Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_O19
         (655 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52186| Best HMM Match : IMPDH (HMM E-Value=0)                      151   5e-37
SB_976| Best HMM Match : No HMM Matches (HMM E-Value=.)                62   9e-17
SB_909| Best HMM Match : Transgly_assoc (HMM E-Value=2.2)              32   0.47 
SB_35416| Best HMM Match : Cyanate_lyase (HMM E-Value=0.076)           30   1.9  
SB_26485| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_27410| Best HMM Match : Peptidase_A24 (HMM E-Value=9.3)             29   4.4  
SB_17671| Best HMM Match : 7tm_1 (HMM E-Value=0.00083)                 28   7.6  

>SB_52186| Best HMM Match : IMPDH (HMM E-Value=0)
          Length = 876

 Score =  151 bits (366), Expect = 5e-37
 Identities = 68/111 (61%), Positives = 88/111 (79%)
 Frame = +1

Query: 319 GLSAEDTFANSEGLTYNDFLLLPGYIDFTAEEVDLTSPLTKKILLKAPLVSTPMDTVTEA 498
           GL+A   F   +GLTY+DFL+LPG+IDF+A+ V+L S LT++I LK P VS+PMDTVTE+
Sbjct: 210 GLTANALFGGGQGLTYDDFLILPGFIDFSADVVELNSALTREITLKTPFVSSPMDTVTES 269

Query: 499 DMAISMALCGGIGIIHHNCTPEYQANEXHKVXKYKHGFIXDPVCMGPENTV 651
            MA++MAL GGIGIIHHNC+ E+QA+E  KV KYK GFI DP+ + P +TV
Sbjct: 270 AMAVAMALHGGIGIIHHNCSIEFQADEVKKVKKYKQGFINDPLVLSPRHTV 320


>SB_976| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 447

 Score = 62.5 bits (145), Expect(2) = 9e-17
 Identities = 28/52 (53%), Positives = 35/52 (67%)
 Frame = +1

Query: 499 DMAISMALCGGIGIIHHNCTPEYQANEXHKVXKYKHGFIXDPVCMGPENTVA 654
           D   +  L GGIGIIHHNC+ E+QANE  KV K++ GFI  P+ +   NTVA
Sbjct: 42  DFPATDVLNGGIGIIHHNCSIEFQANEIRKVKKFEQGFIMAPLVLSATNTVA 93



 Score = 41.9 bits (94), Expect(2) = 9e-17
 Identities = 18/33 (54%), Positives = 26/33 (78%)
 Frame = +1

Query: 319 GLSAEDTFANSEGLTYNDFLLLPGYIDFTAEEV 417
           G++A   F  S+GLTY+DF++LPG+IDF A +V
Sbjct: 17  GMTAGQLF-QSDGLTYSDFIILPGFIDFPATDV 48


>SB_909| Best HMM Match : Transgly_assoc (HMM E-Value=2.2)
          Length = 243

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 21/77 (27%), Positives = 34/77 (44%)
 Frame = +1

Query: 286 MSLKTEGDLRXGLSAEDTFANSEGLTYNDFLLLPGYIDFTAEEVDLTSPLTKKILLKAPL 465
           +S    G L  G+S E  F + + L     ++L G        +      T K L   PL
Sbjct: 127 LSFILSGSLIIGISCESLFKSKQELQPRSLIILSGTAAIVNGILSYIIFNTSKRLRSVPL 186

Query: 466 VSTPMDTVTEADMAISM 516
           ++  +DTV EA M++ +
Sbjct: 187 LTLSIDTVFEALMSLGV 203


>SB_35416| Best HMM Match : Cyanate_lyase (HMM E-Value=0.076)
          Length = 646

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 492 CHCVHWSRH*RCF*QNFLSEWRCQIDFFCC 403
           CHC   S++  CF + FL   R  ++ FCC
Sbjct: 493 CHCTRHSKNCGCFSEQFLKNAR--VNHFCC 520


>SB_26485| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 801

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 492 CHCVHWSRH*RCF*QNFLSEWRCQIDFFCC 403
           CHC   S++  CF + FL   R  ++ FCC
Sbjct: 512 CHCTRHSKNCGCFSKQFLKNAR--VNHFCC 539


>SB_27410| Best HMM Match : Peptidase_A24 (HMM E-Value=9.3)
          Length = 156

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
 Frame = -2

Query: 579 FISLVFWSTVVVYNANSTAKRHGYGHVSF---CHC--VHWSRH*RCF 454
           F SL +W   +V         H Y H+ F   CHC   H SRH  C+
Sbjct: 13  FESLGYWEISMVLVLARCLYCHRYCHIIFVVICHCNRYHRSRHRHCY 59


>SB_17671| Best HMM Match : 7tm_1 (HMM E-Value=0.00083)
          Length = 585

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/43 (25%), Positives = 26/43 (60%)
 Frame = -2

Query: 654 SDCVLRTHANGVXNKSMLILXHFVXFISLVFWSTVVVYNANST 526
           S+ ++  H N + + + +I+ H    IS+   +T+++Y+ N+T
Sbjct: 513 SNIIIIYHDNTIISSNTIIIYHDNTTISISSDNTIIIYHDNTT 555


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,779,456
Number of Sequences: 59808
Number of extensions: 325844
Number of successful extensions: 774
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)