Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_O19
         (655 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    24   0.95 
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     21   8.9  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   8.9  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   8.9  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    21   8.9  

>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 24.2 bits (50), Expect = 0.95
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -3

Query: 566 YSGVQLWCIMPIPPQSAMDMAMSASVTVSIGVD 468
           YSG     + P PPQ +M  +M ++   S   D
Sbjct: 313 YSGTPTPMMSPAPPQDSMGYSMGSAYDQSSAYD 345


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -2

Query: 540 NANSTAKRHGYGHVSFCHCVHWSRH 466
           N NS    +GYG+ ++ H    S H
Sbjct: 69  NYNSNVLSNGYGYGNYYHPQLHSHH 93


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -2

Query: 540 NANSTAKRHGYGHVSFCHCVHWSRH 466
           N NS    +GYG+ ++ H    S H
Sbjct: 69  NYNSNVLSNGYGYGNYYHPQLHSHH 93


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -2

Query: 540 NANSTAKRHGYGHVSFCHCVHWSRH 466
           N NS    +GYG+ ++ H    S H
Sbjct: 69  NYNSNVLSNGYGYGNYYHPQLHSHH 93


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -2

Query: 540 NANSTAKRHGYGHVSFCHCVHWSRH 466
           N NS    +GYG+ ++ H    S H
Sbjct: 69  NYNSNVLSNGYGYGNYYHPQLHSHH 93


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,152
Number of Sequences: 336
Number of extensions: 2877
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16865010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)