Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_O21
         (653 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g66950.1 68414.m07612 ABC transporter family protein similar ...    31   0.88 
At1g50120.1 68414.m05621 expressed protein                             29   2.7  
At1g72270.1 68414.m08355 expressed protein                             28   4.7  
At2g45610.1 68415.m05671 expressed protein low similarity to PrM...    28   6.2  
At5g61840.1 68418.m07759 exostosin family protein contains Pfam ...    27   8.2  
At1g27440.1 68414.m03345 exostosin family protein contains Pfam ...    27   8.2  

>At1g66950.1 68414.m07612 ABC transporter family protein similar to
            PDR5-like ABC transporter GI:1514643 from [Spirodela
            polyrhiza]
          Length = 1454

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 643  RVKFLSSFITTQSSKILHIYYWAYWQHXKRNSDHF 539
            + K+  SF +TQ+       YW+YW+H + N+  F
Sbjct: 1169 KTKYAQSF-STQTKACFWKQYWSYWRHPQYNAIRF 1202


>At1g50120.1 68414.m05621 expressed protein
          Length = 532

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = +2

Query: 353 GDAVF--HSKPKILFCDLTIPLGETKTFWYXESLPIEAPPSYRGTSVKYSYKI 505
           G+ +F   S P ++   +  P G   T      LP   PPSY+G +++Y Y I
Sbjct: 99  GEHIFLDSSTPSLISNQILSP-GAKMTLMVRAILPQIIPPSYKGATLRYLYYI 150


>At1g72270.1 68414.m08355 expressed protein
          Length = 2777

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -1

Query: 440 LCTRMFSFHLVV*SSHRTIF*VYYGTLRLQHHRLLL 333
           +C R FS  L+    H ++F V +GTLR     L L
Sbjct: 817 ICPRPFSQSLIARGMHHSVFLVKHGTLRFLWETLRL 852


>At2g45610.1 68415.m05671 expressed protein low similarity to PrMC3
           [Pinus radiata] GI:5487873
          Length = 324

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/39 (33%), Positives = 16/39 (41%)
 Frame = +1

Query: 142 LAGEAIECCISFCYTAQPEHRNSQSHSDTLXNLAWASAQ 258
           +A E     +S  Y   PEHR    + D L  L W   Q
Sbjct: 107 MASELTVIVVSVHYRLPPEHRLPAQYDDALDALLWVKQQ 145


>At5g61840.1 68418.m07759 exostosin family protein contains Pfam
           profile: PF03016 exostosin family ;supported by cDNA
           gi|23821293|dbj|AB080693.1|;
          Length = 415

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = -2

Query: 580 WAYWQHXKRNSDHFNVRPH-FLCCYCY 503
           W YW   +  +DHF V PH F  C+ Y
Sbjct: 138 WPYWNRTE-GADHFFVVPHDFGACFHY 163


>At1g27440.1 68414.m03345 exostosin family protein contains Pfam
           profile: PF03016 exostosin family
          Length = 412

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = -2

Query: 580 WAYWQHXKRNSDHFNVRPH-FLCCYCY 503
           W YW   +  +DHF V PH F  C+ Y
Sbjct: 135 WPYWNRTE-GADHFFVVPHDFGACFHY 160


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,540,294
Number of Sequences: 28952
Number of extensions: 270029
Number of successful extensions: 648
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)