAVEP 122


>At5g04800.1 68418.m00498 40S ribosomal protein S17 (RPS17D) 40S
           ribosomal protein S17, Lycopersicon esculentum,
           EMBL:AF161704
          Length = 141

 Score =  143 bits (347), Expect = 4e-35
 Identities = 68/118 (57%), Positives = 92/118 (77%)
 Frame = +3

Query: 72  RTKTVKKAAXIIIEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHS 251
           RTKTVKK++  +IEKYY+R+TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R++  
Sbjct: 5   RTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKG 64

Query: 252 QVRGISIKLXEXERERRDNYVPXVSALEHDIIEVDPDTNDMLXMLDFNNINGLQLTQP 425
            VRGIS+KL E ERERR ++VP  SA++ D I+VD +T +ML  L  ++  G+   +P
Sbjct: 65  PVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAVEP 122


>At2g04390.1 68415.m00442 40S ribosomal protein S17 (RPS17A)
          Length = 141

 Score =  142 bits (344), Expect = 9e-35
 Identities = 68/118 (57%), Positives = 91/118 (77%)
 Frame = +3

Query: 72  RTKTVKKAAXIIIEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHS 251
           RTKTVKK++  +IEKYY+R+TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R++  
Sbjct: 5   RTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKG 64

Query: 252 QVRGISIKLXEXERERRDNYVPXVSALEHDIIEVDPDTNDMLXMLDFNNINGLQLTQP 425
            VRGIS+KL E ERERR ++VP  SA++ D I+VD +T +ML  L  ++  G+    P
Sbjct: 65  PVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTLGISAVDP 122


>At3g10610.1 68416.m01276 40S ribosomal protein S17 (RPS17C) similar
           to 40S ribosomal protein S17 GB:AAD50774 [Lycopersicon
           esculentum]
          Length = 140

 Score =  141 bits (342), Expect = 2e-34
 Identities = 67/113 (59%), Positives = 91/113 (80%)
 Frame = +3

Query: 72  RTKTVKKAAXIIIEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHS 251
           RTKTVKK++  +IEKYY+R+TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R++  
Sbjct: 5   RTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKG 64

Query: 252 QVRGISIKLXEXERERRDNYVPXVSALEHDIIEVDPDTNDMLXMLDFNNINGL 410
            VRGIS+KL E ERERR ++VP  SA++ D ++VD +T +ML  L  ++I G+
Sbjct: 65  PVRGISLKLQEEERERRMDFVPDESAIKIDDVKVDKETLEMLASLGMSDIAGI 117


>At4g14180.1 68417.m02189 expressed protein ; expression supported
           by MPSS
          Length = 1268

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
 Frame = +3

Query: 9   FRFSLILVKSSAVQLQPWVVSRTKTVKKAAXI--IIEKYYTR-LTLDFDTNKRICEEIAI 179
           F+   + + SS +   P + S ++  + A  +  ++E+YY++ + L  D    IC     
Sbjct: 388 FQIQTLKLISSCISDFPGIASSSQVQEIALVLKKMLERYYSQEMGLFPDAFAIICSVFVS 447

Query: 180 IPTKPLRNKIAGFATHLMRRLRHSQVRGISI 272
           +   P   + A   T L   LRHS +  +S+
Sbjct: 448 LMKTPSFGETADVLTSLQESLRHSILASLSL 478


>At5g49780.1 68418.m06165 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 1006

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 13/46 (28%), Positives = 27/46 (58%)
 Frame = +3

Query: 18  SLILVKSSAVQLQPWVVSRTKTVKKAAXIIIEKYYTRLTLDFDTNK 155
           SL  ++ + +QLQ  + +   ++ +   +I+++ +   TLDF TNK
Sbjct: 366 SLSTLRMAGLQLQGPIPTSLFSLPELQTVILKRNWLNETLDFGTNK 411


>At3g24495.1 68416.m03072 DNA mismatch repair protein MSH6-2 (MSH7)
           identical to SP|Q9SMV7 DNA mismatch repair protein
           MSH6-2 (AtMsh6-2) (MutS homolog 7) {Arabidopsis
           thaliana}; GC donor splice site at exon 11
          Length = 1109

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +1

Query: 121 IQD*HLILIQIKEYVKKSLSFLPSLLGIKLL 213
           + D   +L +IK  V+ S S LP+LLG K+L
Sbjct: 635 LPDLERLLGRIKSSVRSSASVLPALLGKKVL 665


>At1g28710.1 68414.m03536 expressed protein similar to GI:2827651,
           GI:7527728, GI:4406788, GI:6063544, GI:10764853 from
           [Arabidopsis thaliana]
          Length = 340

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 4/41 (9%)
 Frame = -1

Query: 305 VTPLTLLFXKFDR-DSSHLRVSETPH*MCGKS---SNFIPK 195
           ++ LTL+   + R  +SH+  + +PH  CG+S   +++IPK
Sbjct: 299 ISDLTLVLRDWKRYKASHVNSNWSPHVECGRSWSDTHYIPK 339


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,531,859
Number of Sequences: 28952
Number of extensions: 118678
Number of successful extensions: 306
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 306
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 683042040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)