Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_O12
         (618 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.12c |||NADP-specific glutamate dehydrogenase |Schizosacc...    33   0.044
SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.9  
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   5.0  
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar...    26   5.0  
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    25   8.8  
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|...    25   8.8  
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz...    25   8.8  

>SPCC622.12c |||NADP-specific glutamate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 451

 Score = 32.7 bits (71), Expect = 0.044
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = +1

Query: 430 ILKLMEPCDHILEIQFPLRRDSGDYEMILXYRAQHSTHRTPTKGGIRFSTDVTRDEVKAL 609
           +L ++   + +LE +     D G+  +   YR Q ++   P KGG+RF   V    +K L
Sbjct: 35  VLPIISIPERVLEFRVTWEDDKGNCRVNTGYRVQFNSALGPYKGGLRFHPSVNLSILKFL 94


>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 575

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = +1

Query: 451 CDHILEIQFPLRR 489
           CDHI+ +Q+PL+R
Sbjct: 120 CDHIVNLQYPLKR 132


>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 867

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = +2

Query: 392 GHPLKXRKXK*PVF*NLWNHAITFLRFNFL*GAILAITK*YXAIAHNI-PHTGLQPKEV 565
           G PL  ++    +F ++WN  I  L   F   A L+       +A +I  H G +P+ V
Sbjct: 474 GSPLSGKESTKVIFSSMWNPTIVLLLGGFTIAAALSKYHIAKRLATSILAHAGRKPRSV 532


>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 682

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 10/29 (34%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -3

Query: 553 LESCVWNVVRDSXISFRNRQN-RASEEIE 470
           +  C+WN++R       NR+N RA+ E++
Sbjct: 612 MRRCMWNILRVEHEEIYNRENLRAARELK 640


>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
           Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -1

Query: 267 LMTSVCAAADIHSSWYDSEHCIEGFIL 187
           LM  V +A DIH+S +  +HC +  ++
Sbjct: 762 LMDDVFSALDIHTSNWIYKHCFQSSLM 788


>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
           Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 128

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = +3

Query: 294 YKCESEVLPHGRIFFPPSLSSCRRQAC 374
           Y CE ++        PP  ++CR++ C
Sbjct: 89  YNCEKQICRKCYARLPPRATNCRKKKC 115


>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
           Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 128

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = +3

Query: 294 YKCESEVLPHGRIFFPPSLSSCRRQAC 374
           Y CE ++        PP  ++CR++ C
Sbjct: 89  YNCEKQICRKCYARLPPRATNCRKKKC 115


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,482,222
Number of Sequences: 5004
Number of extensions: 49229
Number of successful extensions: 110
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)