Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_O15
         (610 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g20290.1 68418.m02415 40S ribosomal protein S8 (RPS8A) riboso...   149   2e-36
At5g59240.1 68418.m07424 40S ribosomal protein S8 (RPS8B) 40S ri...   143   9e-35
At5g41820.1 68418.m05092 geranylgeranyl transferase alpha subuni...    29   2.4  
At4g31180.2 68417.m04427 aspartyl-tRNA synthetase, putative / as...    29   2.4  
At4g31180.1 68417.m04426 aspartyl-tRNA synthetase, putative / as...    29   2.4  
At1g73260.1 68414.m08478 trypsin and protease inhibitor family p...    29   2.4  
At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 ...    29   3.2  
At3g61850.2 68416.m06946 Dof zinc finger protein DAG1 / Dof affe...    27   9.7  
At3g61850.1 68416.m06945 Dof zinc finger protein DAG1 / Dof affe...    27   9.7  

>At5g20290.1 68418.m02415 40S ribosomal protein S8 (RPS8A) ribosomal
           protein S8 - Zea mays, PIR:T04088
          Length = 222

 Score =  149 bits (360), Expect = 2e-36
 Identities = 81/148 (54%), Positives = 98/148 (66%), Gaps = 10/148 (6%)
 Frame = +1

Query: 118 PLQTPGSALSESTPXRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 297
           P  T  S+       R RGGN K+RALRLDTGN+SWGSE +TRKTR++DVVYNASNNELV
Sbjct: 33  PANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEATTRKTRVLDVVYNASNNELV 92

Query: 298 RTKTLVKNAIVVVDATPFRQWYESHYTLPLGR-KKGAKLT-----EAEEAII----NXKR 447
           RTKTLVK+AIV VDA PF+QWY SHY + LGR KK A  T     E EEA +      K+
Sbjct: 93  RTKTLVKSAIVQVDAAPFKQWYLSHYGVELGRKKKSASSTKKDGEEGEEAAVAAPEEVKK 152

Query: 448 SQKTARKYLARQRLAKVEGALXEQFHTG 531
           S    RK  +RQ    ++  + +QF +G
Sbjct: 153 SNHLLRKIASRQEGRSLDSHIEDQFASG 180



 Score = 57.6 bits (133), Expect = 6e-09
 Identities = 24/27 (88%), Positives = 26/27 (96%)
 Frame = +2

Query: 530 GRLLACVASRPGQCGRADGYILXGKEL 610
           GRLLAC++SRPGQCGRADGYIL GKEL
Sbjct: 180 GRLLACISSRPGQCGRADGYILEGKEL 206



 Score = 35.1 bits (77), Expect = 0.037
 Identities = 15/27 (55%), Positives = 19/27 (70%)
 Frame = +3

Query: 69  GKRAPIRKKRKYELGRPAANTRLGPQR 149
           GK+   RKKRKYE+GR  ANT+L   +
Sbjct: 16  GKQKQWRKKRKYEMGRQPANTKLSSNK 42



 Score = 29.9 bits (64), Expect = 1.4
 Identities = 13/15 (86%), Positives = 13/15 (86%)
 Frame = +2

Query: 23 MGISRDHWHKRRATG 67
          MGISRD  HKRRATG
Sbjct: 1  MGISRDSIHKRRATG 15


>At5g59240.1 68418.m07424 40S ribosomal protein S8 (RPS8B) 40S
           ribosomal protein S8, Prunus armeniaca, EMBL:AF071889
          Length = 210

 Score =  143 bits (346), Expect = 9e-35
 Identities = 76/138 (55%), Positives = 89/138 (64%)
 Frame = +1

Query: 118 PLQTPGSALSESTPXRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 297
           P  T  S+       R RGGN K+RALRLDTGNFSWGSE  TRKTRI+DV YNASNNELV
Sbjct: 33  PANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNFSWGSEAVTRKTRILDVAYNASNNELV 92

Query: 298 RTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINXKRSQKTARKYLA 477
           RT+TLVK+AIV VDA PF+Q Y  HY + +GRKK  +    EE     K+S    RK   
Sbjct: 93  RTQTLVKSAIVQVDAAPFKQGYLQHYGVDIGRKKKGEAVTTEEV----KKSNHVQRKLEM 148

Query: 478 RQRLAKVEGALXEQFHTG 531
           RQ    ++  L EQF +G
Sbjct: 149 RQEGRALDSHLEEQFSSG 166



 Score = 59.3 bits (137), Expect = 2e-09
 Identities = 25/29 (86%), Positives = 27/29 (93%)
 Frame = +2

Query: 524 TQGRLLACVASRPGQCGRADGYILXGKEL 610
           + GRLLAC+ASRPGQCGRADGYIL GKEL
Sbjct: 164 SSGRLLACIASRPGQCGRADGYILEGKEL 192



 Score = 35.5 bits (78), Expect = 0.028
 Identities = 16/27 (59%), Positives = 19/27 (70%)
 Frame = +3

