Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_O09
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9 |Schizosacchar...    28   1.0  
SPAC2F3.11 |||exopolyphosphatase |Schizosaccharomyces pombe|chr ...    25   7.2  
SPBC17G9.12c |||conserved fungal protein|Schizosaccharomyces pom...    25   9.5  

>SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 524

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 520 STQTSSQGAGHNEDMHIYAMCSRETR 443
           S   S QG G   ++ ++A C RETR
Sbjct: 464 SLSLSLQGKGKQSEVRVFAACGRETR 489


>SPAC2F3.11 |||exopolyphosphatase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 384

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
 Frame = +1

Query: 205 SKN--LGQELILCRKC--GADVADSHYLFSKQSPGALTIDKQN 321
           SKN   G++LIL ++   GA +ADS    SKQ+ G   I++++
Sbjct: 309 SKNDEFGRQLILYKRTERGAGLADSFLKLSKQNLGLEIIEEKD 351


>SPBC17G9.12c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 274

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 144 IVNTIFHMLHINWS 185
           +  TIFH+L +NWS
Sbjct: 115 VSKTIFHVLSVNWS 128


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,618,088
Number of Sequences: 5004
Number of extensions: 54652
Number of successful extensions: 116
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)