Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_O15
         (610 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40799-7|AAA81485.1|  208|Caenorhabditis elegans Ribosomal prote...   188   2e-48
U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug resis...    33   0.16 
U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug resis...    33   0.16 
U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug resis...    33   0.16 
U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug resis...    33   0.16 
U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug resis...    33   0.16 
AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug res...    33   0.16 
L14745-8|AAA27923.1|  244|Caenorhabditis elegans Tetraspanin fam...    28   6.0  
AL117205-7|CAB55160.1|  293|Caenorhabditis elegans Hypothetical ...    28   6.0  

>U40799-7|AAA81485.1|  208|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 8 protein.
          Length = 208

 Score =  188 bits (459), Expect = 2e-48
 Identities = 88/136 (64%), Positives = 103/136 (75%)
 Frame = +1

Query: 163 RSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDA 342
           R+RGGN KYRALRLD+GNFSW SE +TRKTRI+D +YNA+NNELVRTKTLVK AI+ VDA
Sbjct: 47  RTRGGNEKYRALRLDSGNFSWASEQTTRKTRIVDTMYNATNNELVRTKTLVKGAIISVDA 106

Query: 343 TPFRQWYESHYTLPLGRKKGAKLTEAEEAIINXKRSQKTARKYLARQRLAKVEGALXEQF 522
            PFRQWYE+HY LPL RKK AKL+E + AI+N KRS  T +KY  RQ+ A V+  L EQF
Sbjct: 107 APFRQWYEAHYALPLARKKNAKLSEEDNAILNKKRSHHTMKKYTERQKTAAVDALLIEQF 166

Query: 523 HTGXFAGLRGESPRSV 570
           +TG        SP  V
Sbjct: 167 NTGRLLARISSSPGQV 182



 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 19/27 (70%), Positives = 23/27 (85%)
 Frame = +2

Query: 530 GRLLACVASRPGQCGRADGYILXGKEL 610
           GRLLA ++S PGQ G+A+GYIL GKEL
Sbjct: 169 GRLLARISSSPGQVGQANGYILEGKEL 195



 Score = 39.5 bits (88), Expect = 0.002
 Identities = 17/29 (58%), Positives = 22/29 (75%), Gaps = 1/29 (3%)
 Frame = +3

Query: 69  GKRAPI-RKKRKYELGRPAANTRLGPQRI 152
           G   P+  KKRK+ELGRPAANT++G  R+
Sbjct: 15  GATQPVPHKKRKFELGRPAANTKIGAHRV 43



 Score = 30.7 bits (66), Expect = 0.85
 Identities = 12/15 (80%), Positives = 12/15 (80%)
 Frame = +2

Query: 23 MGISRDHWHKRRATG 67
          MGISRD WHKR  TG
Sbjct: 1  MGISRDSWHKRYKTG 15


>U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug
           resistance related protein1 protein.
          Length = 1540

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = +1

Query: 139 ALSESTPXRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 297
           A  E +P  S        A+++D G+F+WGS+   RK  + D+ +N    +LV
Sbjct: 595 AAEEMSPQTSIAYGGTDSAIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645


>U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug
           resistance protein familyprotein 1, isoform e protein.
          Length = 1534

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = +1

Query: 139 ALSESTPXRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 297
           A  E +P  S        A+++D G+F+WGS+   RK  + D+ +N    +LV
Sbjct: 595 AAEEMSPQTSIAYGGTDSAIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645


>U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug
           resistance protein familyprotein 1, isoform c protein.
          Length = 1534

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = +1

Query: 139 ALSESTPXRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 297
           A  E +P  S        A+++D G+F+WGS+   RK  + D+ +N    +LV
Sbjct: 595 AAEEMSPQTSIAYGGTDSAIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645


>U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug
           resistance protein familyprotein 1, isoform b protein.
          Length = 1534

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = +1

Query: 139 ALSESTPXRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 297
           A  E +P  S        A+++D G+F+WGS+   RK  + D+ +N    +LV
Sbjct: 595 AAEEMSPQTSIAYGGTDSAIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645


>U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug
           resistance protein familyprotein 1, isoform a protein.
          Length = 1528

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = +1

Query: 139 ALSESTPXRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 297
           A  E +P  S        A+++D G+F+WGS+   RK  + D+ +N    +LV
Sbjct: 595 AAEEMSPQTSIAYGGTDSAIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645


>AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug
           resistance-associatedprotein protein.
          Length = 1534

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = +1

Query: 139 ALSESTPXRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 297
           A  E +P  S        A+++D G+F+WGS+   RK  + D+ +N    +LV
Sbjct: 595 AAEEMSPQTSIAYGGTDSAIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645


>L14745-8|AAA27923.1|  244|Caenorhabditis elegans Tetraspanin family
           protein 1 protein.
          Length = 244

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = -3

Query: 296 TNSLLDALYTTSMIRVLRV 240
           TNSL+DA+YTT+ +  L++
Sbjct: 133 TNSLIDAMYTTNSVNDLKI 151


>AL117205-7|CAB55160.1|  293|Caenorhabditis elegans Hypothetical
           protein Y116A8A.8 protein.
          Length = 293

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +1

Query: 235 CSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQ 357
           CS +    I   ++A+NN ++  KT   N I     TPF Q
Sbjct: 51  CSIQNLMYIQKRFSANNNMIIALKTDTINEITESVCTPFEQ 91


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,623,831
Number of Sequences: 27780
Number of extensions: 270346
Number of successful extensions: 762
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)