Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_O10
         (567 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g04230.1 68416.m00447 40S ribosomal protein S16 (RPS16B) simi...   189   1e-48
At2g09990.1 68415.m01037 40S ribosomal protein S16 (RPS16A) Same...   189   1e-48
At5g18380.1 68418.m02162 40S ribosomal protein S16 (RPS16C)           189   1e-48
At3g49080.1 68416.m05362 ribosomal protein S9 family protein con...    45   4e-05
At1g50650.1 68414.m05694 stigma-specific Stig1 family protein lo...    29   2.9  
At1g43570.1 68414.m05001 hypothetical protein                          29   2.9  

>At3g04230.1 68416.m00447 40S ribosomal protein S16 (RPS16B) similar
           to 40S ribosomal protein S16 GB:AAD22696 [Arabidopsis
           thaliana]
          Length = 146

 Score =  189 bits (461), Expect = 1e-48
 Identities = 83/129 (64%), Positives = 109/129 (84%)
 Frame = +3

Query: 54  QAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVD 233
           ++VQ FGRKKTATAV YCKRG GM+++NG P++L +P +L++K+ EP+LLLGK +F+ VD
Sbjct: 8   ESVQCFGRKKTATAVTYCKRGSGMIKLNGSPIELYQPEILRFKIFEPVLLLGKHRFAGVD 67

Query: 234 IRVTVKGGGHVXQVYAIRQAISKALIAFYXKYVHEASKXEIKXILVQYDRSLLVADPRRC 413
           +R+   GGG+  +VYAIRQ+I+KAL+A+Y KYV E SK EIK IL++YDR+LLVADPRRC
Sbjct: 68  MRIRATGGGNTSRVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILMRYDRTLLVADPRRC 127

Query: 414 EPKKFGGPG 440
           E KKFGGPG
Sbjct: 128 ESKKFGGPG 136


>At2g09990.1 68415.m01037 40S ribosomal protein S16 (RPS16A) Same as
           GB:Q42340
          Length = 146

 Score =  189 bits (461), Expect = 1e-48
 Identities = 85/135 (62%), Positives = 111/135 (82%)
 Frame = +3

Query: 36  ARREPIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKE 215
           A +   ++VQ FGRKKTA AV +CKRG G++++NG P++L +P +L++K+ EPILLLGK 
Sbjct: 2   ATQPATESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPILLLGKH 61

Query: 216 KFSMVDIRVTVKGGGHVXQVYAIRQAISKALIAFYXKYVHEASKXEIKXILVQYDRSLLV 395
           +F+ V++R+ V GGGH  QVYAIRQ+I+KAL+A+Y KYV E SK EIK ILV+YDR+LLV
Sbjct: 62  RFAGVNMRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLV 121

Query: 396 ADPRRCEPKKFGGPG 440
           ADPRRCEPKKFGG G
Sbjct: 122 ADPRRCEPKKFGGRG 136


>At5g18380.1 68418.m02162 40S ribosomal protein S16 (RPS16C)
          Length = 146

 Score =  189 bits (460), Expect = 1e-48
 Identities = 84/135 (62%), Positives = 111/135 (82%)
 Frame = +3

Query: 36  ARREPIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKE 215
           A +   ++VQ FGRKKTA AV +CKRG G++++NG P++L +P +L++K+ EP+LLLGK 
Sbjct: 2   ATQPATESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKH 61

Query: 216 KFSMVDIRVTVKGGGHVXQVYAIRQAISKALIAFYXKYVHEASKXEIKXILVQYDRSLLV 395
           +F+ V++R+ V GGGH  QVYAIRQ+I+KAL+A+Y KYV E SK EIK ILV+YDR+LLV
Sbjct: 62  RFAGVNMRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLV 121

Query: 396 ADPRRCEPKKFGGPG 440
           ADPRRCEPKKFGG G
Sbjct: 122 ADPRRCEPKKFGGRG 136


>At3g49080.1 68416.m05362 ribosomal protein S9 family protein
           contains Pfam profile PF00380: ribosomal protein S9
          Length = 430

 Score = 44.8 bits (101), Expect = 4e-05
 Identities = 28/79 (35%), Positives = 42/79 (53%)
 Frame = +3

Query: 72  GRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVK 251
           GR+K + A  + + G G  +VN +  D+  P +L ++      L   +     DI+ TVK
Sbjct: 310 GRRKCSIARVWIQPGEGKFQVNEKEFDVYFP-MLDHRAALLRPLAETKTLGRWDIKCTVK 368

Query: 252 GGGHVXQVYAIRQAISKAL 308
           GGG   QV AI+  IS+AL
Sbjct: 369 GGGTTGQVGAIQLGISRAL 387


>At1g50650.1 68414.m05694 stigma-specific Stig1 family protein low
           similarity to stigma-specific protein STIG1 [Nicotiana
           tabacum] GI:496647; contains Pfam profile PF04885:
           Stigma-specific protein, Stig1
          Length = 174

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 11/39 (28%), Positives = 17/39 (43%)
 Frame = -1

Query: 132 HAAFHDHACNTQLRWRFSYVRILGRPGWAHVLPPAQQPF 16
           H   HD+  NT   W  S+++      W    PP  +P+
Sbjct: 22  HVLGHDNQLNTTSSWLKSHIKAATTTNWGRPKPPMCKPW 60


>At1g43570.1 68414.m05001 hypothetical protein
          Length = 348

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -3

Query: 412 QRRGSATSKLLSYCTRMXLISFFEASCTYXW*KAIR 305
           +R  S T + LSYC R+ LI     S T  W  A R
Sbjct: 19  KRISSWTGRFLSYCGRLQLIKSVLMSITNFWSSAFR 54


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,689,153
Number of Sequences: 28952
Number of extensions: 244957
Number of successful extensions: 644
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1092379416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)