Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_O19
(655 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2F12.14c |gua1||IMP dehydrogenase Gua1 |Schizosaccharomyces ... 140 2e-34
SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p... 30 0.25
SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein S26|Schizosa... 29 0.77
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 27 2.4
SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein S26|Sc... 26 4.1
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb... 26 5.5
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 26 5.5
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 7.2
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos... 25 9.5
>SPBC2F12.14c |gua1||IMP dehydrogenase Gua1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 524
Score = 140 bits (338), Expect = 2e-34
Identities = 66/127 (51%), Positives = 89/127 (70%), Gaps = 2/127 (1%)
Frame = +1
Query: 277 TKKMSLKTEGDLRXGLSAEDTFANS--EGLTYNDFLLLPGYIDFTAEEVDLTSPLTKKIL 450
T+ + + + + + GLS +D ++ GLT+NDFL+LPGYIDF V L + +++ I+
Sbjct: 8 TEALEVLKKYEKKDGLSIDDLIRHNFQGGLTFNDFLILPGYIDFVPNNVSLETRISRNIV 67
Query: 451 LKAPLVSTPMDTVTEADMAISMALCGGIGIIHHNCTPEYQANEXHKVXKYKHGFIXDPVC 630
LK P +S+PMDTVTE MAI MAL GGIG+IHHNCTPE QA KV KY++GFI DPV
Sbjct: 68 LKTPFMSSPMDTVTEDQMAIYMALLGGIGVIHHNCTPEEQAAMVRKVKKYENGFILDPVV 127
Query: 631 MGPENTV 651
P++TV
Sbjct: 128 FSPQHTV 134
>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 417
Score = 30.3 bits (65), Expect = 0.25
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = -3
Query: 473 VDTRGAFNRIFLVSGDVKSTSSAVKSIYP-GSSKKSLYVSPSLLAKVSSADNPXRRSPSV 297
+ T GA +GD ++TSS S+ P SS + V+P + V+++ P S V
Sbjct: 55 ISTNGAAKEAATAAGDAETTSSVAASVTPAASSSVAASVTPVASSSVAASVTPVSSSAVV 114
>SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein
S26|Schizosaccharomyces pombe|chr 1|||Manual
Length = 119
Score = 28.7 bits (61), Expect = 0.77
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 534 NSTAKRHGYGHVSFCHCVHWSR 469
N+ +HG GHV F C++ SR
Sbjct: 7 NNGRNKHGRGHVKFVRCINCSR 28
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 27.1 bits (57), Expect = 2.4
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Frame = +1
Query: 355 GLTYNDFLLLPGY----IDFTAEEVDLTSPLTKKILLK 456
G TYND P + D+T++E+DL +P T + K
Sbjct: 1941 GRTYNDLTQYPVFPWVIADYTSKELDLNNPKTYRNFCK 1978
>SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein
S26|Schizosaccharomyces pombe|chr 1|||Manual
Length = 120
Score = 26.2 bits (55), Expect = 4.1
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = -2
Query: 534 NSTAKRHGYGHVSFCHCVHWSR 469
N +HG GH F C++ SR
Sbjct: 7 NCGRNKHGRGHTKFVRCINCSR 28
>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 827
Score = 25.8 bits (54), Expect = 5.5
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = -3
Query: 398 SIYPGSSKKSLYVSPSLLAKVSSADNPXRRSPSVFNDIFFVRDIF 264
SI+P S KK + VSP +L S S S ++ ++F
Sbjct: 537 SIFPTSDKKHIVVSPVMLTMAESLSQSPADSLSDVCKKLYIANLF 581
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 25.8 bits (54), Expect = 5.5
Identities = 24/77 (31%), Positives = 33/77 (42%)
Frame = -3
Query: 509 MAMSASVTVSIGVDTRGAFNRIFLVSGDVKSTSSAVKSIYPGSSKKSLYVSPSLLAKVSS 330
++ S S G D + N+IF ++ V +S S GSS KS VSP A S
Sbjct: 376 LSQSQSQVSDEGFDRTLSANQIFGMNQSVIGANSG-SSNSSGSSLKSAPVSPRTAAAQSL 434
Query: 329 ADNPXRRSPSVFNDIFF 279
N S + N + F
Sbjct: 435 LPNSVVSSINGMNSVNF 451
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 7.2
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Frame = -3
Query: 533 IPPQSAMDMAMSASVTVSIGVDTRGAFNRIFLVSGD----VKSTSSAVKSIYPGSSKKSL 366
+P +++++++S+S S T F+ + + V STSS+ S +S S
Sbjct: 149 LPSSTSVEVSISSSSLSSSDPLTSSTFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSS 208
Query: 365 YVSPSLLAKVSSADNPXRRSPS 300
Y+S S + VSS+ +P S S
Sbjct: 209 YLSSS--SVVSSSSSPSSSSSS 228
>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 601
Score = 25.0 bits (52), Expect = 9.5
Identities = 16/72 (22%), Positives = 28/72 (38%)
Frame = -3
Query: 536 PIPPQSAMDMAMSASVTVSIGVDTRGAFNRIFLVSGDVKSTSSAVKSIYPGSSKKSLYVS 357
P+ P A++ + T + V + N F V ++ S + YP S+ Y +
Sbjct: 340 PLQPARTGPAAINYNYTTNYSVSSPSVTNPFFDVGSSTQNASLMGSTGYPSSANNVYYEN 399
Query: 356 PSLLAKVSSADN 321
S +DN
Sbjct: 400 SYQGVGTSMSDN 411
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,457,984
Number of Sequences: 5004
Number of extensions: 46208
Number of successful extensions: 133
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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