Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_O21
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1 |...    40   4e-04
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    25   7.2  
SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr 1...    25   7.2  
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr...    25   9.5  
SPBC32H8.08c |||mannosyltransferase complex subunit |Schizosacch...    25   9.5  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    25   9.5  

>SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 39.5 bits (88), Expect = 4e-04
 Identities = 16/53 (30%), Positives = 29/53 (54%)
 Frame = +2

Query: 362 VFHSKPKILFCDLTIPLGETKTFWYXESLPIEAPPSYRGTSVKYSYKITIATQ 520
           V  ++P IL  D+T+  GE K F     +P+   P+Y+G + ++ + + I  Q
Sbjct: 124 VLLTRPDILGVDITLSPGEEKCFRLKRRIPLRTAPTYKGLAFRFQHALVIGVQ 176


>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
           Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 622 FITTQSSKILHIYYWAYWQHXKRNSDHFN 536
           F+TTQ++ IL   + A+W +   NS   N
Sbjct: 904 FVTTQATSILIDLWVAFWTNSSVNSPDVN 932


>SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = +1

Query: 166 CISFCYTAQPEHRNSQSHSDTLXNLAWASA 255
           C+S  Y   PE +   +H+D + +  W ++
Sbjct: 124 CVSVDYRLAPESKFPVAHNDAIDSFKWVAS 153


>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 697

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -2

Query: 553 NSDHFNVRPHFLCCYCYF 500
           +  HF+ R   L C+CY+
Sbjct: 582 DDSHFSFRSQILICWCYY 599


>SPBC32H8.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = -2

Query: 304 GFVTLSXLTLNRSNGTVLKPKLDFXMCHCGFASSYVQVELYNRKKYN 164
           G+  L    LNR +G +      + +CH        +++ YN K+YN
Sbjct: 308 GYYVLPEPPLNRIDGQI------YNLCHFWSNFEIARLDFYNSKEYN 348


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 28/98 (28%), Positives = 43/98 (43%)
 Frame = +2

Query: 263 IASIQRQGAQGDKTPILXKTTSLEVAACDVGDAVFHSKPKILFCDLTIPLGETKTFWYXE 442
           I S+Q   +   + PI     +L     D   A+     K L CDL IP+ E K F   +
Sbjct: 261 IRSVQWIRSFVPQAPIHQVINTLAQTKWDETAALSILSQKYLSCDLGIPIQEHKRF--KQ 318

Query: 443 SLPIEAPPSYRGTSVKYSYKITIATQKVGSHIKMVRIP 556
           S      P+Y G+S +     T+ +QK     K +++P
Sbjct: 319 SPVASNMPTY-GSSNR-----TVQSQKRSIRDKYIQMP 350


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,685,996
Number of Sequences: 5004
Number of extensions: 55008
Number of successful extensions: 144
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)