Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_O15
(610 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39807| Best HMM Match : Ribosomal_S8e (HMM E-Value=0) 175 2e-44
SB_22712| Best HMM Match : Ribosomal_S8e (HMM E-Value=0.068) 51 6e-07
SB_20235| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_37792| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_38622| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_4689| Best HMM Match : Dicty_CTDC (HMM E-Value=5.8) 29 3.9
SB_56915| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.0
SB_40040| Best HMM Match : hATC (HMM E-Value=3.7e-08) 27 9.0
SB_41614| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.0
>SB_39807| Best HMM Match : Ribosomal_S8e (HMM E-Value=0)
Length = 192
Score = 175 bits (426), Expect = 2e-44
Identities = 84/123 (68%), Positives = 95/123 (77%)
Frame = +1
Query: 163 RSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDA 342
R+RGGN K+RA RLDT NFSWGSE TRK RIIDVVYNASNNELVRTKTLVKN IV VD+
Sbjct: 31 RTRGGNRKFRAFRLDTENFSWGSESCTRKARIIDVVYNASNNELVRTKTLVKNCIVQVDS 90
Query: 343 TPFRQWYESHYTLPLGRKKGAKLTEAEEAIINXKRSQKTARKYLARQRLAKVEGALXEQF 522
TPFRQWYE+HY +P+GRKK + TE E+ I+N KRS RK AR+ AKV + EQF
Sbjct: 91 TPFRQWYEAHYAIPIGRKKTKQPTEEEQEILNKKRSNHCTRKLEARKANAKVAPGMEEQF 150
Query: 523 HTG 531
TG
Sbjct: 151 VTG 153
Score = 50.4 bits (115), Expect = 1e-06
Identities = 22/27 (81%), Positives = 23/27 (85%)
Frame = +2
Query: 530 GRLLACVASRPGQCGRADGYILXGKEL 610
GRL ACV+SRPGQ GR DGYIL GKEL
Sbjct: 153 GRLYACVSSRPGQSGRCDGYILEGKEL 179
Score = 44.0 bits (99), Expect = 1e-04
Identities = 17/25 (68%), Positives = 22/25 (88%)
Frame = +3
Query: 81 PIRKKRKYELGRPAANTRLGPQRIH 155
P+R KRK+ELGRP ANT++G +RIH
Sbjct: 4 PLRHKRKFELGRPPANTKIGTKRIH 28
>SB_22712| Best HMM Match : Ribosomal_S8e (HMM E-Value=0.068)
Length = 147
Score = 51.2 bits (117), Expect = 6e-07
Identities = 22/70 (31%), Positives = 43/70 (61%)
Frame = +1
Query: 163 RSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDA 342
++ GG+TK +ALR++ G ++ S+ + I+ V+++ +N E + +VK +IV VD
Sbjct: 44 KAYGGHTKIKALRVNKGVYTLKSQGVEVEAPILSVMHSFANKEHIERNVIVKGSIVQVDN 103
Query: 343 TPFRQWYESH 372
PF W++ +
Sbjct: 104 KPFEDWFQEY 113
>SB_20235| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 96
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -3
Query: 227 PQEKLPVSRRSARYLVFPPRERXGVDSLRAEPGVCS 120
P+ P+ R ARY+V R R VDS +A V S
Sbjct: 28 PEPDFPIDRARARYMVGSARARYPVDSAKARSPVDS 63
>SB_37792| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 230
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = +1
Query: 241 TRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFR 354
T++ +I D++ N N VR +TL+ NA +++D F+
Sbjct: 18 TKRKKIADILSNEIRN--VRERTLILNAALIIDICVFK 53
>SB_38622| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3824
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +1
Query: 118 PLQTPGSALSESTPXRSRGGNTKYRALRLDTGNFS 222
P ++++ P +GGN +YR + DTG FS
Sbjct: 1630 PFNFQVTSITALDPDTGQGGNVEYRIVSPDTGKFS 1664
>SB_4689| Best HMM Match : Dicty_CTDC (HMM E-Value=5.8)
Length = 530
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/47 (23%), Positives = 24/47 (51%)
Frame = -3
Query: 371 CDSYHCLNGVASTTTIAFLTRVFVRTNSLLDALYTTSMIRVLRVEHS 231
CD+ HC + T+T+ + +V + + ++ ++ V R +HS
Sbjct: 448 CDNDHCSQELCLTSTVDQIQQVLNNCDKIKTQVHVEGLVEVWRKDHS 494
>SB_56915| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 720
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +3
Query: 240 NSQNPYH*CCV*CI*Q*-IGAYKDPCQECNCCSRCNSI 350
+S YH C C+ I Y DP EC CS+C+ +
Sbjct: 192 DSLEVYHECFGGCVGTLEIELYTDPYAECVTCSQCDGV 229
>SB_40040| Best HMM Match : hATC (HMM E-Value=3.7e-08)
Length = 824
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 128 VCSGTP*LILPLLAYGRTFPSRWPF 54
+ SG +PL +YGRT RWP+
Sbjct: 469 ILSGDKGGAVPLFSYGRTTLQRWPY 493
>SB_41614| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 938
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +3
Query: 84 IRKKRKYELGRPAANTRLGPQRIHSXSFTWW 176
+ KR L RP + L Q++ S F WW
Sbjct: 881 VAAKRLQHLNRPNNDAILDLQKLQSARFVWW 911
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,105,645
Number of Sequences: 59808
Number of extensions: 387742
Number of successful extensions: 981
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -