Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_O19
(655 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0175 + 32152428-32153423,32153692-32153889,32154942-321551... 83 2e-16
04_03_0052 + 10257109-10257337,10257580-10257668,10257708-102582... 32 0.46
03_05_0207 - 21985340-21985570,21986430-21986636,21999578-219996... 29 4.3
09_02_0191 + 5571287-5571355,5571481-5571699,5571755-5571811,557... 28 5.6
04_03_0008 + 9296711-9298096 28 7.5
09_04_0387 - 17197626-17197785,17198095-17198213,17198751-171988... 27 9.9
07_03_0105 + 13455906-13457198 27 9.9
01_06_0996 + 33667663-33667900,33668019-33668091,33668785-336688... 27 9.9
>03_06_0175 +
32152428-32153423,32153692-32153889,32154942-32155121,
32156224-32156481,32157310-32157381
Length = 567
Score = 82.6 bits (195), Expect = 2e-16
Identities = 41/110 (37%), Positives = 60/110 (54%)
Frame = +1
Query: 319 GLSAEDTFANSEGLTYNDFLLLPGYIDFTAEEVDLTSPLTKKILLKAPLVSTPMDTVTEA 498
G A F+ TY+D + LPGYI F A+ VDL++ L+++I L P V++PMDTV+EA
Sbjct: 12 GFPAPRLFSQGVSYTYDDVIFLPGYIGFPADAVDLSTRLSRRIPLSIPCVASPMDTVSEA 71
Query: 499 DMAISMALCGGIGIIHHNCTPEYQANEXHKVXKYKHGFIXDPVCMGPENT 648
MA +MA G ++H N P QA+ + F+ P +T
Sbjct: 72 AMAAAMASLGAAAVVHCNTEPHLQASIVRAAKSRRLPFVSSVPLFSPAST 121
>04_03_0052 +
10257109-10257337,10257580-10257668,10257708-10258289,
10258477-10258668,10259392-10259563,10260190-10260461,
10260682-10260801,10260912-10260968,10261631-10261831,
10262451-10262511,10262712-10263013
Length = 758
Score = 31.9 bits (69), Expect = 0.46
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = +1
Query: 475 PMDTVTEADMAISMALCGGIGIIHHNCTPEYQANEXHKVXKYKHGFIXDPVCMGPEN 645
P TV D ++ +CGG+G ++C PE + + +GF +GP N
Sbjct: 28 PQGTVKALDSHVTCEVCGGMGHSGNDC-PETREEAMYMGNNNNNGFRPQGAALGPAN 83
>03_05_0207 -
21985340-21985570,21986430-21986636,21999578-21999667,
21999764-21999945,22000130-22001042,22003184-22003266,
22004622-22004939,22005044-22005107
Length = 695
Score = 28.7 bits (61), Expect = 4.3
Identities = 20/82 (24%), Positives = 30/82 (36%)
Frame = -3
Query: 542 IMPIPPQSAMDMAMSASVTVSIGVDTRGAFNRIFLVSGDVKSTSSAVKSIYPGSSKKSLY 363
I+P+PP S IGV +N++ VK ++ + + KK Y
Sbjct: 157 ILPLPPMDHSSSEESDVSDSDIGVHEEKTYNQLRAEKVKVKHGNNTFRCPFCPGKKKQDY 216
Query: 362 VSPSLLAKVSSADNPXRRSPSV 297
S LL S +R V
Sbjct: 217 SSKDLLQHASGVGAASKRKAKV 238
>09_02_0191 +
5571287-5571355,5571481-5571699,5571755-5571811,
5571988-5572047,5572088-5572117
Length = 144
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = -2
Query: 639 RTHANGVXNKSMLILXHFVXFISLVFWSTVVVYNANSTAKRHGYGHVSFC 490
R +G K +LI FI++ W T +++ + HG HVSFC
Sbjct: 87 RQDDSGSKTKFILIPYGLAMFITIENWKTK---SSDHNVQSHGMYHVSFC 133
>04_03_0008 + 9296711-9298096
Length = 461
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 475 PMDTVTEADMAISMALCGGIGIIHHNCTPE 564
P DTV D+ ++ +CGG G ++C PE
Sbjct: 131 PQDTVKALDLHVTCEVCGGTGHSGNDC-PE 159
>09_04_0387 -
17197626-17197785,17198095-17198213,17198751-17198857,
17199000-17199078,17199210-17199551,17199695-17199847,
17199949-17200267,17200457-17200680
Length = 500
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -2
Query: 609 SMLILXHFVXFISLVFWSTVVVYNANSTAKRHGYGH 502
S +I+ FISL F V Y + K HGYGH
Sbjct: 4 SFVIVIVISFFISLAFMC-YVHYTSRQRRKLHGYGH 38
>07_03_0105 + 13455906-13457198
Length = 430
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 457 APLVSTPMDTVTEADMAISMALCGGI 534
A STP DT+ A S+ LCGG+
Sbjct: 251 AAAFSTPYDTIARHTDAKSVVLCGGV 276
>01_06_0996 +
33667663-33667900,33668019-33668091,33668785-33668841,
33668970-33669067,33669482-33669637,33669744-33670366,
33670484-33670560,33671551-33671805,33671950-33672067,
33672174-33672345,33672434-33672975
Length = 802
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 296 RRKATSXMGYLLRIPSLTVKDLHITI 373
R ATS GY L +PS++V DL +
Sbjct: 685 RCNATSLPGYYLNLPSISVPDLRYPV 710
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,930,117
Number of Sequences: 37544
Number of extensions: 265927
Number of successful extensions: 734
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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