Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_O19
         (655 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g79470.1 68414.m09262 inosine-5'-monophosphate dehydrogenase ...    93   1e-19
At1g16350.1 68414.m01956 inosine-5'-monophosphate dehydrogenase,...    93   1e-19
At3g58360.1 68416.m06505 meprin and TRAF homology domain-contain...    29   3.6  
At3g30390.1 68416.m03836 amino acid transporter family protein l...    28   6.2  

>At1g79470.1 68414.m09262 inosine-5'-monophosphate dehydrogenase
           identical to inosine-5'-monophosphate dehydrogenase
           SP|P47996 {Arabidopsis thaliana}
          Length = 503

 Score = 93.1 bits (221), Expect = 1e-19
 Identities = 45/111 (40%), Positives = 65/111 (58%)
 Frame = +1

Query: 310 LRXGLSAEDTFANSEGLTYNDFLLLPGYIDFTAEEVDLTSPLTKKILLKAPLVSTPMDTV 489
           L  G  A+  FA     TY+D + LP +IDF+ + V L++ L++++ L  P VS+PMDTV
Sbjct: 4   LEDGFPADKLFAQGYSYTYDDVIFLPHFIDFSTDAVSLSTRLSRRVPLSIPCVSSPMDTV 63

Query: 490 TEADMAISMALCGGIGIIHHNCTPEYQANEXHKVXKYKHGFIXDPVCMGPE 642
           +E+ MA +MA  GGIGI+H+NC    QA+   +    KH    D     PE
Sbjct: 64  SESHMAAAMASLGGIGIVHYNCGIAAQASIIRQAKSLKHPIASDAGVKFPE 114


>At1g16350.1 68414.m01956 inosine-5'-monophosphate dehydrogenase,
           putative strong similarity to SP|P47996 gb|L34684
           inosine monophosphate dehydrogenase (IMPDH) from
           Arabidopsis thaliana; member of the PF|00478 IMP
           dehydrogenase family
          Length = 502

 Score = 93.1 bits (221), Expect = 1e-19
 Identities = 44/111 (39%), Positives = 67/111 (60%)
 Frame = +1

Query: 319 GLSAEDTFANSEGLTYNDFLLLPGYIDFTAEEVDLTSPLTKKILLKAPLVSTPMDTVTEA 498
           G SAE  F+     TY+D + LP +IDF+ + V L++ L+K++ L  P V++PMDTV+E+
Sbjct: 7   GFSAEKLFSQGYSYTYDDVIFLPHFIDFSTDAVSLSTRLSKRVPLSIPCVASPMDTVSES 66

Query: 499 DMAISMALCGGIGIIHHNCTPEYQANEXHKVXKYKHGFIXDPVCMGPENTV 651
            MA +MA  GGIGI+H+NC  + QA+        +     D V   PE+ +
Sbjct: 67  HMAAAMAALGGIGIVHYNCDIDTQASVIRHAKSLQVPIASDAVFKCPEHQI 117


>At3g58360.1 68416.m06505 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein similar to
           ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 298

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +1

Query: 328 AEDTFANSEGLTYNDFLLLPGYIDFTAEEVDLTSPLTKKILLKAP 462
           +E+T    E + +N F LLP  +DF     +    +  +  LK P
Sbjct: 143 SEETSTIMESMDFNGFQLLPSQVDFVRHMFEKHPEIASEFRLKNP 187


>At3g30390.1 68416.m03836 amino acid transporter family protein low
           similarity to neuronal glutamine transporter [Rattus
           norvegicus] GI:6978016; belongs to INTERPRO:IPR002422
           amino acid/polyamine transporter, family II
          Length = 460

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 18/49 (36%), Positives = 27/49 (55%)
 Frame = +3

Query: 153 LLKDNYHVWIFSRETTLPAFLITLPVLVNQIKSDLXXKYITYEKNVIKD 299
           +LKD  H    +R+TTL  F+I L VL N I +     Y  ++KN  ++
Sbjct: 414 ILKDR-HDKATNRDTTLAIFMIVLAVLSNAI-AIYSDAYALFKKNAPRE 460


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,410,486
Number of Sequences: 28952
Number of extensions: 228553
Number of successful extensions: 625
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)