Query: 69  GKRAPIRKKRKYELGRPAANTRLGPQR 149
           GK+   RKKRKYELGR  ANT+L   +
Sbjct: 16  GKQKMWRKKRKYELGRQPANTKLSSNK 42



 Score = 29.9 bits (64), Expect = 1.4
 Identities = 13/15 (86%), Positives = 13/15 (86%)
 Frame = +2

Query: 23 MGISRDHWHKRRATG 67
          MGISRD  HKRRATG
Sbjct: 1  MGISRDSIHKRRATG 15


>At5g41820.1 68418.m05092 geranylgeranyl transferase alpha
           subunit-related / RAB geranylgeranyltransferase alpha
           subunit-related low similarity to SP|Q08602 [Rattus
           norvegicus]
          Length = 687

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = -3

Query: 302 VRTNSLLDALYTTSMIRVLRVEHSDPQEKLPVSRRSARYLVFPPRERXG 156
           +R+ S LD+L     +RVL V H+    +LPV   + RYL   P    G
Sbjct: 580 IRSFSALDSLRHLKQLRVLDVSHNHICGELPVD--TTRYLCSSPLSNSG 626


>At4g31180.2 68417.m04427 aspartyl-tRNA synthetase, putative /
           aspartate--tRNA ligase, putative similar to
           Aspartyl-tRNA synthetase (Aspartate--tRNA ligase)
           (AspRS) [Homo sapiens] GI:20178330
          Length = 558

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
 Frame = +2

Query: 92  EEEV*VRASRCKHQARPSANPLRFVHVVEILSTVRCV--WTPVTSLGDRNVQLAKPVS 259
           E EV +R     H  RP++N L FV + E  STV+CV   +  T +G   V+  K +S
Sbjct: 107 ESEVLIRGR--VHTNRPTSNKLGFVVLRESGSTVQCVVSQSEKTKVGANMVKYLKQLS 162


>At4g31180.1 68417.m04426 aspartyl-tRNA synthetase, putative /
           aspartate--tRNA ligase, putative similar to
           Aspartyl-tRNA synthetase (Aspartate--tRNA ligase)
           (AspRS) [Homo sapiens] GI:20178330
          Length = 558

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
 Frame = +2

Query: 92  EEEV*VRASRCKHQARPSANPLRFVHVVEILSTVRCV--WTPVTSLGDRNVQLAKPVS 259
           E EV +R     H  RP++N L FV + E  STV+CV   +  T +G   V+  K +S
Sbjct: 107 ESEVLIRGR--VHTNRPTSNKLGFVVLRESGSTVQCVVSQSEKTKVGANMVKYLKQLS 162


>At1g73260.1 68414.m08478 trypsin and protease inhibitor family
           protein / Kunitz family protein similar to trypsin
           inhibitor propeptide [Brassica oleracea] GI:841208;
           contains Pfam profile PF00197: Trypsin and protease
           inhibitor
          Length = 215

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +1

Query: 292 LVRTKTLVKNAI-VVVDATPFRQWYESHYTLPLGRKKGAKLTEA 420
           L  T  L  NA   VVD      ++ES+Y LP+ R +G  LT A
Sbjct: 16  LALTAVLASNAYGAVVDIDGNAMFHESYYVLPVIRGRGGGLTLA 59


>At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 WD
           repeats (PF00400); similar to Fzr1 (GI:6463679) {Homo
           sapiens}; similar to WD repeat protein Srw1
           -Schizosaccharomyces pombe,PID:d1023012
          Length = 475

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +1

Query: 172 GGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVV 333
           GG T  R +R      +    C    +++ ++V++ + NELV T    +N I+V
Sbjct: 353 GGGTADRCIRFWNTTTNTHLNCVDTNSQVCNLVWSKNVNELVSTHGYSQNQIIV 406


>At3g61850.2 68416.m06946 Dof zinc finger protein DAG1 / Dof
           affecting germination 1 (DAG1) / transcription factor
           BBFa (BBFA) identical to SP|Q43385 DOF zinc finger
           protein DAG1 (Dof affecting germination 1)
           (Transcription factor BBFa) (AtBBFa) (rolB domain B
           factor a) {Arabidopsis thaliana}
          Length = 284

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 142 LSESTPXRSRGGNTKYRALRLDTGNFSW 225
           LS +T  +S G NT +  +  +TG  SW
Sbjct: 257 LSSTTQEKSHGNNTYWNGMFSNTGGSSW 284


>At3g61850.1 68416.m06945 Dof zinc finger protein DAG1 / Dof
           affecting germination 1 (DAG1) / transcription factor
           BBFa (BBFA) identical to SP|Q43385 DOF zinc finger
           protein DAG1 (Dof affecting germination 1)
           (Transcription factor BBFa) (AtBBFa) (rolB domain B
           factor a) {Arabidopsis thaliana}
          Length = 296

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 142 LSESTPXRSRGGNTKYRALRLDTGNFSW 225
           LS +T  +S G NT +  +  +TG  SW
Sbjct: 269 LSSTTQEKSHGNNTYWNGMFSNTGGSSW 296


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,980,017
Number of Sequences: 28952
Number of extensions: 251170
Number of successful extensions: 691
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)